HEADER TRANSFERASE 13-APR-16 5G2R TITLE CRYSTAL STRUCTURE OF THE MO-INSERTASE DOMAIN CNX1E FROM ARABIDOPSIS TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS PROTEIN CNX1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MOLYBDOPTERIN MOLYBDOTRANSFERASE DOMAIN CNX1E, RESIDUE 1- COMPND 5 451; COMPND 6 EC: 2.10.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: LER-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RK5204; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PQE80 DERIVATIVE KEYWDS TRANSFERASE, CNX1, CNX1E, GEPHYRIN, GEPHE, MOLYBDENUM METABOLISM, KEYWDS 2 MOEA, MO-INSERTASE, MOCO, MOLYBDENUM COFACTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.KRAUSZE,S.SAHA,C.PROBST,T.KRUSE,D.W.HEINZ,R.R.MENDEL REVDAT 2 10-JAN-24 5G2R 1 REMARK REVDAT 1 15-FEB-17 5G2R 0 JRNL AUTH J.KRAUSZE,C.PROBST,U.CURTH,J.REICHELT,S.SAHA,D.SCHAFFLIK, JRNL AUTH 2 D.W.HEINZ,R.R.MENDEL,T.KRUSE JRNL TITL DIMERIZATION OF THE PLANT MOLYBDENUM INSERTASE CNX1E IS JRNL TITL 2 REQUIRED FOR SYNTHESIS OF THE MOLYBDENUM COFACTOR. JRNL REF BIOCHEM.J. V. 474 163 2017 JRNL REFN ISSN 0264-6021 JRNL PMID 27803248 JRNL DOI 10.1042/BCJ20160846 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 19066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9430 - 4.6827 0.98 2792 148 0.1829 0.1880 REMARK 3 2 4.6827 - 3.7184 0.96 2608 137 0.1859 0.2210 REMARK 3 3 3.7184 - 3.2489 0.98 2637 138 0.2449 0.2708 REMARK 3 4 3.2489 - 2.9520 0.97 2622 138 0.2912 0.2988 REMARK 3 5 2.9520 - 2.7405 0.94 2501 132 0.3471 0.3423 REMARK 3 6 2.7405 - 2.5790 0.93 2488 131 0.3474 0.4394 REMARK 3 7 2.5790 - 2.4499 0.93 2464 130 0.3685 0.3826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3108 REMARK 3 ANGLE : 0.462 4245 REMARK 3 CHIRALITY : 0.043 517 REMARK 3 PLANARITY : 0.003 548 REMARK 3 DIHEDRAL : 9.410 1886 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.6399 16.7892 132.5558 REMARK 3 T TENSOR REMARK 3 T11: 0.3636 T22: 0.5359 REMARK 3 T33: 0.5149 T12: 0.0862 REMARK 3 T13: -0.0001 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.1990 L22: 0.4062 REMARK 3 L33: 0.6198 L12: 0.1565 REMARK 3 L13: 0.0414 L23: 0.3975 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: -0.2012 S13: 0.0659 REMARK 3 S21: 0.0937 S22: -0.1009 S23: 0.1506 REMARK 3 S31: -0.3136 S32: -0.4143 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.9196 17.7585 175.2096 REMARK 3 T TENSOR REMARK 3 T11: 0.7312 T22: 0.7732 REMARK 3 T33: 0.5008 T12: -0.1676 REMARK 3 T13: -0.0336 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 0.4559 L22: 0.2121 REMARK 3 L33: 0.3556 L12: 0.0484 REMARK 3 L13: -0.1361 L23: -0.2736 REMARK 3 S TENSOR REMARK 3 S11: 0.1404 S12: -0.6311 S13: 0.2778 REMARK 3 S21: 0.4766 S22: -0.1455 S23: -0.0680 REMARK 3 S31: 0.0323 S32: -0.4362 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.2970 18.0720 155.7624 REMARK 3 T TENSOR REMARK 3 T11: 0.4785 T22: 0.4379 REMARK 3 T33: 0.4960 T12: -0.0508 REMARK 3 T13: 0.0238 