HEADER HYDROLASE 09-APR-16 5G2M TITLE CRYSTAL STRUCTURE OF NAGZ FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH TITLE 2 N-ACETYLGLUCOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-HEXOSAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-N-ACETYLHEXOSAMINIDASE, N-ACETYL-BETA-GLUCOSAMINIDASE, COMPND 5 NAGZ; COMPND 6 EC: 3.2.1.52; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: BOTH PROTEIN CHAINS CONTAIN A HIS RESIDUE AT POSITION COMPND 9 -1 FROM THE FUSION TAG USED FOR PURIFICATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 ATCC: 15692; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE, CELL-WALL RECYCLING, ANTIBIOTIC RESISTANCE, GLYCOSIDE KEYWDS 2 HYDROLASE, BETA-HEXOSAMINIDASE, PEPTIDOGLYCAN EXPDTA X-RAY DIFFRACTION AUTHOR I.ACEBRON,C.ARTOLA-RECOLONS,K.MAHASENAN,S.MOBASHERY,J.A.HERMOSO REVDAT 5 01-MAY-24 5G2M 1 HETSYN REVDAT 4 29-JUL-20 5G2M 1 COMPND REMARK HETNAM SITE REVDAT 3 31-MAY-17 5G2M 1 JRNL REVDAT 2 24-MAY-17 5G2M 1 JRNL REVDAT 1 17-MAY-17 5G2M 0 JRNL AUTH I.ACEBRON,K.V.MAHASENAN,S.DE BENEDETTI,M.LEE, JRNL AUTH 2 C.ARTOLA-RECOLONS,D.HESEK,H.WANG,J.A.HERMOSO,S.MOBASHERY JRNL TITL CATALYTIC CYCLE OF THE N-ACETYLGLUCOSAMINIDASE NAGZ FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA. JRNL REF J. AM. CHEM. SOC. V. 139 6795 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28482153 JRNL DOI 10.1021/JACS.7B01626 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 13822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4463 - 5.1280 1.00 2691 133 0.1674 0.2106 REMARK 3 2 5.1280 - 4.0711 1.00 2634 127 0.1804 0.2283 REMARK 3 3 4.0711 - 3.5567 1.00 2625 139 0.2271 0.2745 REMARK 3 4 3.5567 - 3.2316 0.99 2614 133 0.2753 0.3902 REMARK 3 5 3.2316 - 3.0000 1.00 2586 140 0.3438 0.3852 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5173 REMARK 3 ANGLE : 0.565 7006 REMARK 3 CHIRALITY : 0.039 773 REMARK 3 PLANARITY : 0.004 936 REMARK 3 DIHEDRAL : 17.414 3126 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.2809 -10.7582 165.2091 REMARK 3 T TENSOR REMARK 3 T11: 0.5815 T22: 0.4534 REMARK 3 T33: 0.4649 T12: -0.0895 REMARK 3 T13: 0.0914 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 2.4208 L22: 2.1088 REMARK 3 L33: 4.5379 L12: 0.6591 REMARK 3 L13: 1.5418 L23: 0.1589 REMARK 3 S TENSOR REMARK 3 S11: 0.1913 S12: -0.0335 S13: -0.3727 REMARK 3 S21: 0.0767 S22: -0.1233 S23: -0.0048 REMARK 3 S31: 0.5598 S32: -0.4927 S33: -0.0478 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.7081 -5.2827 154.8374 REMARK 3 T TENSOR REMARK 3 T11: 0.8352 T22: 0.6665 REMARK 3 T33: 0.5964 T12: -0.1805 REMARK 3 T13: -0.1010 T23: -0.1227 REMARK 3 L TENSOR REMARK 3 L11: 8.1640 L22: 6.3536 REMARK 3 L33: 8.9488 L12: 1.5393 REMARK 3 L13: 6.5897 L23: -3.4371 REMARK 3 S TENSOR REMARK 3 S11: -0.0885 S12: 0.9470 S13: -1.1187 REMARK 3 S21: -1.0523 S22: 0.0498 