HEADER HYDROLASE 14-APR-16 5G2V TITLE STRUCTURE OF BT4656 IN COMPLEX WITH ITS SUBSTRATE D-GLUCOSAMINE-2-N, TITLE 2 6-O-DISULFATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUCOSAMINE-6-SULFATASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA/BETA HYDROLASE FOLD, RESIDUES 45-558; COMPND 5 EC: 3.1.6.14; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: D-GLUCOSAMINE-2-N, 6-O-DISULFATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE, GLYCOSAMINOGLYCAN SULFATASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CARTMELL,E.C.LOWE,A.BASLE,L.I.CROUCH,M.CZJZEK,J.TURNBULL, AUTHOR 2 B.HENRISSAT,N.TERRAPON,S.THOMAS,H.MURRAY,S.J.FIRBANK,D.N.BOLAM REVDAT 4 08-MAY-24 5G2V 1 HETSYN REVDAT 3 29-JUL-20 5G2V 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 12-DEC-18 5G2V 1 JRNL REVDAT 1 24-MAY-17 5G2V 0 JRNL AUTH A.CARTMELL,E.C.LOWE,A.BASLE,S.J.FIRBANK,D.A.NDEH,H.MURRAY, JRNL AUTH 2 N.TERRAPON,V.LOMBARD,B.HENRISSAT,J.E.TURNBULL,M.CZJZEK, JRNL AUTH 3 H.J.GILBERT,D.N.BOLAM JRNL TITL HOW MEMBERS OF THE HUMAN GUT MICROBIOTA OVERCOME THE JRNL TITL 2 SULFATION PROBLEM POSED BY GLYCOSAMINOGLYCANS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 7037 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28630303 JRNL DOI 10.1073/PNAS.1704367114 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 96598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.109 REMARK 3 R VALUE (WORKING SET) : 0.108 REMARK 3 FREE R VALUE : 0.130 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4989 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6768 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.1150 REMARK 3 BIN FREE R VALUE SET COUNT : 355 REMARK 3 BIN FREE R VALUE : 0.1330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 524 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.183 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4281 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3861 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5822 ; 1.527 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8895 ; 0.997 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 6.474 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;33.771 ;24.469 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;11.331 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;20.577 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4969 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1052 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2043 ; 0.831 ; 0.972 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2042 ; 0.820 ; 0.971 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2570 ; 1.050 ; 1.463 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2238 ; 1.038 ; 1.097 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8141 ; 1.666 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 130 ;22.403 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8411 ; 4.780 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U REMARK 3 VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5G2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-16. REMARK 100 THE DEPOSITION ID IS D_1290066627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101665 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3350 0.2 M SODIUM NITRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.60900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.50250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.50250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.60900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 PRO A 14 REMARK 465 GLN A 15 REMARK 465 GLN A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 ARG A 19 REMARK 465 GLN A 20 REMARK 465 PRO A 21 REMARK 465 GLN A 22 REMARK 465 LYS A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 THR A 26 REMARK 465 THR A 521 REMARK 465 VAL A 522 REMARK 465 LEU A 523 REMARK 465 PHE A 524 REMARK 465 LYS A 525 REMARK 465 GLY A 526 REMARK 465 ASP A 527 REMARK 465 ARG A 528 REMARK 465 ARG A 529 REMARK 465 LEU A 530 REMARK 465 MET A 531 REMARK 465 GLU A 532 REMARK 465 ASN A 