HEADER UNKNOWN FUNCTION 07-APR-16 5G2F TITLE TYPE IV-LIKE COMPETENCE PILIN TTHA1222 FROM THERMUS TITLE 2 THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE-IV LIKE PILIN TTHA1222; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: T7 EXPRESS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS UNKNOWN FUNCTION, NATURAL COMPETENCE, TYPE IV PILUS, DNA UPTAKE EXPDTA X-RAY DIFFRACTION AUTHOR V.KARUPPIAH,J.P.DERRICK REVDAT 3 07-DEC-16 5G2F 1 JRNL REVDAT 2 28-SEP-16 5G2F 1 JRNL REVDAT 1 14-SEP-16 5G2F 0 JRNL AUTH V.KARUPPIAH,A.THISTLETHWAITE,J.P.DERRICK JRNL TITL STRUCTURES OF TYPE IV PILINS FROM THERMUS THERMOPHILUS JRNL TITL 2 DEMONSTRATE SIMILARITIES WITH TYPE II SECRETION SYSTEM JRNL TITL 3 PSEUDOPILINS JRNL REF J.STRUCT.BIOL. V. 196 375 2016 JRNL REFN ISSN 1047-8477 JRNL PMID 27612581 JRNL DOI 10.1016/J.JSB.2016.08.006 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 97.62 REMARK 3 NUMBER OF REFLECTIONS : 26205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18421 REMARK 3 R VALUE (WORKING SET) : 0.18248 REMARK 3 FREE R VALUE : 0.20781 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1965 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.854 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.902 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1828 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.257 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.278 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.767 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01 REMARK 3 B22 (A**2) : -0.01 REMARK 3 B33 (A**2) : 0.03 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.124 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1841 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1775 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2513 ; 1.492 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4083 ; 1.053 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 5.716 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;40.109 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 290 ;11.188 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;11.661 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2067 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 376 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 980 ; 1.720 ; 2.709 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 979 ; 1.715 ; 2.707 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1218 ; 2.512 ; 4.043 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 861 ; 2.459 ; 2.994 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 38 123 B 38 123 8882 0.12 0.05 REMARK 3 2 A 41 120 C 41 120 7508 0.12 0.05 REMARK 3 3 B 41 120 C 41 120 7774 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4698 34.0207 14.6654 REMARK 3 T TENSOR REMARK 3 T11: 0.1337 T22: 0.0498 REMARK 3 T33: 0.1137 T12: -0.0024 REMARK 3 T13: -0.0690 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.6169 L22: 1.8345 REMARK 3 L33: 2.5129 L12: -0.2809 REMARK 3 L13: 0.4022 L23: 0.4110 REMARK 3 S TENSOR REMARK 3 S11: 0.0567 S12: -0.0945 S13: -0.2661 REMARK 3 S21: 0.3894 S22: -0.0006 S23: -0.2510 REMARK 3 S31: 0.4268 S32: -0.0087 S33: -0.0561 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6862 48.8994 21.7047 REMARK 3 T TENSOR REMARK 3 T11: 0.0806 T22: 0.0071 REMARK 3 T33: 0.0667 T12: 0.0090 REMARK 3 T13: -0.0623 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 3.7270 L22: 1.2196 REMARK 3 L33: 1.5184 L12: -0.8034 REMARK 3 L13: 0.5201 L23: -0.0527 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0457 S13: 0.2364 REMARK 3 S21: -0.1006 S22: -0.0099 S23: 0.0849 REMARK 3 S31: 0.0049 S32: -0.0795 S33: 0.0129 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 41 C 120 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4076 32.4586 8.5202 REMARK 3 T TENSOR REMARK 3 T11: 0.3975 