S23: -0.1299 REMARK 3 S31: 0.1650 S32: -0.1837 S33: 0.1109 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.1730 -3.8129 168.5181 REMARK 3 T TENSOR REMARK 3 T11: 0.4093 T22: 0.5113 REMARK 3 T33: 0.4760 T12: -0.0486 REMARK 3 T13: 0.0496 T23: -0.1557 REMARK 3 L TENSOR REMARK 3 L11: 2.9856 L22: 7.3327 REMARK 3 L33: 8.9021 L12: 0.7150 REMARK 3 L13: 0.4394 L23: -3.0730 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: -0.2732 S13: -0.0844 REMARK 3 S21: 0.2055 S22: 0.2579 S23: 0.2413 REMARK 3 S31: -0.3689 S32: -0.4016 S33: -0.2891 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.0404 -46.8851 167.5791 REMARK 3 T TENSOR REMARK 3 T11: 0.5031 T22: 0.3154 REMARK 3 T33: 0.4144 T12: -0.0514 REMARK 3 T13: 0.0055 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 7.1744 L22: 4.4349 REMARK 3 L33: 8.9575 L12: 1.1372 REMARK 3 L13: -0.7970 L23: 1.5430 REMARK 3 S TENSOR REMARK 3 S11: -0.2184 S12: 0.1043 S13: 0.3545 REMARK 3 S21: -0.0546 S22: -0.1333 S23: 0.6315 REMARK 3 S31: 0.2275 S32: -0.2603 S33: 0.3289 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.3370 -29.2540 172.9267 REMARK 3 T TENSOR REMARK 3 T11: 0.9443 T22: 0.7108 REMARK 3 T33: 0.6946 T12: -0.2558 REMARK 3 T13: -0.0590 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 5.5723 L22: 3.8528 REMARK 3 L33: 2.1631 L12: 1.3258 REMARK 3 L13: -2.1434 L23: 0.5748 REMARK 3 S TENSOR REMARK 3 S11: 0.1594 S12: 0.0384 S13: 0.9655 REMARK 3 S21: -0.2710 S22: 0.2322 S23: 0.3821 REMARK 3 S31: -1.2199 S32: 0.7705 S33: -0.2755 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 101.5446 -34.0361 158.7539 REMARK 3 T TENSOR REMARK 3 T11: 0.6676 T22: 0.7581 REMARK 3 T33: 0.6771 T12: -0.3391 REMARK 3 T13: -0.0487 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 2.4978 L22: 3.8537 REMARK 3 L33: 3.9469 L12: 0.7257 REMARK 3 L13: -1.1801 L23: -0.1985 REMARK 3 S TENSOR REMARK 3 S11: -0.2055 S12: 0.4885 S13: 0.3394 REMARK 3 S21: -0.7944 S22: 0.3311 S23: -0.3172 REMARK 3 S31: -0.4929 S32: 1.0269 S33: -0.0169 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 233 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.7449 -46.6267 153.7598 REMARK 3 T TENSOR REMARK 3 T11: 0.7956 T22: 0.6802 REMARK 3 T33: 0.5046 T12: -0.1452 REMARK 3 T13: 0.0536 T23: 0.1021 REMARK 3 L TENSOR REMARK 3 L11: 2.5699 L22: 4.6735 REMARK 3 L33: 3.5504 L12: -0.1496 REMARK 3 L13: -0.5083 L23: 0.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.1505 S12: 0.5404 S13: -0.0647 REMARK 3 S21: -1.0540 S22: 0.4902 S23: -0.3310 REMARK 3 S31: -0.0325 S32: 0.0114 S33: -0.2382 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 292 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.1734 -38.8032 179.6179 REMARK 3 T TENSOR REMARK 3 T11: 0.6349 T22: 0.7605 REMARK 3 T33: 0.5653 T12: -0.0250 REMARK 3 T13: -0.0115 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 