HEADER TRANSFERASE 13-APR-16 5G2S TITLE CRYSTAL STRUCTURE OF THE MO-INSERTASE DOMAIN CNX1E FROM TITLE 2 ARABIDOPSIS THALIANA IN COMPLEX WITH MOLYBDATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS PROTEIN CNX1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MOLYBDOPTERIN MOLYBDOTRANSFERASE DOMAIN CNX1E, RESIDUE COMPND 5 1-451; COMPND 6 EC: 2.10.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: LER-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RK5204; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE80 DERIVATIVE KEYWDS TRANSFERASE, CNX1, CNX1E, GEPHYRIN, GEPHE, MOLYBDENUM METABOLISM, KEYWDS 2 MOEA, MO-INSERTASE, MOCO, MOLYBDENUM COFACTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.KRAUSZE,C.PROBST,T.KRUSE,D.W.HEINZ,R.R.MENDEL REVDAT 1 15-FEB-17 5G2S 0 JRNL AUTH J.KRAUSZE,C.PROBST,U.CURTH,J.REICHELT,S.SAHA,D.SCHAFFLIK, JRNL AUTH 2 D.W.HEINZ,R.R.MENDEL,T.KRUSE JRNL TITL DIMERIZATION OF THE PLANT MOLYBDENUM INSERTASE CNX1E IS JRNL TITL 2 REQUIRED FOR SYNTHESIS OF THE MOLYBDENUM COFACTOR. JRNL REF BIOCHEM.J. V. 474 163 2017 JRNL REFN ISSN 0264-6021 JRNL PMID 27803248 JRNL DOI 10.1042/BCJ20160846 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.838 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.802 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.36 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.39 REMARK 3 NUMBER OF REFLECTIONS : 24165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2255 REMARK 3 R VALUE (WORKING SET) : 0.2246 REMARK 3 FREE R VALUE : 0.2426 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE CCWORK REMARK 3 1 44.8080 - 5.8993 1.00 2570 136 0.1975 0.1974 0.918 REMARK 3 2 5.8993 - 4.6841 1.00 2569 139 0.2010 0.2303 0.897 REMARK 3 3 4.6841 - 4.0924 1.00 2550 134 0.1890 0.1896 0.920 REMARK 3 4 4.0924 - 3.7184 0.99 2570 135 0.2254 0.2799 0.892 REMARK 3 5 3.7184 - 3.4520 1.00 2558 130 0.2461 0.2840 0.881 REMARK 3 6 3.4520 - 3.2486 0.99 2573 130 0.2938 0.3369 0.855 REMARK 3 7 3.2486 - 3.0859 0.99 2481 134 0.2930 0.3177 0.844 REMARK 3 8 3.0859 - 2.9516 0.99 2576 133 0.3123 0.3290 0.858 REMARK 3 9 2.9516 - 2.8380 0.98 2512 135 0.3878 0.4129 0.815 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.44 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3009 REMARK 3 ANGLE : 0.938 4118 REMARK 3 CHIRALITY : 0.051 514 REMARK 3 PLANARITY : 0.005 535 REMARK 3 DIHEDRAL : 14.986 1809 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.0418 17.1970 142.1395 REMARK 3 T TENSOR REMARK 3 T11: 0.5981 T22: 0.8385 REMARK 3 T33: 0.7097 T12: 0.1104 REMARK 3 T13: 0.0986 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.7421 L22: 1.0710 REMARK 3 L33: 3.3308 L12: 0.0490 REMARK 3 L13: 0.9348 L23: -0.2102 REMARK 3 S TENSOR REMARK 3 S11: 0.1801 S12: -0.8381 S13: -0.0038 REMARK 3 S21: 0.2779 S22: 0.0824 S23: 0.1796 REMARK 3 S31: -0.3588 S32: -0.7419 S33: -0.1494 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.5378 16.4337 155.1773 REMARK 3 T TENSOR REMARK 3 T11: 0.7232 T22: 0.8365 REMARK 3 T33: 0.6492 T12: 0.0154 REMARK 3 T13: -0.0258 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 1.0255 L22: 0.7870 REMARK 