HEADER ISOMERASE 30-MAR-16 5G1T TITLE S. ENTERICA HISA MUTANT DUP13-15, D10G COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO) COMPND 3 METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE COMPND 6 RIBOTIDE ISOMERASE; COMPND 7 EC: 5.3.1.16; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA; SOURCE 3 ORGANISM_TAXID: 28901; SOURCE 4 GENE: HISA, AIY46_13150, AL463_17045, CQW68_13095, D3346_17640, SOURCE 5 D3Q81_15095, EAW95_14430, FJR52_10950, GCH85_22590, NCTC6385_02080, SOURCE 6 ND68_15100; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEXP5-CT KEYWDS ISOMERASE, HISA, PROTEIN EVOLUTION, IAD MODEL, TRPF EXPDTA X-RAY DIFFRACTION AUTHOR X.GUO,A.SODERHOLM,M.NEWTON,J.NASVALL,D.ANDERSSON,W.PATRICK,M.SELMER REVDAT 5 16-OCT-24 5G1T 1 REMARK REVDAT 4 10-JAN-24 5G1T 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 SEQADV SHEET LINK REVDAT 3 10-MAY-17 5G1T 1 JRNL REVDAT 2 26-APR-17 5G1T 1 JRNL REVDAT 1 19-APR-17 5G1T 0 JRNL AUTH M.S.NEWTON,X.GUO,A.SODERHOLM,J.NASVALL,P.LUNDSTROM, JRNL AUTH 2 D.I.ANDERSSON,M.SELMER,W.M.PATRICK JRNL TITL STRUCTURAL AND FUNCTIONAL INNOVATIONS IN THE REAL-TIME JRNL TITL 2 EVOLUTION OF NEW ( BETA ALPHA )8 BARREL ENZYMES. JRNL REF PROC. NATL. ACAD. SCI. V. 114 4727 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28416687 JRNL DOI 10.1073/PNAS.1618552114 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5535 - 3.7780 1.00 2878 152 0.1540 0.1864 REMARK 3 2 3.7780 - 2.9997 1.00 2709 142 0.1685 0.1944 REMARK 3 3 2.9997 - 2.6209 1.00 2682 142 0.1888 0.1910 REMARK 3 4 2.6209 - 2.3814 1.00 2654 139 0.1734 0.2188 REMARK 3 5 2.3814 - 2.2107 1.00 2639 139 0.1713 0.1892 REMARK 3 6 2.2107 - 2.0804 1.00 2620 138 0.1727 0.2118 REMARK 3 7 2.0804 - 1.9763 1.00 2613 138 0.1745 0.2136 REMARK 3 8 1.9763 - 1.8903 1.00 2616 137 0.1784 0.2045 REMARK 3 9 1.8903 - 1.8175 1.00 2607 138 0.1833 0.2191 REMARK 3 10 1.8175 - 1.7548 1.00 2622 138 0.1942 0.2094 REMARK 3 11 1.7548 - 1.6999 1.00 2583 136 0.2161 0.2728 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1902 REMARK 3 ANGLE : 1.057 2621 REMARK 3 CHIRALITY : 0.045 316 REMARK 3 PLANARITY : 0.005 335 REMARK 3 DIHEDRAL : 12.765 724 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:14) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9528 43.2288 52.7781 REMARK 3 T TENSOR REMARK 3 T11: 0.1137 T22: 0.1317 REMARK 3 T33: 0.1946 T12: 0.0072 REMARK 3 T13: -0.0133 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 7.0060 L22: 6.5691 REMARK 3 L33: 7.1094 L12: -2.8762 REMARK 3 L13: -3.5741 L23: 2.7569 REMARK 3 S TENSOR REMARK 3 S11: -0.3551 S12: -0.1769 S13: -0.0848 REMARK 3 S21: 0.1065 S22: 0.1908 S23: -0.5966 REMARK 3 S31: 0.3656 S32: 0.5359 S33: 0.1669 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 15:33) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5757 35.9090 50.6337 REMARK 3 T TENSOR REMARK 3 T11: 0.5173 T22: 0.3600 REMARK 3 T33: 0.5589 T12: 0.0853 REMARK 3 T13: -0.0289 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 5.7005 L22: 5.8610 REMARK 3 L33: 2.9184 L12: -1.0510 REMARK 3 L13: 1.9924 L23: -3.9211 REMARK 3 S TENSOR REMARK 3 S11: -0.2779 S12: -0.6837 S13: -1.1895 REMARK 3 S21: 0.6877 S22: 0.1396 S23: -0.8565 REMARK 3 S31: 0.4310 S32: 0.1578 S33: 0.1597 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 34:58) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5948 46.5047 50.5736 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.1046 REMARK 3 T33: 0.1735 T12: 0.0026 REMARK 3 T13: -0.0052 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 5.0618 L22: 3.5982 REMARK 3 L33: 2.7331 L12: 0.7419 REMARK 3 L13: 0.5354 L23: 0.6320 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: 0.1161 S13: -0.2060 REMARK 3 S21: -0.0263 S22: 0.0099 S23: -0.5495 REMARK 3 S31: 0.1759 S32: 0.2991 S33: 0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 59:76) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1261 51.1352 44.3881 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.1599 REMARK 3 T33: 0.1931 T12: -0.0029 REMARK 3 T13: 0.0714 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 7.6771 L22: 4.2063 REMARK 3 L33: 3.7346 L12: -2.3584 REMARK 3 L13: -1.1946 L23: 0.2633 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.1898 S13: 0.1398 REMARK 3 S21: -0.6187 S22: 0.1008 S23: -0.6353 REMARK 3 S31: 0.1095 S32: 0.4269 S33: -0.0594 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 77:85) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9014 54.7661 55.3831 REMARK 3 T TENSOR REMARK 3 T11: 0.1390 T22: 0.3885 REMARK 3 T33: 0.2115 T12: 0.0275 REMARK 3 T13: -0.0775 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 7.9651 L22: 7.5564 REMARK 3 L33: 2.1517 L12: 6.3413 REMARK 3 L13: -0.7481 L23: 1.6337 REMARK 3 S TENSOR REMARK 3 S11: -0.3802 S12: 0.0869 S13: -0.1980 REMARK 3 S21: 0.1223 S22: 0.2148 S23: -0.6106 REMARK 3 S31: 0.1786 S32: 0.8133 S33: 0.0045 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 86:99) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6394 58.4464 49.8629 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.2255 REMARK 3 T33: 0.1433 T12: -0.0356 REMARK 3 T13: -0.0362 T23: 0.0751 REMARK 3 L TENSOR REMARK 3 L11: 8.0326 L22: 7.9795 REMARK 3 L33: 5.5261 L12: -0.4065 REMARK 3 L13: 3.7644 L23: 4.1810 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.1909 S13: -0.1895 REMARK 3 S21: -0.0128 S22: -0.3155 S23: -0.4244 REMARK 3 S31: -0.3344 S32: 0.8343 S33: 0.1795 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 100:107) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9296 55.5574 63.0719 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.1276 REMARK 3 T33: 0.1395 T12: 0.0225 REMARK 3 T13: -0.0154 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 8.9016 L22: 6.6756 REMARK 3 L33: 6.4897 L12: 4.6071 REMARK 3 L13: 6.0659 L23: 3.0026 REMARK 3 S TENSOR REMARK 3 S11: -0.1458 S12: 0.1182 S13: 0.2868 REMARK 3 S21: 0.1628 S22: 0.0863 S23: 0.0758 REMARK 3 S31: 0.1244 S32: 0.0367 S33: 0.0660 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 108:117) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5632 64.9223 62.6327 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.1340 REMARK 3 T33: 0.3193 T12: -0.0184 REMARK 3 T13: -0.0718 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 