2.8659 L22: 3.4240 REMARK 3 L33: 7.3261 L12: 0.2247 REMARK 3 L13: -1.0056 L23: 3.3048 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.9761 S13: 0.0650 REMARK 3 S21: 0.8967 S22: 0.1854 S23: -0.0625 REMARK 3 S31: 0.3981 S32: 0.8292 S33: -0.2712 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 171-173 FROM CHAIN A AND REMARK 3 RESIDUES 170-173 FROM CHAIN B ARE NOT IN THE STRUCTURE SINCE REMARK 3 THERE ARE NO ELECTRON DENSITY TO FIGURE OUT WHERE THEY REALLY ARE REMARK 4 REMARK 4 5G2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-16. REMARK 100 THE DEPOSITION ID IS D_1290065925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87292 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13847 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: APO STRUCTURE OF NAGZ FROM PSEUDOMONAS AERUGINOSA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000 100 MM SODIUM CACODYLATE REMARK 280 PH 6.0 200 MM SODIUM ACETATE PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.27500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ALA A 171 REMARK 465 ASP A 172 REMARK 465 SER A 173 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLU B 170 REMARK 465 ALA B 171 REMARK 465 ASP B 172 REMARK 465 SER B 173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 -166.11 -122.90 REMARK 500 PHE A 33 -168.47 -128.11 REMARK 500 GLU A 38 -48.95 -140.10 REMARK 500 GLU A 64 -151.09 -109.30 REMARK 500 VAL A 68 78.45 -100.23 REMARK 500 ARG A 72 -52.15 -127.29 REMARK 500 ASN A 89 40.47 -88.87 REMARK 500 PHE A 133 -73.35 -76.01 REMARK 500 SER A 190 -84.98 -117.41 REMARK 500 VAL A 215 -56.57 -122.23 REMARK 500 ASP A 238 49.98 -109.42 REMARK 500 HIS A 252 68.24 -109.47 REMARK 500 GLN A 329 64.61 60.40 REMARK 500 LEU B 7 -164.75 -124.18 REMARK 500 PHE B 33 -169.63 -127.90 REMARK 500 GLU B 38 -46.37 -141.10 REMARK 500 GLN B 69 106.16 -51.09 REMARK 500 ARG B 72 -58.50 -125.89 REMARK 500 GLN B 123 30.80 -78.93 REMARK 500 SER B 190 -83.54 -120.38 REMARK 500 VAL B 215 -56.10 -121.66 REMARK 500 ASP B 238 48.96 -109.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 N-ACETYL-D-GLUCOSAMINE (NAG): NAG COMES FROM THE HYDROLYSIS REMARK 600 OF THE SUBSTRATE NAG-ANHYDROMUR PENTAPEPTIDE THAT WAS USED REMARK 600 FOR THE SOAKING REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE CONTAINS A HIS-TAG AT THE N-TERMINUS REMARK 999 CONTAINING A THROMBIN CLEAVAGE SITE DBREF 5G2M A 1 332 UNP Q9HZK0 NAGZ_PSEAE 1 332 DBREF 5G2M B 1 332 UNP Q9HZK0 NAGZ_PSEAE 1 332 SEQADV 5G2M MET A -20 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M GLY A -19 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M SER A -18 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M SER A -17 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS A -16 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS A -15 