T22: 0.3333 REMARK 3 T33: 0.1936 T12: -0.0547 REMARK 3 T13: -0.1078 T23: -0.1205 REMARK 3 L TENSOR REMARK 3 L11: 1.3712 L22: 1.0768 REMARK 3 L33: 3.8692 L12: 0.2865 REMARK 3 L13: 0.4916 L23: 0.9415 REMARK 3 S TENSOR REMARK 3 S11: -0.0460 S12: 0.6254 S13: -0.2275 REMARK 3 S21: -0.4815 S22: 0.0542 S23: 0.1599 REMARK 3 S31: 0.2408 S32: -0.1442 S33: -0.0081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 5G2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-16. REMARK 100 THE PDBE ID CODE IS EBI-66024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9512 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28582 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.85 REMARK 200 RESOLUTION RANGE LOW (A) : 31.86 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.1 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.9 REMARK 200 R MERGE (I) : 0.03 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.1 REMARK 200 R MERGE FOR SHELL (I) : 0.68 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA/K TARTRATE 0.1M SODIUM REMARK 280 CITRATE PH 5.6 2.0 M AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 42.19000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.59500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.29750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.19000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.89250 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.19000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.19000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.59500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 42.19000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 72.89250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 42.19000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.29750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 37 REMARK 465 LEU A 124 REMARK 465 GLU A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 MET B 37 REMARK 465 LEU B 124 REMARK 465 GLU B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 MET C 37 REMARK 465 ALA C 38 REMARK 465 ASN C 39 REMARK 465 LEU C 40 REMARK 465 ASP C 103 REMARK 465 GLY C 104 REMARK 465 ALA C 105 REMARK 465 ALA C 106 REMARK 465 LEU C 107 REMARK 465 LYS C 108 REMARK 465 SER C 121 REMARK 465 LEU C 122 REMARK 465 PRO C 123 REMARK 465 LEU C 124 REMARK 465 GLU C 125 REMARK 465 HIS C 126 REMARK 465 HIS C 127 REMARK 465 HIS C 128 REMARK 465 HIS C 129 REMARK 465 HIS C 130 REMARK 465 HIS C 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 2012 O HOH C 2012 6665 0.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 92 -168.25 -169.12 REMARK 500 ASN B 92 -167.57 -169.58 REMARK 500 ASN C 92 -171.75 -170.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1124 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G23 RELATED DB: PDB REMARK 900 TYPE IV-LIKE PILIN TTHA1219 FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 5G24 RELATED DB: PDB REMARK 900 TYPE IV-LIKE PILIN TTHA1219 FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 5G25 RELATED DB: PDB REMARK 900 TYPE IV-LIKE PILIN TTHA1218 FROM THERMUS THERMOPHILUS DBREF 5G2F A 38 123 UNP Q5SIZ2 Q5SIZ2_THET8 38 123 DBREF 5G2F B 38 123 UNP Q5SIZ2 Q5SIZ2_THET8 38 123 DBREF 5G2F C 38 123 UNP Q5SIZ2 Q5SIZ2_THET8 38 123 SEQADV 5G2F MET A 37 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F LEU A 124 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F GLU A 125 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS A 126 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS A 127 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS A 128 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS A 129 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS A 130 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS A 131 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F MET B 37 