3 L33: 1.7364 L12: 0.2995 REMARK 3 L13: 0.3172 L23: -0.5310 REMARK 3 S TENSOR REMARK 3 S11: 0.1132 S12: -0.5347 S13: 0.1688 REMARK 3 S21: 0.4344 S22: -0.1320 S23: -0.0060 REMARK 3 S31: -0.1664 S32: -0.1042 S33: 0.0749 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.6729 12.7594 113.5545 REMARK 3 T TENSOR REMARK 3 T11: 0.5575 T22: 0.7897 REMARK 3 T33: 0.7538 T12: 0.0675 REMARK 3 T13: -0.1016 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.8149 L22: 2.7089 REMARK 3 L33: 2.8511 L12: -0.1339 REMARK 3 L13: -0.6539 L23: 0.8021 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 0.2130 S13: -0.0428 REMARK 3 S21: -0.1970 S22: -0.0456 S23: 0.5012 REMARK 3 S31: -0.2288 S32: -0.4929 S33: -0.0272 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 345 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.4921 34.3109 119.2283 REMARK 3 T TENSOR REMARK 3 T11: 1.0959 T22: 0.8417 REMARK 3 T33: 0.8201 T12: -0.0511 REMARK 3 T13: 0.1133 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.2624 L22: 1.9242 REMARK 3 L33: 1.8864 L12: -0.2828 REMARK 3 L13: -0.5883 L23: -0.9044 REMARK 3 S TENSOR REMARK 3 S11: 0.3680 S12: -0.0398 S13: 0.4868 REMARK 3 S21: -0.2024 S22: -0.3187 S23: 0.1753 REMARK 3 S31: -0.5879 S32: 0.0072 S33: -0.1287 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.3348 33.4566 118.0069 REMARK 3 T TENSOR REMARK 3 T11: 1.0773 T22: 0.6454 REMARK 3 T33: 0.7208 T12: 0.0933 REMARK 3 T13: 0.0891 T23: 0.1510 REMARK 3 L TENSOR REMARK 3 L11: 2.9913 L22: 5.9908 REMARK 3 L33: 1.5853 L12: -0.3566 REMARK 3 L13: -1.8580 L23: -0.6034 REMARK 3 S TENSOR REMARK 3 S11: 0.4570 S12: 0.6282 S13: 0.9604 REMARK 3 S21: -0.1740 S22: 0.1945 S23: -0.0888 REMARK 3 S31: -1.5113 S32: -0.2106 S33: -0.2735 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5G2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-16. REMARK 100 THE PDBE ID CODE IS EBI-66676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.77 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : TOROIDAL FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 2M-F) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.84 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.88 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.72 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.39 REMARK 200 R MERGE FOR SHELL (I) : 0.95 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: DATA WERE PROCESSED UNDER THE ASSUMPTION THAT REMARK 200 FRIEDEL'S LAW BE FALSE TO IDENTIFY THE MOLYBDENUM SITE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM SODIUM MOLYBDATE; 5 MM REMARK 280 MAGNESIUM CHLORIDE; 0.2 M LITHIUM SULFATE; 50 %(V/V) PEG REMARK 280 300; 0.1 M HEPES, PH 7.3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.95000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.16500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.81000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.95000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.16500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.81000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.95000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.16500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.81000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.95000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.16500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 