HEADER HYDROLASE 14-APR-16 5G2U TITLE STRUCTURE OF BT1596,A 2-O GAG SULFATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-O GLYCOSAMINOGLYCAN SULFATASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SULFATASE; COMPND 5 EC: 3.1.6.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE, GLYCOSAMINOGLYCAN SULFATASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CARTMELL,E.C.LOWE,A.BASLE,L.I.CROUCH,M.CZJZEK,J.TURNBULL, AUTHOR 2 B.HENRISSAT,N.TERRAPON,S.THOMAS,H.MURRAY,S.J.FIRBANK,D.N.BOLAM REVDAT 3 10-JAN-24 5G2U 1 REMARK LINK REVDAT 2 12-DEC-18 5G2U 1 JRNL REVDAT 1 24-MAY-17 5G2U 0 JRNL AUTH A.CARTMELL,E.C.LOWE,A.BASLE,S.J.FIRBANK,D.A.NDEH,H.MURRAY, JRNL AUTH 2 N.TERRAPON,V.LOMBARD,B.HENRISSAT,J.E.TURNBULL,M.CZJZEK, JRNL AUTH 3 H.J.GILBERT,D.N.BOLAM JRNL TITL HOW MEMBERS OF THE HUMAN GUT MICROBIOTA OVERCOME THE JRNL TITL 2 SULFATION PROBLEM POSED BY GLYCOSAMINOGLYCANS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 7037 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28630303 JRNL DOI 10.1073/PNAS.1704367114 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 89661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4683 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6700 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 306 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.863 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3677 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3322 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5022 ; 1.563 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7655 ; 1.008 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 5.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;32.351 ;23.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;12.667 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.049 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4231 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 847 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1866 ; 1.906 ; 1.854 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1865 ; 1.887 ; 1.853 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2333 ; 2.329 ; 2.791 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1811 ; 2.095 ; 2.042 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6999 ; 2.550 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 142 ;30.936 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7136 ;10.201 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U REMARK 3 VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5G2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-16. REMARK 100 THE DEPOSITION ID IS D_1290066685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94403 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 44.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3B5Q REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 4000 15 % GLYCEROL 0.1 M REMARK 280 CITRIC ACID PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.00200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.50100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.50300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 PRO A 14 REMARK 465 GLN A 15 REMARK 465 GLN A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 ARG A 19 REMARK 465 GLN A 20 REMARK 465 GLN A 21 REMARK 465 PRO A 174 REMARK 465 LYS A 175 REMARK 465 LYS A 487 REMARK 465 ARG A 488 REMARK 465 LYS A 489 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CB CG CD OE1 OE2 REMARK 470 LYS A 23 CE NZ REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 THR A 100 OG1 CG2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 ASN A 283 CG OD1 ND2 REMARK 470 LYS A 325 CD CE NZ REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 LYS A 329 CD CE NZ REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 LYS A 