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS A -14 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS A -13 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS A -12 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS A -11 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M SER A -10 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M SER A -9 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M GLY A -8 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M LEU A -7 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M VAL A -6 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M PRO A -5 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M ARG A -4 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M GLY A -3 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M SER A -2 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS A -1 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M MET B -20 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M GLY B -19 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M SER B -18 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M SER B -17 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS B -16 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS B -15 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS B -14 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS B -13 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS B -12 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS B -11 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M SER B -10 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M SER B -9 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M GLY B -8 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M LEU B -7 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M VAL B -6 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M PRO B -5 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M ARG B -4 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M GLY B -3 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M SER B -2 UNP Q9HZK0 EXPRESSION TAG SEQADV 5G2M HIS B -1 UNP Q9HZK0 EXPRESSION TAG SEQRES 1 A 352 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 352 LEU VAL PRO ARG GLY SER HIS MET GLN GLY SER LEU MET SEQRES 3 A 352 LEU ASP ILE GLY GLY THR TRP LEU THR ALA GLU ASP ARG SEQRES 4 A 352 GLN ILE LEU ARG HIS PRO GLU VAL GLY GLY LEU ILE ILE SEQRES 5 A 352 PHE ALA ARG ASN ILE GLU HIS PRO ALA GLN VAL ARG GLU SEQRES 6 A 352 LEU CYS ALA ALA ILE ARG ALA ILE ARG PRO ASP LEU LEU SEQRES 7 A 352 LEU ALA VAL ASP GLN GLU GLY GLY ARG VAL GLN ARG LEU SEQRES 8 A 352 ARG GLN GLY PHE VAL ARG LEU PRO ALA MET ARG ALA ILE SEQRES 9 A 352 ALA ASP ASN PRO ASN ALA GLU GLU LEU ALA GLU HIS CYS SEQRES 10 A 352 GLY TRP LEU MET ALA THR GLU VAL GLN ALA VAL GLY LEU SEQRES 11 A 352 ASP