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F LEU B 124 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F GLU B 125 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS B 126 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS B 127 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS B 128 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS B 129 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS B 130 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS B 131 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F MET C 37 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F LEU C 124 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F GLU C 125 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS C 126 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS C 127 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS C 128 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS C 129 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS C 130 UNP Q5SIZ2 EXPRESSION TAG SEQADV 5G2F HIS C 131 UNP Q5SIZ2 EXPRESSION TAG SEQRES 1 A 95 MET ALA ASN LEU ALA ALA GLY GLN SER TYR VAL ARG ASN SEQRES 2 A 95 VAL ALA LEU ALA LEU GLU ALA GLN ARG ASP PRO SER THR SEQRES 3 A 95 GLY ALA LEU PRO THR HIS LEU THR ASP CYS LEU SER GLY SEQRES 4 A 95 PHE GLY GLN ARG PRO LYS THR VAL THR ALA CYS THR ILE SEQRES 5 A 95 THR TYR LEU ASN ALA LEU ASP TYR VAL ILE GLU ALA SER SEQRES 6 A 95 LEU ASP GLY ALA ALA LEU LYS LYS VAL VAL TYR LYS SER SEQRES 7 A 95 SER ASP GLY THR LEU THR SER LEU PRO LEU GLU HIS HIS SEQRES 8 A 95 HIS HIS HIS HIS SEQRES 1 B 95 MET ALA ASN LEU ALA ALA GLY GLN SER TYR VAL ARG ASN SEQRES 2 B 95 VAL ALA LEU ALA LEU GLU ALA GLN ARG ASP PRO SER THR SEQRES 3 B 95 GLY ALA LEU PRO THR HIS LEU THR ASP CYS LEU SER GLY SEQRES 4 B 95 PHE GLY GLN ARG PRO LYS THR VAL THR ALA CYS THR ILE SEQRES 5 B 95 THR TYR LEU ASN ALA LEU ASP TYR VAL ILE GLU ALA SER SEQRES 6 B 95 LEU ASP GLY ALA ALA LEU LYS LYS VAL VAL TYR LYS SER SEQRES 7 B 95 SER ASP GLY THR LEU THR SER LEU PRO LEU GLU HIS HIS SEQRES 8 B 95 HIS HIS HIS HIS SEQRES 1 C 95 MET ALA ASN LEU ALA ALA GLY GLN SER TYR VAL ARG ASN SEQRES 2 C 95 VAL ALA LEU ALA LEU GLU ALA GLN ARG ASP PRO SER THR SEQRES 3 C 95 GLY ALA LEU PRO THR HIS LEU THR ASP CYS LEU SER GLY SEQRES 4 C 95 PHE GLY GLN ARG PRO LYS THR VAL THR ALA CYS THR ILE SEQRES 5 C 95 THR TYR LEU ASN ALA LEU ASP TYR VAL ILE GLU ALA SER SEQRES 6 C 95 LEU ASP GLY ALA ALA LEU LYS LYS VAL VAL TYR LYS SER SEQRES 7 C 95 SER ASP GLY THR LEU THR SER LEU PRO LEU GLU HIS HIS SEQRES 8 C 95 HIS HIS HIS HIS HET SO4 B1124 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *119(H2 O) HELIX 1 1 ALA A 38 ALA A 56 1 19 HELIX 2 2 ALA B 38 GLN B 57 1 20 HELIX 3 3 ALA C 41 GLN C 57 1 17 SHEET 1 AA 4 VAL A 83 TYR A 90 0 SHEET 2 AA 4 TYR A 96 LEU A 102 -1 O VAL A 97 N THR A 89 SHEET 3 AA 4 LYS A 109 LYS A 113 -1 O VAL A 110 N ALA A 100 SHEET 4 AA 4 THR A 118 LEU A 119 -1 O THR A 118 N LYS A 113 SHEET 1 BA 4 VAL B 83 TYR B 90 0 SHEET 2 BA 4 TYR B 96 LEU B 102 -1 O VAL B 97 N THR B 89 SHEET 3 BA 4 LYS B 109 LYS B 113 -1 O VAL B 110 N ALA B 100 SHEET 4 BA 4 THR B 118 LEU B 122 -1 O THR B 118 N LYS B 113 SHEET 1 CA 4 ALA C 85 TYR C 90 0 SHEET 2 CA 4 TYR C 96 SER C 101 -1 O VAL C 97 N THR C 89 SHEET 3 CA 4 VAL C 110 LYS C 113 -1 O VAL C 110 N ALA C 100 SHEET 4 CA 4 THR C 118 LEU C 119 -1 O THR C 118 N LYS C 113 SSBOND 1 CYS A 72 CYS A 86 1555 1555 2.05 SSBOND 2 CYS B 72 CYS B 86 1555 1555 2.05 SSBOND 3 CYS C 72 CYS C 86 1555 1555 2.06 SITE 1 AC1 5 ALA B 38 ASN B 39 LEU B 40 ALA B 105 SITE 2 AC1 5 ALA B 106 CRYST1 84.380 84.380 97.190 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011851 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010289 0.00000 MTRIX1 1 -0.080100 0.996300 0.032100 -39.16370 1 MTRIX2 1 0.501300 0.068100 -0.862600 38.07730 1 MTRIX3 1 -0.861500 -0.053000 -0.504900 47.75770 1