374 NZ REMARK 470 LYS A 426 CD CE NZ REMARK 470 LYS A 433 CG CD CE NZ REMARK 470 LYS A 436 CG CD CE NZ REMARK 470 GLU A 440 OE1 OE2 REMARK 470 SER A 458 OG REMARK 470 LYS A 460 CG CD CE NZ REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 469 CG OD1 ND2 REMARK 470 GLU A 478 OE1 OE2 REMARK 470 ARG A 483 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 484 CG CD OE1 OE2 REMARK 470 ILE A 485 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 71 C SER A 72 N 0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 368 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 33 -6.51 81.64 REMARK 500 THR A 49 41.78 -142.54 REMARK 500 THR A 126 -86.58 -100.20 REMARK 500 ALA A 297 -8.48 78.86 REMARK 500 THR A 303 -127.45 54.63 REMARK 500 HIS A 305 119.86 170.61 REMARK 500 ILE A 306 -51.62 70.88 REMARK 500 HIS A 384 -68.37 -133.95 REMARK 500 GLU A 386 -60.45 -96.79 REMARK 500 ARG A 468 39.15 -142.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2070 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1487 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 233 SG REMARK 620 2 CYS A 234 SG 131.6 REMARK 620 3 HIS A 470 NE2 102.1 97.5 REMARK 620 4 HIS A 477 ND1 111.2 106.1 104.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1488 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G2T RELATED DB: PDB REMARK 900 STRUCTURE OF BT4656 IN COMPLEX WITH ITS SUBSTRATE D- GLUCOSAMINE-2- REMARK 900 N, 6-O-DISULFATE. REMARK 900 RELATED ID: 5G2V RELATED DB: PDB REMARK 900 STRUCTURE OF BT4656 IN COMPLEX WITH ITS SUBSTRATE D- GLUCOSAMINE-2- REMARK 900 N, 6-O-DISULFATE. DBREF 5G2U A 21 489 UNP Q8A7C8 Q8A7C8_BACTN 13 481 SEQADV 5G2U MET A 1 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U GLY A 2 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U SER A 3 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U SER A 4 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U HIS A 5 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U HIS A 6 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U HIS A 7 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U HIS A 8 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U HIS A 9 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U HIS A 10 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U SER A 11 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U SER A 12 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U GLY A 13 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U PRO A 14 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U GLN A 15 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U GLN A 16 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U GLY A 17 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U LEU A 18 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U ARG A 19 UNP Q8A7C8 EXPRESSION TAG SEQADV 5G2U GLN A 20 UNP Q8A7C8 EXPRESSION TAG SEQRES 1 A 489 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 489 PRO GLN GLN GLY LEU ARG GLN GLN GLU LYS PRO ASN PHE SEQRES 3 A 489 LEU ILE ILE GLN CYS ASP HIS LEU THR GLN ARG VAL VAL SEQRES 4 A 489 GLY ALA TYR GLY GLN THR GLN GLY CYS THR LEU PRO ILE SEQRES 5 A 489 ASP GLU VAL ALA SER ARG GLY VAL ILE PHE SER ASN ALA SEQRES 6 A 489 TYR VAL GLY CYS PRO LEU SER GLN PRO SER ARG ALA ALA SEQRES 7 A 489 LEU TRP SER GLY MET MET PRO HIS GLN THR ASN VAL ARG SEQRES 8 A 489 SER ASN SER SER GLU PRO VAL ASN THR ARG LEU PRO GLU SEQRES 9 A 489 ASN VAL PRO THR LEU GLY SER LEU PHE SER GLU SER GLY SEQRES 10 A 489 TYR GLU ALA VAL HIS PHE GLY LYS THR HIS ASP MET GLY SEQRES 11 A 489 SER LEU ARG GLY PHE LYS HIS LYS GLU PRO VAL ALA LYS SEQRES 12 A 489 PRO PHE THR ASP PRO GLU PHE PRO VAL ASN ASN ASP SER SEQRES 13 A 489 PHE LEU ASP VAL GLY THR CYS GLU ASP ALA VAL ALA TYR SEQRES 14 A 489 LEU SER ASN PRO PRO LYS GLU PRO PHE ILE CYS ILE ALA SEQRES 15 A 489 