LEU SER PHE ALA PRO VAL LEU ASP LEU ASP HIS GLN SEQRES 12 A 352 ARG SER ALA VAL VAL GLY SER ARG ALA PHE GLU GLY ASP SEQRES 13 A 352 PRO GLU ARG ALA ALA LEU LEU ALA GLY ALA PHE ILE ARG SEQRES 14 A 352 GLY MET HIS ALA ALA GLY MET ALA ALA THR GLY LYS HIS SEQRES 15 A 352 PHE PRO GLY HIS GLY TRP ALA GLU ALA ASP SER HIS VAL SEQRES 16 A 352 ALA ILE PRO GLU ASP ALA ARG SER LEU GLU GLU ILE ARG SEQRES 17 A 352 ARG SER ASP LEU VAL PRO PHE ALA ARG LEU ALA GLY GLN SEQRES 18 A 352 LEU ASP ALA LEU MET PRO ALA HIS VAL ILE TYR PRO GLN SEQRES 19 A 352 VAL ASP PRO GLN PRO ALA GLY PHE SER ARG ARG TRP LEU SEQRES 20 A 352 GLN GLU ILE LEU ARG GLY GLU LEU LYS PHE ASP GLY VAL SEQRES 21 A 352 ILE PHE SER ASP ASP LEU SER MET ALA GLY ALA HIS VAL SEQRES 22 A 352 VAL GLY ASP ALA ALA SER ARG ILE GLU ALA ALA LEU ALA SEQRES 23 A 352 ALA GLY CYS ASP MET GLY LEU VAL CYS ASN ASP ARG ALA SEQRES 24 A 352 SER ALA GLU LEU ALA LEU ALA ALA LEU GLN ARG LEU LYS SEQRES 25 A 352 VAL THR PRO PRO SER ARG LEU GLN ARG MET ARG GLY LYS SEQRES 26 A 352 GLY TYR ALA ASN THR ASP TYR ARG GLN GLN PRO ARG TRP SEQRES 27 A 352 LEU GLU ALA LEU SER ALA LEU ARG ALA ALA GLN LEU ILE SEQRES 28 A 352 ASP SEQRES 1 B 352 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 352 LEU VAL PRO ARG GLY SER HIS MET GLN GLY SER LEU MET SEQRES 3 B 352 LEU ASP ILE GLY GLY THR TRP LEU THR ALA GLU ASP ARG SEQRES 4 B 352 GLN ILE LEU ARG HIS PRO GLU VAL GLY GLY LEU ILE ILE SEQRES 5 B 352 PHE ALA ARG ASN ILE GLU HIS PRO ALA GLN VAL ARG GLU SEQRES 6 B 352 LEU CYS ALA ALA ILE ARG ALA ILE ARG PRO ASP LEU LEU SEQRES 7 B 352 LEU ALA VAL ASP GLN GLU GLY GLY ARG VAL GLN ARG LEU SEQRES 8 B 352 ARG GLN GLY PHE VAL ARG LEU PRO ALA MET ARG ALA ILE SEQRES 9 B 352 ALA ASP ASN PRO ASN ALA GLU GLU LEU ALA GLU HIS CYS SEQRES 10 B 352 GLY TRP LEU MET ALA THR GLU VAL GLN ALA VAL GLY LEU SEQRES 11 B 352 ASP LEU SER PHE ALA PRO VAL LEU ASP LEU ASP HIS GLN SEQRES 12 B 352 ARG SER ALA VAL VAL GLY SER ARG ALA PHE GLU GLY ASP SEQRES 13 B 352 PRO GLU ARG ALA ALA LEU LEU ALA GLY ALA PHE ILE ARG SEQRES 14 B 352 GLY MET HIS ALA ALA GLY MET ALA ALA THR GLY LYS HIS SEQRES 15 B 352 PHE PRO GLY HIS GLY TRP ALA GLU ALA ASP SER HIS VAL SEQRES 16 B 352 ALA ILE PRO GLU ASP ALA ARG SER LEU GLU GLU ILE ARG SEQRES 17 B 352 ARG SER ASP LEU VAL PRO PHE ALA ARG LEU ALA GLY GLN SEQRES 18 B 352 LEU ASP ALA LEU MET PRO ALA HIS VAL ILE TYR PRO GLN SEQRES 19 B 352 VAL ASP PRO GLN PRO ALA GLY PHE SER ARG ARG TRP LEU SEQRES 20 B 352 GLN GLU ILE LEU ARG GLY GLU LEU LYS PHE ASP GLY VAL SEQRES 21 B 352 ILE PHE SER ASP ASP LEU SER MET ALA GLY ALA HIS VAL SEQRES 22 B 352 VAL GLY ASP ALA ALA SER ARG ILE GLU ALA ALA LEU ALA SEQRES 23 B 352 ALA GLY CYS ASP MET GLY LEU VAL CYS ASN ASP ARG ALA SEQRES 24 B 352 SER ALA GLU LEU ALA LEU ALA ALA LEU GLN ARG LEU LYS SEQRES 25 B 352 VAL THR PRO PRO SER ARG LEU GLN ARG MET ARG