4.9126 L22: 4.0093 REMARK 3 L33: 4.6226 L12: -3.1290 REMARK 3 L13: 0.3796 L23: -3.2693 REMARK 3 S TENSOR REMARK 3 S11: -0.3997 S12: -0.0317 S13: 1.3273 REMARK 3 S21: 0.2115 S22: 0.1567 S23: -0.4081 REMARK 3 S31: -0.5883 S32: 0.1561 S33: 0.1465 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 118:121) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7802 66.4961 54.8654 REMARK 3 T TENSOR REMARK 3 T11: 0.2714 T22: 0.2241 REMARK 3 T33: 0.2711 T12: -0.0828 REMARK 3 T13: -0.0355 T23: 0.0889 REMARK 3 L TENSOR REMARK 3 L11: 7.0520 L22: 6.8553 REMARK 3 L33: 4.7928 L12: 0.1243 REMARK 3 L13: 5.4741 L23: 2.0200 REMARK 3 S TENSOR REMARK 3 S11: -0.0598 S12: 0.6231 S13: 0.1377 REMARK 3 S21: -0.0130 S22: -0.1146 S23: -0.4236 REMARK 3 S31: -1.2349 S32: 0.4446 S33: 0.0442 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 122:131) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6206 54.3926 65.1966 REMARK 3 T TENSOR REMARK 3 T11: 0.1829 T22: 0.1907 REMARK 3 T33: 0.1814 T12: -0.0167 REMARK 3 T13: -0.0386 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.3665 L22: 6.7216 REMARK 3 L33: 7.7755 L12: -1.6303 REMARK 3 L13: 1.9684 L23: -6.4420 REMARK 3 S TENSOR REMARK 3 S11: -0.1507 S12: -0.0238 S13: 0.0157 REMARK 3 S21: 0.2762 S22: 0.2465 S23: 0.0503 REMARK 3 S31: -0.2025 S32: -0.3132 S33: 0.0062 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 132:143) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2434 48.5589 78.4443 REMARK 3 T TENSOR REMARK 3 T11: 0.3715 T22: 0.3298 REMARK 3 T33: 0.1814 T12: 0.1369 REMARK 3 T13: 0.0099 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 5.3227 L22: 2.8410 REMARK 3 L33: 5.3500 L12: 2.8091 REMARK 3 L13: -2.0860 L23: -2.9058 REMARK 3 S TENSOR REMARK 3 S11: -0.3705 S12: -0.6840 S13: -0.2022 REMARK 3 S21: 0.7432 S22: 0.4496 S23: -0.0436 REMARK 3 S31: 0.8395 S32: 0.2786 S33: 0.0241 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 144:159) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9153 53.4662 73.4508 REMARK 3 T TENSOR REMARK 3 T11: 0.1484 T22: 0.1769 REMARK 3 T33: 0.2128 T12: -0.0153 REMARK 3 T13: -0.0076 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 6.9610 L22: 4.3008 REMARK 3 L33: 2.6672 L12: -5.3570 REMARK 3 L13: 2.1404 L23: -2.2442 REMARK 3 S TENSOR REMARK 3 S11: -0.3754 S12: -0.2293 S13: 0.2367 REMARK 3 S21: 0.2850 S22: 0.4152 S23: -0.5002 REMARK 3 S31: -0.0429 S32: -0.0312 S33: -0.0696 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 160:177) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4500 57.2785 67.2139 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.1303 REMARK 3 T33: 0.1066 T12: -0.0105 REMARK 3 T13: -0.0226 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 5.9064 L22: 7.7011 REMARK 3 L33: 5.3161 L12: 0.6091 REMARK 3 L13: 0.2556 L23: -1.9795 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: -0.1303 S13: 0.1554 REMARK 3 S21: 0.0223 S22: 0.1732 S23: 0.3156 REMARK 3 S31: 0.1398 S32: -0.2805 S33: -0.2102 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 186:190) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9590 52.5600 74.7870 REMARK 3 T TENSOR REMARK 3 T11: 0.2902 