197.70000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 263.24000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 SER A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 CYS A 6 REMARK 465 CYS A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 GLY A 92 REMARK 465 LEU A 93 REMARK 465 GLY A 94 REMARK 465 GLY A 128 REMARK 465 ASP A 129 REMARK 465 VAL A 130 REMARK 465 SER A 131 REMARK 465 THR A 309 REMARK 465 GLU A 310 REMARK 465 SER A 311 REMARK 465 MET A 312 REMARK 465 SER A 440 REMARK 465 ILE A 441 REMARK 465 ASP A 442 REMARK 465 LYS A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 LEU A 447 REMARK 465 SER A 448 REMARK 465 GLU A 449 REMARK 465 PRO A 450 REMARK 465 GLY A 451 REMARK 465 SER A 452 REMARK 465 THR A 453 REMARK 465 SER A 454 REMARK 465 GLY A 455 REMARK 465 GLY A 456 REMARK 465 SER A 457 REMARK 465 ALA A 458 REMARK 465 TRP A 459 REMARK 465 SER A 460 REMARK 465 HIS A 461 REMARK 465 PRO A 462 REMARK 465 GLN A 463 REMARK 465 PHE A 464 REMARK 465 GLU A 465 REMARK 465 LYS A 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 66 CD CE NZ REMARK 470 ILE A 83 CG1 CG2 CD1 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 LYS A 145 CD CE NZ REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 LYS A 158 CD CE NZ REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 ARG A 273 CD NE CZ NH1 NH2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 LYS A 294 CE NZ REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LEU A 313 CG CD1 CD2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 ARG A 356 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 358 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 364 CG CD CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 ASP A 381 CG OD1 OD2 REMARK 470 ALA A 411 CB REMARK 470 PHE A 439 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 83 -78.80 -60.37 REMARK 500 VAL A 126 -80.18 -68.03 REMARK 500 GLU A 133 -120.21 -75.09 REMARK 500 SER A 269 -145.28 -114.45 REMARK 500 LEU A 299 102.09 -162.58 REMARK 500 SER A 349 71.72 -119.69 REMARK 500 ASN A 382 89.46 -168.48 REMARK 500 ASP A 383 -178.16 -174.67 REMARK 500 SER A 385 -98.28 171.12 REMARK 500 SER A 437 -98.46 51.85 REMARK 500 ALA A 438 -148.52 56.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MOO A1440 MO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MOO A1440 O1 REMARK 620 2 MOO A1440 O3 103.4 REMARK 620 3 MOO A1440 O2 114.4 114.1 REMARK 620 4 MOO A1440 O4 103.7 106.7 113.