ASP PHE GLN ASN PRO HIS ASN ILE CYS GLY PHE ILE GLY SEQRES 16 A 489 GLU ASN ALA GLY VAL HIS THR ASP ARG PRO ILE SER GLY SEQRES 17 A 489 PRO LEU PRO GLU LEU PRO ASP ASN PHE ASP VAL GLU ASP SEQRES 18 A 489 TRP SER ASN ILE PRO THR PRO VAL GLN TYR ILE CYS CYS SEQRES 19 A 489 SER HIS ARG ARG MET THR GLN ALA ALA HIS TRP ASN GLU SEQRES 20 A 489 GLU ASN TYR ARG HIS TYR ILE ALA ALA PHE GLN HIS TYR SEQRES 21 A 489 THR LYS MET VAL SER LYS GLN VAL ASP SER VAL LEU LYS SEQRES 22 A 489 ALA LEU TYR SER THR PRO ALA GLY ARG ASN THR ILE VAL SEQRES 23 A 489 VAL ILE MET ALA ASP HIS GLY ASP GLY MET ALA SER HIS SEQRES 24 A 489 ARG MET VAL THR LYS HIS ILE SER PHE TYR ASP GLU MET SEQRES 25 A 489 THR ASN VAL PRO PHE ILE PHE ALA GLY PRO GLY ILE LYS SEQRES 26 A 489 GLN GLN LYS LYS PRO VAL ASP HIS LEU LEU THR GLN PRO SEQRES 27 A 489 THR LEU ASP LEU LEU PRO THR LEU CYS ASP LEU ALA GLY SEQRES 28 A 489 ILE ALA VAL PRO ALA GLU LYS ALA GLY ILE SER LEU ALA SEQRES 29 A 489 PRO THR LEU ARG GLY GLU LYS GLN LYS LYS SER HIS PRO SEQRES 30 A 489 TYR VAL VAL SER GLU TRP HIS SER GLU TYR GLU TYR VAL SEQRES 31 A 489 THR THR PRO GLY ARG MET VAL ARG GLY PRO ARG TYR LYS SEQRES 32 A 489 TYR THR HIS TYR LEU GLU GLY ASN GLY GLU GLU LEU TYR SEQRES 33 A 489 ASP MET LYS LYS ASP PRO GLY GLU ARG LYS ASN LEU ALA SEQRES 34 A 489 LYS ASP PRO LYS TYR SER LYS ILE LEU ALA GLU HIS ARG SEQRES 35 A 489 ALA LEU LEU ASP ASP TYR ILE THR ARG SER LYS ASP ASP SEQRES 36 A 489 TYR ARG SER LEU LYS VAL ASP ALA ASP PRO ARG CYS ARG SEQRES 37 A 489 ASN HIS THR PRO GLY TYR PRO SER HIS GLU GLY PRO GLY SEQRES 38 A 489 ALA ARG GLU ILE LEU LYS ARG LYS HET ZN A1487 1 HET CIT A1488 13 HETNAM ZN ZINC ION HETNAM CIT CITRIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 CIT C6 H8 O7 FORMUL 4 HOH *382(H2 O) HELIX 1 1 VAL A 39 GLY A 43 5 5 HELIX 2 2 THR A 49 ARG A 58 1 10 HELIX 3 3 LEU A 71 GLY A 82 1 12 HELIX 4 4 MET A 84 ASN A 89 1 6 HELIX 5 5 THR A 108 SER A 116 1 9 HELIX 6 6 ASN A 153 ASN A 172 1 20 HELIX 7 7 ASN A 189 ASN A 197 1 9 HELIX 8 8 ASP A 221 ILE A 225 5 5 HELIX 9 9 PRO A 226 TYR A 231 1 6 HELIX 10 10 TYR A 231 HIS A 236 1 6 HELIX 11 11 HIS A 236 ALA A 243 1 8 HELIX 12 12 ASN A 246 TYR A 276 1 31 HELIX 13 13 ALA A 280 ARG A 282 5 3 HELIX 14 14 ALA A 297 MET A 301 5 5 HELIX 15 15 TYR A 309 ASN A 314 1 6 HELIX 16 16 GLN A 337 GLY A 351 1 15 HELIX 17 17 LEU A 363 GLY A 369 1 7 HELIX 18 18 GLU A 409 ASN A 411 5 3 HELIX 19 19 ASP A 431 LYS A 433 5 3 HELIX 20 20 TYR A 434 SER A 452 1 19 HELIX 21 21 ASP A 455 LEU A 459 5 5 HELIX 22 22 ASP A 464 ARG A 468 5 5 HELIX 23 23 GLY A 473 HIS A 477 5 5 HELIX 24 24 GLY A 481 LEU A 486 1 6 SHEET 1 AA 7 VAL A 60 ILE A 61 0 SHEET 2 AA 7 PHE A 317 ALA A 320 -1 O PHE A 319 N VAL A 60 SHEET 3 AA 7 THR A 284 MET A 289 -1 O VAL A 286 N ALA A 320 SHEET 4 AA 7 ASN A 25 CYS A 31 1 O ASN A 25 N ILE A 285 SHEET 5 AA 7 PHE A 178 PHE A 184 1 O PHE A 178 N PHE A 26 SHEET 6 AA 7 GLU A 119 GLY A 124 1 O GLU A 119 N ILE A 179 SHEET 7 AA 7 LYS A 136 LYS A 138 1 O LYS A 136 N HIS A 122 SHEET 1 AB 4 VAL A 379 SER A 385 0 SHEET 2 AB 4 THR A 391 ARG A 398 -1 N THR A 392 O HIS A 384 SHEET 3 AB 4 TYR A 402 TYR A 407 -1 O TYR A 404 N VAL A 397 SHEET 4 AB 4 GLY A 412 ASP A 417 -1 O GLY A 412 N TYR A 407 LINK SG CYS A 233 ZN ZN A1487 1555 1555 2.24 LINK SG CYS A 234 ZN ZN A1487 1555 1555 2.28 LINK NE2 HIS A 470 ZN ZN A1487 1555 1555 2.13 LINK ND1 HIS A 477 ZN ZN A1487 1555 1555 2.11 CISPEP 1 GLU A 96 PRO A 97 0 3.49 CISPEP 2 GLU A 176 PRO A 177 0 -1.57 CISPEP 3 ASN A 186 PRO A 187 0 10.15 SITE 1 AC1 4 CYS A 233 CYS A 234 HIS A 470 HIS A 477 SITE 1 AC2 14 ASN A 93 HIS A 188 CYS A 191 ARG A 237 SITE 2 AC2 14 ARG A 238 LYS A 304 TYR A 387 HOH A2058 SITE 3 AC2 14 HOH A2120 HOH A2226 HOH A2227 HOH A2265 SITE 4 AC2 14 HOH A2323 HOH A2382 CRYST1 68.872 68.872 110.004 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009091 0.00000