GLY LYS SEQRES 26 B 352 GLY TYR ALA ASN THR ASP TYR ARG GLN GLN PRO ARG TRP SEQRES 27 B 352 LEU GLU ALA LEU SER ALA LEU ARG ALA ALA GLN LEU ILE SEQRES 28 B 352 ASP HET NAG A1333 15 HET NAG B1333 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) HELIX 1 1 THR A 15 ARG A 23 1 9 HELIX 2 2 PHE A 33 ILE A 37 5 5 HELIX 3 3 HIS A 39 ARG A 54 1 16 HELIX 4 4 ALA A 80 ASP A 86 1 7 HELIX 5 5 ASN A 89 ALA A 107 1 19 HELIX 6 6 VAL A 128 ALA A 132 5 5 HELIX 7 7 ASP A 136 ALA A 154 1 19 HELIX 8 8 SER A 183 SER A 190 1 8 HELIX 9 9 LEU A 192 LEU A 198 1 7 HELIX 10 10 SER A 223 GLN A 228 1 6 HELIX 11 11 GLU A 229 LEU A 235 1 7 HELIX 12 12 ASP A 256 GLY A 268 1 13 HELIX 13 13 ASP A 277 LYS A 292 1 16 HELIX 14 14 PRO A 296 ARG A 303 5 8 HELIX 15 15 GLN A 315 ALA A 328 1 14 HELIX 16 16 THR B 15 ARG B 23 1 9 HELIX 17 17 PHE B 33 ILE B 37 5 5 HELIX 18 18 HIS B 39 ALA B 52 1 14 HELIX 19 19 ALA B 80 ASP B 86 1 7 HELIX 20 20 ASN B 89 ALA B 107 1 19 HELIX 21 21 VAL B 128 ALA B 132 5 5 HELIX 22 22 ASP B 136 ALA B 154 1 19 HELIX 23 23 SER B 183 SER B 190 1 8 HELIX 24 24 LEU B 192 LEU B 198 1 7 HELIX 25 25 SER B 223 GLN B 228 1 6 HELIX 26 26 ASP B 256 GLY B 268 1 13 HELIX 27 27 ASP B 277 LYS B 292 1 16 HELIX 28 28 PRO B 296 ARG B 303 5 8 HELIX 29 29 GLN B 315 ALA B 328 1 14 SHEET 1 AA 2 MET A 1 GLN A 2 0 SHEET 2 AA 2 VAL A 293 THR A 294 1 N THR A 294 O MET A 1 SHEET 1 AB 4 LEU A 58 VAL A 61 0 SHEET 2 AB 4 VAL A 27 ILE A 32 1 O GLY A 28 N LEU A 58 SHEET 3 AB 4 SER A 4 LEU A 7 1 O LEU A 5 N GLY A 28 SHEET 4 AB 4 MET A 271 LEU A 273 1 O GLY A 272 N MET A 6 SHEET 1 AC 3 THR A 159 PHE A 163 0 SHEET 2 AC 3 ALA A 204 PRO A 207 1 O ALA A 204 N GLY A 160 SHEET 3 AC 3 VAL A 240 ILE A 241 1 O VAL A 240 N LEU A 205 SHEET 1 AD 2 ILE A 211 TYR A 212 0 SHEET 2 AD 2 ASP A 216 PRO A 219 -1 O ASP A 216 N TYR A 212 SHEET 1 BA 2 MET B 1 GLN B 2 0 SHEET 2 BA 2 VAL B 293 THR B 294 1 N THR B 294 O MET B 1 SHEET 1 BB 5 LEU B 112 SER B 113 0 SHEET 2 BB 5 LEU B 58 VAL B 61 1 O LEU B 59 N LEU B 112 SHEET 3 BB 5 VAL B 27 ILE B 31 1 O GLY B 28 N LEU B 58 SHEET 4 BB 5 SER B 4 LEU B 7 1 O LEU B 5 N GLY B 28 SHEET 5 BB 5 MET B 271 LEU B 273 1 O GLY B 272 N MET B 6 SHEET 1 BC 3 THR B 159 PHE B 163 0 SHEET 2 BC 3 ALA B 204 PRO B 207 1 O ALA B 204 N GLY B 160 SHEET 3 BC 3 VAL B 240 ILE B 241 1 O VAL B 240 N LEU B 205 SHEET 1 BD 2 ILE B 211 TYR B 212 0 SHEET 2 BD 2 ASP B 216 PRO B 219 -1 O ASP B 216 N TYR B 212 CISPEP 1 ALA A 115 PRO A 116 0 0.60 CISPEP 2 LYS A 161 HIS A 162 0 -2.27 CISPEP 3 PHE A 163 PRO A 164 0 -1.11 CISPEP 4 ALA B 115 PRO B 116 0 0.53 CISPEP 5 LYS B 161 HIS B 162 0 -3.77 CISPEP 6 PHE B 163 PRO B 164 0 -1.04 CRYST1 65.317 74.550 76.032 90.00 110.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015310 0.000000 0.005657 0.00000 SCALE2 0.000000 0.013414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014022 0.00000