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.0128 L22: 0.5350 REMARK 3 L33: 0.3797 L12: 0.1827 REMARK 3 L13: 0.6193 L23: 0.1519 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: -0.2732 S13: 0.2337 REMARK 3 S21: 0.1816 S22: -0.1681 S23: 0.0074 REMARK 3 S31: -0.2186 S32: -0.3124 S33: 0.0048 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.8425 11.8674 111.0279 REMARK 3 T TENSOR REMARK 3 T11: 0.3719 T22: 0.4581 REMARK 3 T33: 0.4410 T12: 0.0632 REMARK 3 T13: -0.0638 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.9052 L22: 1.3550 REMARK 3 L33: 1.5170 L12: 0.1632 REMARK 3 L13: -0.2799 L23: -0.3006 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 0.1608 S13: -0.0710 REMARK 3 S21: -0.2578 S22: -0.0142 S23: 0.2836 REMARK 3 S31: 0.0164 S32: -0.2875 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 345 THROUGH 415 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.1858 33.0420 117.9627 REMARK 3 T TENSOR REMARK 3 T11: 0.6652 T22: 0.4786 REMARK 3 T33: 0.5652 T12: -0.0042 REMARK 3 T13: 0.0554 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.7202 L22: 0.7495 REMARK 3 L33: 0.9186 L12: 0.2924 REMARK 3 L13: -0.3032 L23: -0.3121 REMARK 3 S TENSOR REMARK 3 S11: 0.1142 S12: 0.1663 S13: 0.2406 REMARK 3 S21: 0.0382 S22: -0.0437 S23: 0.0326 REMARK 3 S31: -0.5938 S32: -0.0559 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 416 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.3412 36.5080 118.5160 REMARK 3 T TENSOR REMARK 3 T11: 0.7110 T22: 0.4307 REMARK 3 T33: 0.7099 T12: 0.0361 REMARK 3 T13: 0.0415 T23: 0.0720 REMARK 3 L TENSOR REMARK 3 L11: 0.2453 L22: 0.4764 REMARK 3 L33: 0.4877 L12: 0.2067 REMARK 3 L13: -0.0003 L23: 0.3736 REMARK 3 S TENSOR REMARK 3 S11: 0.1694 S12: 0.4428 S13: 0.1049 REMARK 3 S21: 0.8371 S22: -0.1515 S23: 0.2584 REMARK 3 S31: -1.0061 S32: 0.5244 S33: 0.0022 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5G2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-16. REMARK 100 THE DEPOSITION ID IS D_1290066683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 4.710 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.72 REMARK 200 R MERGE FOR SHELL (I) : 0.89000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1FC5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M LITHIUM SULFATE; 15 %(V/V) PEG REMARK 280 600; 10 % (V/V) GLYCEROL; 0.1 M HEPES, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.94000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.70500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.22500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.94000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.70500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.22500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.94000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.70500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.22500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.94000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.70500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 