T22: 0.3525 REMARK 3 T33: 0.2249 T12: 0.0123 REMARK 3 T13: -0.0107 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 7.3763 L22: 5.5347 REMARK 3 L33: 5.6051 L12: 0.2499 REMARK 3 L13: 1.1427 L23: 5.5257 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.4966 S13: -0.5253 REMARK 3 S21: 0.5397 S22: 0.1548 S23: -0.0240 REMARK 3 S31: 0.7816 S32: -0.6996 S33: -0.2752 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 191:196) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8709 61.6656 74.1328 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.2182 REMARK 3 T33: 0.1543 T12: 0.0446 REMARK 3 T13: -0.0091 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 9.1047 L22: 5.8303 REMARK 3 L33: 8.0185 L12: 0.6756 REMARK 3 L13: -2.7473 L23: -5.1029 REMARK 3 S TENSOR REMARK 3 S11: -0.1889 S12: -0.7240 S13: 0.1877 REMARK 3 S21: 0.0528 S22: 0.0158 S23: -0.3350 REMARK 3 S31: -0.1159 S32: 0.2437 S33: 0.1710 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 197:207) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0929 48.6944 65.5536 REMARK 3 T TENSOR REMARK 3 T11: 0.2293 T22: 0.1854 REMARK 3 T33: 0.1097 T12: -0.0211 REMARK 3 T13: -0.0273 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 4.6962 L22: 9.3347 REMARK 3 L33: 3.3395 L12: 3.0441 REMARK 3 L13: 2.2930 L23: 4.3750 REMARK 3 S TENSOR REMARK 3 S11: 0.2308 S12: -0.2720 S13: -0.1929 REMARK 3 S21: 0.6218 S22: -0.0875 S23: -0.2225 REMARK 3 S31: 0.4148 S32: -0.1450 S33: -0.1403 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 208:218) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1057 46.2555 68.0995 REMARK 3 T TENSOR REMARK 3 T11: 0.2934 T22: 0.3979 REMARK 3 T33: 0.2465 T12: -0.1032 REMARK 3 T13: 0.0729 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 5.4452 L22: 7.9724 REMARK 3 L33: 6.8139 L12: 4.9345 REMARK 3 L13: 3.5594 L23: 7.1806 REMARK 3 S TENSOR REMARK 3 S11: 0.6060 S12: -1.1222 S13: 0.2645 REMARK 3 S21: 1.1125 S22: -1.0374 S23: 0.7295 REMARK 3 S31: 0.6426 S32: -0.6485 S33: 0.5473 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 219:224) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4441 51.0981 63.1298 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.1861 REMARK 3 T33: 0.2140 T12: -0.0016 REMARK 3 T13: -0.0202 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 8.2870 L22: 4.9857 REMARK 3 L33: 5.0597 L12: 0.8935 REMARK 3 L13: 0.0806 L23: 4.9715 REMARK 3 S TENSOR REMARK 3 S11: 0.1364 S12: -0.2548 S13: 0.5643 REMARK 3 S21: -0.2502 S22: -0.2423 S23: -0.0319 REMARK 3 S31: -0.2999 S32: -0.5337 S33: 0.2177 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 225:236) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8549 37.9340 56.5299 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.1313 REMARK 3 T33: 0.1570 T12: -0.0485 REMARK 3 T13: -0.0428 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 7.2274 L22: 2.9407 REMARK 3 L33: 6.5446 L12: 0.3116 REMARK 3 L13: -4.4563 L23: 3.1240 REMARK 3 S TENSOR REMARK 3 S11: -0.1753 S12: -0.4659 S13: -0.1538 REMARK 3 S21: 0.3652 S22: -0.0105 S23: -0.4169 REMARK 3 S31: 0.4610 S32: 0.2612 S33: 0.1293 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 