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2001 O REMARK 620 2 HOH A2002 O 89.1 REMARK 620 3 HOH A2004 O 90.7 89.4 REMARK 620 4 HOH A2006 O 89.9 177.6 88.5 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AG" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR LIGAND REMARK 800 MOO A1440 BOUND TO SER A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G2R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MO-INSERTASE DOMAIN CNX1E REMARK 900 FROM ARABIDOPSIS THALIANA DBREF 5G2S A 1 451 UNP Q39054 CNX1_ARATH 1 451 SEQADV 5G2S MET A -4 UNP Q39054 EXPRESSION TAG SEQADV 5G2S SER A -3 UNP Q39054 EXPRESSION TAG SEQADV 5G2S ARG A -2 UNP Q39054 EXPRESSION TAG SEQADV 5G2S GLY A -1 UNP Q39054 EXPRESSION TAG SEQADV 5G2S SER A 0 UNP Q39054 EXPRESSION TAG SEQADV 5G2S SER A 452 UNP Q39054 EXPRESSION TAG SEQADV 5G2S THR A 453 UNP Q39054 EXPRESSION TAG SEQADV 5G2S SER A 454 UNP Q39054 EXPRESSION TAG SEQADV 5G2S GLY A 455 UNP Q39054 EXPRESSION TAG SEQADV 5G2S GLY A 456 UNP Q39054 EXPRESSION TAG SEQADV 5G2S SER A 457 UNP Q39054 EXPRESSION TAG SEQADV 5G2S ALA A 458 UNP Q39054 EXPRESSION TAG SEQADV 5G2S TRP A 459 UNP Q39054 EXPRESSION TAG SEQADV 5G2S SER A 460 UNP Q39054 EXPRESSION TAG SEQADV 5G2S HIS A 461 UNP Q39054 EXPRESSION TAG SEQADV 5G2S PRO A 462 UNP Q39054 EXPRESSION TAG SEQADV 5G2S GLN A 463 UNP Q39054 EXPRESSION TAG SEQADV 5G2S PHE A 464 UNP Q39054 EXPRESSION TAG SEQADV 5G2S GLU A 465 UNP Q39054 EXPRESSION TAG SEQADV 5G2S LYS A 466 UNP Q39054 EXPRESSION TAG SEQRES 1 A 471 MET SER ARG GLY SER MET GLU GLY GLN GLY CYS CYS GLY SEQRES 2 A 471 GLY GLY GLY GLY LYS THR GLU MET ILE PRO THR GLU GLU SEQRES 3 A 471 ALA LEU ARG ILE VAL PHE GLY VAL SER LYS ARG LEU PRO SEQRES 4 A 471 PRO VAL ILE VAL SER LEU TYR GLU ALA LEU GLY LYS VAL SEQRES 5 A 471 LEU ALA GLU ASP ILE ARG ALA PRO ASP PRO LEU PRO PRO SEQRES 6 A 471 TYR PRO ALA SER VAL LYS ASP GLY TYR ALA VAL VAL ALA SEQRES 7 A 471 SER ASP GLY PRO GLY GLU TYR PRO VAL ILE THR GLU SER SEQRES 8 A 471 ARG ALA GLY ASN ASP GLY LEU GLY VAL THR VAL THR PRO SEQRES 9 A 471 GLY THR VAL ALA TYR VAL THR THR GLY GLY PRO ILE PRO SEQRES 10 A 471 ASP GLY ALA ASP ALA VAL VAL GLN VAL GLU ASP THR LYS SEQRES 11 A 471 VAL ILE GLY ASP VAL SER THR GLU SER LYS ARG VAL LYS SEQRES 12 A 471 ILE LEU ILE GLN THR LYS LYS GLY THR ASP ILE ARG ARG SEQRES 13 A 471 VAL GLY CYS ASP ILE GLU LYS ASP ALA THR VAL LEU THR SEQRES 14 A 471 THR GLY GLU ARG ILE GLY ALA SER GLU ILE GLY LEU LEU SEQRES 15 A 471 ALA THR ALA GLY VAL THR MET VAL LYS VAL TYR PRO MET SEQRES 16 A 471 PRO ILE VAL ALA ILE LEU SER THR GLY ASP GLU LEU VAL SEQRES 17 A 471 GLU PRO THR ALA GLY THR LEU GLY ARG GLY GLN ILE ARG SEQRES 18 A 471 ASP SER ASN ARG ALA MET LEU VAL ALA ALA VAL MET GLN SEQRES 19 A 471 GLN GLN CYS LYS VAL VAL ASP LEU GLY ILE VAL ARG ASP SEQRES 20 A 471 ASP ARG LYS GLU LEU GLU LYS VAL LEU ASP GLU ALA VAL SEQRES 21 A 471 SER SER GLY VAL ASP ILE ILE LEU THR SER GLY GLY VAL SEQRES 22 A 471 SER MET GLY ASP ARG ASP PHE VAL LYS PRO LEU LEU GLU SEQRES 23 A 471 GLU LYS GLY LYS VAL TYR PHE SER LYS VAL LEU MET LYS SEQRES 24 A 471 PRO GLY LYS PRO LEU THR PHE ALA GLU ILE ARG ALA LYS SEQRES 25 A 471 PRO THR GLU SER MET LEU GLY LYS THR VAL LEU ALA PHE SEQRES 26 A 471 GLY LEU PRO GLY ASN PRO VAL SER CYS LEU VAL CYS PHE SEQRES 27 A 471 ASN ILE PHE VAL VAL PRO THR ILE ARG GLN LEU ALA GLY SEQRES 28 A 471 TRP THR SER PRO HIS PRO LEU ARG VAL ARG LEU ARG LEU SEQRES 29 A 471 GLN GLU PRO ILE LYS SER ASP PRO ILE ARG PRO GLU PHE SEQRES 30 A 471 HIS ARG ALA ILE ILE LYS TRP LYS ASP ASN ASP GLY SER SEQRES 31 A 471 GLY THR PRO