197.64000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 260.90000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A1501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2057 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 SER A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 CYS A 6 REMARK 465 CYS A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 LYS A 13 REMARK 465 SER A 131 REMARK 465 THR A 132 REMARK 465 GLU A 133 REMARK 465 THR A 309 REMARK 465 GLU A 310 REMARK 465 SER A 311 REMARK 465 MET A 312 REMARK 465 SER A 440 REMARK 465 ILE A 441 REMARK 465 ASP A 442 REMARK 465 LYS A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 LEU A 447 REMARK 465 SER A 448 REMARK 465 GLU A 449 REMARK 465 PRO A 450 REMARK 465 GLY A 451 REMARK 465 SER A 452 REMARK 465 THR A 453 REMARK 465 SER A 454 REMARK 465 GLY A 455 REMARK 465 GLY A 456 REMARK 465 SER A 457 REMARK 465 ALA A 458 REMARK 465 TRP A 459 REMARK 465 SER A 460 REMARK 465 HIS A 461 REMARK 465 PRO A 462 REMARK 465 GLN A 463 REMARK 465 PHE A 464 REMARK 465 GLU A 465 REMARK 465 LYS A 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 116 CG OD1 OD2 REMARK 470 VAL A 126 CG1 CG2 REMARK 470 LYS A 135 CE NZ REMARK 470 LYS A 144 CD CE NZ REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 245 CD CE NZ REMARK 470 LYS A 277 CE NZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 290 CD CE NZ REMARK 470 LYS A 294 CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LEU A 313 CG CD1 CD2 REMARK 470 LYS A 364 CG CD CE NZ REMARK 470 LYS A 378 CE NZ REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 ALA A 411 CB REMARK 470 PHE A 439 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 -39.90 66.77 REMARK 500 ASP A 129 -139.17 -158.32 REMARK 500 SER A 269 -143.10 -96.01 REMARK 500 LYS A 297 -51.80 -171.33 REMARK 500 LEU A 299 105.24 -162.91 REMARK 500 SER A 408 18.65 58.06 REMARK 500 ILE A 436 47.90 -107.74 REMARK 500 ALA A 438 91.34 -65.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2027 O REMARK 620 2 HOH A2028 O 93.0 REMARK 620 3 HOH A2040 O 88.6 89.1 REMARK 620 4 HOH A2042 O 90.0 177.1 90.7 REMARK 620 5 HOH A2058 O 179.3 87.0 90.7 90.0 REMARK 620 6 HOH A2059 O 88.0 90.8 176.6 89.5 92.7 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AG" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1440 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G2S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MO-INSERTASE DOMAIN CNX1E FROM ARABIDOPSIS REMARK 900 THALIANA IN COMPLEX WITH MOLYBDATE DBREF 5G2R A 1 451 UNP Q39054 CNX1_ARATH 1 451 SEQADV 5G2R MET A -4 UNP Q39054 EXPRESSION TAG SEQADV 5G2R SER A -3 UNP Q39054 EXPRESSION TAG SEQADV 5G2R ARG A -2 UNP Q39054 EXPRESSION TAG SEQADV 5G2R GLY A -1 UNP Q39054 EXPRESSION TAG SEQADV 5G2R SER A 0 UNP Q39054 EXPRESSION TAG SEQADV 5G2R SER A 452 UNP Q39054 