237:247) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0703 46.4442 60.4049 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.2520 REMARK 3 T33: 0.2732 T12: -0.0486 REMARK 3 T13: 0.0342 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 2.4865 L22: 2.3506 REMARK 3 L33: 9.8343 L12: -0.2022 REMARK 3 L13: 1.1399 L23: 2.9626 REMARK 3 S TENSOR REMARK 3 S11: 0.1146 S12: -0.6934 S13: 0.3129 REMARK 3 S21: 0.7193 S22: -0.0717 S23: 0.4346 REMARK 3 S31: -0.1718 S32: -0.5506 S33: -0.0280 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 15C-23, 175-182, 244-256 ARE REMARK 3 DISORDERED REMARK 4 REMARK 4 5G1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30762 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4GJ1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH 7.5, 0.8M NAH2PO4 AND REMARK 280 0.8M KH2PO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.62000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.24000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.93000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 101.55000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.31000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.62000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 81.24000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 101.55000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.93000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.31000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2014 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2052 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 15C REMARK 465 LEU A 15D REMARK 465 HIS A 15E REMARK 465 GLN A 15F REMARK 465 GLY A 15G REMARK 465 ASP A 15H REMARK 465 TYR A 15I REMARK 465 ALA A 15J REMARK 465 ARG A 15K REMARK 465 ARG A 175 REMARK 465 ASP A 176 REMARK 465 GLY A 177 REMARK 465 THR A 178 REMARK 465 LEU A 179 REMARK 465 ALA A 180 REMARK 465 GLY A 181 REMARK 465 SER A 182 REMARK 465 VAL A 245 REMARK 465 LYS A 246 REMARK 465 GLY A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 149 O HOH A 2096 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 57.43 -117.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2012 DISTANCE = 6.09 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 1248 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G1Y RELATED DB: PDB REMARK 900 S. ENTERICA HISA MUTANT D10G, V14:2M, Q24L, G102A DBREF1 5G1T A 1 245 UNP A0A630AQ07_SALER DBREF2 5G1T A A0A630AQ07 1 245 SEQADV 5G1T GLY A 10 UNP A0A630AQ0 ASP 10 ENGINEERED MUTATION SEQADV 5G1T VAL A 15A UNP A0A630AQ0 INSERTION SEQADV 5G1T VAL A 15B UNP A0A630AQ0 INSERTION SEQADV 5G1T ARG A 15C UNP A0A630AQ0 INSERTION SEQADV 5G1T LYS A 246 UNP A0A630AQ0 EXPRESSION TAG SEQADV 5G1T GLY A 247 UNP A0A630AQ0 EXPRESSION TAG SEQADV 5G1T HIS A 248 UNP A0A630AQ0 EXPRESSION TAG SEQADV 5G1T HIS A 249 UNP A0A630AQ0 EXPRESSION TAG SEQADV 5G1T HIS A 250 UNP A0A630AQ0 EXPRESSION TAG SEQADV 5G1T HIS A 251 UNP A0A630AQ0 EXPRESSION TAG SEQADV 5G1T HIS A 252 UNP A0A630AQ0 EXPRESSION TAG SEQADV 5G1T HIS A 253 UNP A0A630AQ0 EXPRESSION TAG SEQRES 1 A 256 MET