GLY PHE VAL ALA GLU SER THR GLY HIS GLN SEQRES 32 A 471 MET SER SER ARG LEU LEU SER MET ARG SER ALA ASN ALA SEQRES 33 A 471 LEU LEU GLU LEU PRO ALA THR GLY ASN VAL LEU SER ALA SEQRES 34 A 471 GLY SER SER VAL SER ALA ILE ILE VAL SER ASP ILE SER SEQRES 35 A 471 ALA PHE SER ILE ASP LYS LYS ALA SER LEU SER GLU PRO SEQRES 36 A 471 GLY SER THR SER GLY GLY SER ALA TRP SER HIS PRO GLN SEQRES 37 A 471 PHE GLU LYS HET MOO A1440 5 HET GOL A1441 6 HET MG A1500 1 HETNAM MOO MOLYBDATE ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN MOO MOLYBDATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MOO MO O4 2- FORMUL 3 GOL C3 H8 O3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *10(H2 O) HELIX 1 1 PRO A 18 SER A 30 1 13 HELIX 2 2 TYR A 41 LEU A 44 5 4 HELIX 3 3 GLY A 170 GLY A 181 1 12 HELIX 4 4 ASP A 217 GLN A 230 1 14 HELIX 5 5 ASP A 243 SER A 257 1 15 HELIX 6 6 PHE A 275 GLY A 284 1 10 HELIX 7 7 ASN A 325 ALA A 345 1 21 HELIX 8 8 ARG A 402 MET A 406 5 5 SHEET 1 AA 3 VAL A 36 SER A 39 0 SHEET 2 AA 3 MET A 184 TYR A 188 -1 O VAL A 185 N VAL A 38 SHEET 3 AA 3 VAL A 47 LEU A 48 -1 O VAL A 47 N TYR A 188 SHEET 1 AB 2 ILE A 52 ARG A 53 0 SHEET 2 AB 2 THR A 161 LEU A 163 -1 N VAL A 162 O ILE A 52 SHEET 1 AC 2 ALA A 63 SER A 64 0 SHEET 2 AC 2 ILE A 149 ARG A 150 -1 O ARG A 150 N ALA A 63 SHEET 1 AD 6 ALA A 117 GLN A 120 0 SHEET 2 AD 6 GLY A 68 VAL A 71 -1 O TYR A 69 N VAL A 119 SHEET 3 AD 6 VAL A 102 VAL A 105 -1 O ALA A 103 N ALA A 70 SHEET 4 AD 6 GLY A 78 SER A 86 1 O PRO A 81 N VAL A 102 SHEET 5 AD 6 ARG A 136 ILE A 139 -1 O VAL A 137 N TYR A 80 SHEET 6 AD 6 THR A 124 LYS A 125 -1 O LYS A 125 N LYS A 138 SHEET 1 AE 6 LYS A 233 VAL A 240 0 SHEET 2 AE 6 ILE A 192 THR A 198 1 O VAL A 193 N VAL A 235 SHEET 3 AE 6 ILE A 261 SER A 265 1 O ILE A 261 N ALA A 194 SHEET 4 AE 6 THR A 316 LEU A 322 1 O LEU A 318 N ILE A 262 SHEET 5 AE 6 PRO A 298 ARG A 305 -1 O THR A 300 N GLY A 321 SHEET 6 AE 6 LYS A 285 LYS A 290 -1 O LYS A 285 N GLU A 303 SHEET 1 AF 2 LEU A 202 VAL A 203 0 SHEET 2 AF 2 ILE A 215 ARG A 216 1 O ILE A 215 N VAL A 203 SHEET 1 AG 6 ARG A 354 LEU A 359 0 SHEET 2 AG 6 SER A 427 ILE A 432 -1 O VAL A 428 N LEU A 357 SHEET 3 AG 6 ALA A 411 GLU A 414 -1 O LEU A 412 N ILE A 431 SHEET 4 AG 6 PHE A 372 LYS A 380 -1 O HIS A 373 N LEU A 413 SHEET 5 AG 6 GLY A 389 SER A 394 -1 O GLY A 389 N LYS A 380 SHEET 6 AG 6 ARG A 354 LEU A 359 1 O ARG A 358 N ALA A 392 SHEET 1 AH 2 ILE A 363 LYS A 364 0 SHEET 2 AH 2 VAL A 421 LEU A 422 -1 O LEU A 422 N ILE A 363 LINK NH2 ARG A 369 O2 MOO A1440 1555 1555 1.30 LINK OG SER A 400 O4 MOO A1440 1555 1555 1.26 LINK MG MG A1500 O HOH A2004 1555 1555 2.12 LINK MG MG A1500 O HOH A2002 1555 1555 2.08 LINK MG MG A1500 O HOH A2006 1555 1555 2.11 LINK MG MG A1500 O HOH A2001 1555 1555 2.14 CISPEP 1 LEU A 58 PRO A 59 0 -1.38 CISPEP 2 LYS A 294 PRO A 295 0 1.99 SITE 1 AC1 3 GLU A 50 MET A 184 GLU A 253 SITE 1 AC2 4 HOH A2001 HOH A2002 HOH A2004 HOH A2006 SITE 1 AC3 4 PRO A 295 GLY A 296 ARG A 369 SER A 400 CRYST1 65.900 122.330 131.620 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015175 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007598 0.00000