EXPRESSION TAG SEQADV 5G2R THR A 453 UNP Q39054 EXPRESSION TAG SEQADV 5G2R SER A 454 UNP Q39054 EXPRESSION TAG SEQADV 5G2R GLY A 455 UNP Q39054 EXPRESSION TAG SEQADV 5G2R GLY A 456 UNP Q39054 EXPRESSION TAG SEQADV 5G2R SER A 457 UNP Q39054 EXPRESSION TAG SEQADV 5G2R ALA A 458 UNP Q39054 EXPRESSION TAG SEQADV 5G2R TRP A 459 UNP Q39054 EXPRESSION TAG SEQADV 5G2R SER A 460 UNP Q39054 EXPRESSION TAG SEQADV 5G2R HIS A 461 UNP Q39054 EXPRESSION TAG SEQADV 5G2R PRO A 462 UNP Q39054 EXPRESSION TAG SEQADV 5G2R GLN A 463 UNP Q39054 EXPRESSION TAG SEQADV 5G2R PHE A 464 UNP Q39054 EXPRESSION TAG SEQADV 5G2R GLU A 465 UNP Q39054 EXPRESSION TAG SEQADV 5G2R LYS A 466 UNP Q39054 EXPRESSION TAG SEQRES 1 A 471 MET SER ARG GLY SER MET GLU GLY GLN GLY CYS CYS GLY SEQRES 2 A 471 GLY GLY GLY GLY LYS THR GLU MET ILE PRO THR GLU GLU SEQRES 3 A 471 ALA LEU ARG ILE VAL PHE GLY VAL SER LYS ARG LEU PRO SEQRES 4 A 471 PRO VAL ILE VAL SER LEU TYR GLU ALA LEU GLY LYS VAL SEQRES 5 A 471 LEU ALA GLU ASP ILE ARG ALA PRO ASP PRO LEU PRO PRO SEQRES 6 A 471 TYR PRO ALA SER VAL LYS ASP GLY TYR ALA VAL VAL ALA SEQRES 7 A 471 SER ASP GLY PRO GLY GLU TYR PRO VAL ILE THR GLU SER SEQRES 8 A 471 ARG ALA GLY ASN ASP GLY LEU GLY VAL THR VAL THR PRO SEQRES 9 A 471 GLY THR VAL ALA TYR VAL THR THR GLY GLY PRO ILE PRO SEQRES 10 A 471 ASP GLY ALA ASP ALA VAL VAL GLN VAL GLU ASP THR LYS SEQRES 11 A 471 VAL ILE GLY ASP VAL SER THR GLU SER LYS ARG VAL LYS SEQRES 12 A 471 ILE LEU ILE GLN THR LYS LYS GLY THR ASP ILE ARG ARG SEQRES 13 A 471 VAL GLY CYS ASP ILE GLU LYS ASP ALA THR VAL LEU THR SEQRES 14 A 471 THR GLY GLU ARG ILE GLY ALA SER GLU ILE GLY LEU LEU SEQRES 15 A 471 ALA THR ALA GLY VAL THR MET VAL LYS VAL TYR PRO MET SEQRES 16 A 471 PRO ILE VAL ALA ILE LEU SER THR GLY ASP GLU LEU VAL SEQRES 17 A 471 GLU PRO THR ALA GLY THR LEU GLY ARG GLY GLN ILE ARG SEQRES 18 A 471 ASP SER ASN ARG ALA MET LEU VAL ALA ALA VAL MET GLN SEQRES 19 A 471 GLN GLN CYS LYS VAL VAL ASP LEU GLY ILE VAL ARG ASP SEQRES 20 A 471 ASP ARG LYS GLU LEU GLU LYS VAL LEU ASP GLU ALA VAL SEQRES 21 A 471 SER SER GLY VAL ASP ILE ILE LEU THR SER GLY GLY VAL SEQRES 22 A 471 SER MET GLY ASP ARG ASP PHE VAL LYS PRO LEU LEU GLU SEQRES 23 A 471 GLU LYS GLY LYS VAL TYR PHE SER LYS VAL LEU MET LYS SEQRES 24 A 471 PRO GLY LYS PRO LEU THR PHE ALA GLU ILE ARG ALA LYS SEQRES 25 A 471 PRO THR GLU SER MET LEU GLY LYS THR VAL LEU ALA PHE SEQRES 26 A 471 GLY LEU PRO GLY ASN PRO VAL SER CYS LEU VAL CYS PHE SEQRES 27 A 471 ASN ILE PHE VAL VAL PRO THR ILE ARG GLN LEU ALA GLY SEQRES 28 A 471 TRP THR SER PRO HIS PRO LEU ARG VAL ARG LEU ARG LEU SEQRES 29 A 471 GLN GLU PRO ILE LYS SER ASP PRO ILE ARG PRO GLU PHE SEQRES 30 A 471 HIS ARG ALA ILE ILE LYS TRP LYS ASP ASN ASP GLY SER SEQRES 31 A 471 GLY THR PRO GLY PHE VAL ALA GLU SER THR GLY HIS GLN SEQRES 32 A 471 MET SER SER ARG LEU LEU SER MET ARG SER ALA ASN ALA SEQRES 33 A 471 LEU LEU GLU LEU PRO ALA THR GLY ASN VAL LEU SER ALA SEQRES 34 A 471 GLY SER