ILE ILE PRO ALA LEU ASP LEU ILE GLY GLY THR VAL SEQRES 2 A 256 VAL ARG VAL VAL ARG LEU HIS GLN GLY ASP TYR ALA ARG SEQRES 3 A 256 GLN ARG ASP TYR GLY ASN ASP PRO LEU PRO ARG LEU GLN SEQRES 4 A 256 ASP TYR ALA ALA GLN GLY ALA GLY VAL LEU HIS LEU VAL SEQRES 5 A 256 ASP LEU THR GLY ALA LYS ASP PRO ALA LYS ARG GLN ILE SEQRES 6 A 256 PRO LEU ILE LYS THR LEU VAL ALA GLY VAL ASN VAL PRO SEQRES 7 A 256 VAL GLN VAL GLY GLY GLY VAL ARG THR GLU GLU ASP VAL SEQRES 8 A 256 ALA ALA LEU LEU LYS ALA GLY VAL ALA ARG VAL VAL ILE SEQRES 9 A 256 GLY SER THR ALA VAL LYS SER PRO ASP VAL VAL LYS GLY SEQRES 10 A 256 TRP PHE GLU ARG PHE GLY ALA GLN ALA LEU VAL LEU ALA SEQRES 11 A 256 LEU ASP VAL ARG ILE ASP GLU HIS GLY THR LYS GLN VAL SEQRES 12 A 256 ALA VAL SER GLY TRP GLN GLU ASN SER GLY VAL SER LEU SEQRES 13 A 256 GLU GLN LEU VAL GLU THR TYR LEU PRO VAL GLY LEU LYS SEQRES 14 A 256 HIS VAL LEU CYS THR ASP ILE SER ARG ASP GLY THR LEU SEQRES 15 A 256 ALA GLY SER ASN VAL SER LEU TYR GLU GLU VAL CYS ALA SEQRES 16 A 256 ARG TYR PRO GLN ILE ALA PHE GLN SER SER GLY GLY ILE SEQRES 17 A 256 GLY ASP ILE ASP ASP ILE ALA ALA LEU ARG GLY THR GLY SEQRES 18 A 256 VAL ARG GLY VAL ILE VAL GLY ARG ALA LEU LEU GLU GLY SEQRES 19 A 256 LYS PHE THR VAL LYS GLU ALA ILE GLN CME TRP GLN ASN SEQRES 20 A 256 VAL LYS GLY HIS HIS HIS HIS HIS HIS MODRES 5G1T CME A 241 CYS MODIFIED RESIDUE HET CME A 241 10 HET PO4 A1246 5 HET PO4 A1247 10 HET EPE A1248 15 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM PO4 PHOSPHATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 EPE C8 H18 N2 O4 S FORMUL 5 HOH *147(H2 O) HELIX 1 1 ASP A 30 GLN A 41 1 12 HELIX 2 2 LEU A 51 ASP A 56 1 6 HELIX 3 3 PRO A 57 ARG A 60 5 4 HELIX 4 4 GLN A 61 GLY A 71 1 11 HELIX 5 5 THR A 84 ALA A 94 1 11 HELIX 6 6 GLY A 102 SER A 108 1 7 HELIX 7 7 SER A 108 GLY A 120 1 13 HELIX 8 8 SER A 152 LEU A 161 1 10 HELIX 9 9 PRO A 162 GLY A 164 5 3 HELIX 10 10 ASN A 183 TYR A 194 1 12 HELIX 11 11 ASP A 207 ALA A 213 1 7 HELIX 12 12 GLY A 225 GLU A 230 1 6 HELIX 13 13 THR A 234 ASN A 244 1 11 SHEET 1 AA 7 ARG A 25 ASP A 26 0 SHEET 2 AA 7 THR A 12 ARG A 15 1 O ARG A 15 N ARG A 25 SHEET 3 AA 7 ILE A 2 ILE A 9 -1 O ASP A 7 N VAL A 14 SHEET 4 AA 7 GLY A 221 VAL A 224 1 O VAL A 222 N ILE A 3 SHEET 5 AA 7 ALA A 198 SER A 202 1 O SER A 201 N ILE A 223 SHEET 6 AA 7 HIS A 167 ASP A 172 1 O VAL A 168 N GLN A 200 SHEET 7 AA 7 LEU A 124 ILE A 132 1 O LEU A 126 N LEU A 169 SHEET 1 AB 2 ARG A 25 ASP A 26 0 SHEET 2 AB 2 LEU A 124 ILE A 132 1 O VAL A 125 N ILE A 101 LINK C GLN A 240 N CME A 241 1555 1555 1.33 LINK C CME A 241 N TRP A 242 1555 1555 1.33 SITE 1 AC1 7 GLY A 81 ARG A 83 GLY A 102 SER A 103 SITE 2 AC1 7 HOH A2053 HOH A2055 HOH A2148 SITE 1 AC2 8 GLY A 203 GLY A 204 ILE A 205 ILE A 223 SITE 2 AC2 8 VAL A 224 GLY A 225 ARG A 226 HOH A2128 SITE 1 AC3 9 MET A 1 ARG A 131 GLU A 147 ASN A 148 SITE 2 AC3 9 GLY A 150 ALA A 198 ARG A 220 GLN A 243 SITE 3 AC3 9 HOH A2095 CRYST1 87.220 87.220 121.860 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011465 0.006619 0.000000 0.00000 SCALE2 0.000000 0.013239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008206 0.00000