SER VAL SER ALA ILE ILE VAL SER ASP ILE SER SEQRES 35 A 471 ALA PHE SER ILE ASP LYS LYS ALA SER LEU SER GLU PRO SEQRES 36 A 471 GLY SER THR SER GLY GLY SER ALA TRP SER HIS PRO GLN SEQRES 37 A 471 PHE GLU LYS HET SO4 A1440 5 HET GOL A1441 6 HET MG A1500 1 HET MG A1501 1 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 O4 S 2- FORMUL 3 GOL C3 H8 O3 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *59(H2 O) HELIX 1 1 THR A 19 SER A 30 1 12 HELIX 2 2 TYR A 41 LEU A 44 5 4 HELIX 3 3 GLY A 170 ALA A 180 1 11 HELIX 4 4 SER A 218 GLN A 230 1 13 HELIX 5 5 ASP A 243 SER A 257 1 15 HELIX 6 6 PHE A 275 GLY A 284 1 10 HELIX 7 7 ASN A 325 PHE A 336 1 12 HELIX 8 8 PHE A 336 ALA A 345 1 10 HELIX 9 9 ARG A 402 ARG A 407 5 6 SHEET 1 AA 7 ILE A 17 PRO A 18 0 SHEET 2 AA 7 LYS A 285 LEU A 292 1 O LYS A 290 N ILE A 17 SHEET 3 AA 7 PRO A 298 ALA A 306 -1 N LEU A 299 O SER A 289 SHEET 4 AA 7 LYS A 315 LEU A 322 -1 O LYS A 315 N ALA A 306 SHEET 5 AA 7 ILE A 261 SER A 265 1 O ILE A 262 N PHE A 320 SHEET 6 AA 7 VAL A 193 THR A 198 1 O ALA A 194 N LEU A 263 SHEET 7 AA 7 VAL A 234 VAL A 240 1 O VAL A 235 N ILE A 195 SHEET 1 AB 3 VAL A 36 SER A 39 0 SHEET 2 AB 3 MET A 184 TYR A 188 -1 O VAL A 185 N VAL A 38 SHEET 3 AB 3 VAL A 47 LEU A 48 -1 O VAL A 47 N TYR A 188 SHEET 1 AC 2 ILE A 52 ARG A 53 0 SHEET 2 AC 2 THR A 161 LEU A 163 -1 N VAL A 162 O ILE A 52 SHEET 1 AD 2 ALA A 63 SER A 64 0 SHEET 2 AD 2 ILE A 149 ARG A 150 -1 O ARG A 150 N ALA A 63 SHEET 1 AE 6 ALA A 117 GLN A 120 0 SHEET 2 AE 6 GLY A 68 VAL A 71 -1 O TYR A 69 N VAL A 119 SHEET 3 AE 6 VAL A 102 VAL A 105 -1 O ALA A 103 N ALA A 70 SHEET 4 AE 6 GLY A 78 SER A 86 1 O PRO A 81 N VAL A 102 SHEET 5 AE 6 ARG A 136 ILE A 139 -1 O VAL A 137 N TYR A 80 SHEET 6 AE 6 THR A 124 ILE A 127 -1 O LYS A 125 N LYS A 138 SHEET 1 AF 2 LEU A 202 VAL A 203 0 SHEET 2 AF 2 ILE A 215 ARG A 216 1 O ILE A 215 N VAL A 203 SHEET 1 AG 6 LEU A 353 LEU A 359 0 SHEET 2 AG 6 SER A 427 ILE A 432 -1 O VAL A 428 N LEU A 357 SHEET 3 AG 6 ALA A 411 LEU A 415 -1 O LEU A 412 N ILE A 431 SHEET 4 AG 6 GLU A 371 LYS A 380 -1 O GLU A 371 N LEU A 415 SHEET 5 AG 6 GLY A 389 SER A 394 -1 O GLY A 389 N LYS A 380 SHEET 6 AG 6 LEU A 353 LEU A 359 1 O ARG A 356 N PHE A 390 SHEET 1 AH 2 ILE A 363 LYS A 364 0 SHEET 2 AH 2 VAL A 421 LEU A 422 -1 O LEU A 422 N ILE A 363 LINK MG MG A1500 O HOH A2027 1555 1555 2.06 LINK MG MG A1500 O HOH A2028 1555 1555 2.06 LINK MG MG A1500 O HOH A2040 1555 1555 2.05 LINK MG MG A1500 O HOH A2042 1555 1555 2.05 LINK MG MG A1500 O HOH A2058 1555 1555 2.08 LINK MG MG A1500 O HOH A2059 1555 1555 2.06 CISPEP 1 LEU A 58 PRO A 59 0 -2.41 CISPEP 2 LYS A 294 PRO A 295 0 6.91 SITE 1 AC1 4 PRO A 295 GLY A 296 ARG A 369 SER A 400 SITE 1 AC2 4 GLY A 166 TRP A 347 THR A 348 SER A 349 SITE 1 AC3 6 HOH A2027 HOH A2028 HOH A2040 HOH A2042 SITE 2 AC3 6 HOH A2058 HOH A2059 SITE 1 AC4 1 ASP A 435 CRYST1 65.880 123.410 130.450 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007666 0.00000