533 REMARK 465 ARG A 534 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 ASN A 50 CG OD1 ND2 REMARK 470 GLN A 115 CG CD OE1 NE2 REMARK 470 ASN A 214 CG OD1 ND2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 GLU A 408 CG CD OE1 OE2 REMARK 470 LYS A 427 CG CD CE NZ REMARK 470 LYS A 478 CD CE NZ REMARK 470 LYS A 495 CG CD CE NZ REMARK 470 LYS A 498 CD CE NZ REMARK 470 ASN A 514 CG OD1 ND2 REMARK 470 LYS A 519 CD CE NZ REMARK 470 GLU A 520 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2041 O HOH A 2304 3555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 328 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 69 51.10 -142.30 REMARK 500 ASN A 74 106.00 -168.60 REMARK 500 TRP A 126 -62.53 -96.77 REMARK 500 ILE A 129 -51.81 81.06 REMARK 500 MET A 239 41.49 -145.58 REMARK 500 ASP A 248 -71.41 -89.23 REMARK 500 LEU A 354 56.61 -108.71 REMARK 500 ASP A 361 -157.64 85.80 REMARK 500 LYS A 362 -128.94 -146.49 REMARK 500 ARG A 363 -53.69 76.92 REMARK 500 TYR A 378 89.95 -166.21 REMARK 500 ALA A 445 -177.83 -174.31 REMARK 500 HIS A 447 -7.73 74.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1521 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 37 OD1 REMARK 620 2 ASP A 38 OD1 92.7 REMARK 620 3 ASP A 349 OD2 92.1 147.1 REMARK 620 4 ASP A 349 OD1 102.5 96.8 50.5 REMARK 620 5 GLN A 350 OE1 176.6 86.0 87.3 74.5 REMARK 620 6 SGN A1522 O5S 85.6 94.1 118.7 166.1 97.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G2T RELATED DB: PDB REMARK 900 STRUCTURE OF BT4656 IN COMPLEX WITH ITS SUBSTRATE D- GLUCOSAMINE-2- REMARK 900 N, 6-O-DISULFATE. REMARK 900 RELATED ID: 5G2U RELATED DB: PDB REMARK 900 STRUCTURE OF BT1596,A 2-O GAG SULFATASE DBREF 5G2V A 21 534 UNP Q89YS5 Q89YS5_BACTN 45 558 SEQADV 5G2V MET A 1 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V GLY A 2 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V SER A 3 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V SER A 4 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V HIS A 5 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V HIS A 6 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V HIS A 7 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V HIS A 8 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V HIS A 9 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V HIS A 10 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V SER A 11 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V SER A 12 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V GLY A 13 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V PRO A 14 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V GLN A 15 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V GLN A 16 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V GLY A 17 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V LEU A 18 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V ARG A 19 UNP Q89YS5 EXPRESSION TAG SEQADV 5G2V GLN A 20 UNP Q89YS5 EXPRESSION TAG SEQRES 1 A 534 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 534 PRO GLN GLN GLY LEU ARG GLN PRO GLN LYS GLU GLU THR SEQRES 3 A 534 LYS ARG PRO ASN ILE ILE PHE MET MET THR ASP ASP HIS SEQRES 4 A 534 THR THR GLN ALA MET SER CYS TYR GLY GLY ASN LEU ILE SEQRES 5 A 534 GLN THR PRO ASN MET ASP ARG ILE ALA ASN GLU GLY ILE SEQRES 6 A 534 ARG PHE ASP ASN CYS TYR ALA VAL ASN ALA LEU SER GLY SEQRES 7 A 534 PRO SER ARG ALA CYS ILE LEU THR GLY LYS PHE SER HIS SEQRES 8 A 534 GLU ASN GLY PHE THR ASP ASN ALA SER THR PHE ASN GLY SEQRES 9 A 534 ASP GLN GLN THR PHE PRO LYS LEU LEU GLN GLN ALA GLY SEQRES 10 A 534 TYR GLN THR ALA MET ILE GLY LYS TRP HIS LEU ILE SER SEQRES 11 A 534 GLU PRO GLN GLY PHE ASP HIS TRP SER ILE LEU SER GLY SEQRES 12 A 534 GLN HIS GLU GLN GLY ASP TYR TYR ASP PRO ASP PHE TRP SEQRES 13 A 534 GLU ASP GLY LYS HIS ILE VAL GLU LYS GLY TYR ALA THR SEQRES 14 A 534 ASP ILE ILE THR ASP LYS ALA ILE ASN PHE LEU GLU ASN SEQRES 15 A 534 ARG ASP LYS ASN LYS PRO PHE CYS MET MET TYR HIS GLN SEQRES 16 A 534 LYS ALA PRO HIS ARG ASN TRP MET PRO ALA PRO ARG HIS SEQRES 17 A 534 LEU GLY ILE PHE ASN ASN THR ILE PHE PRO GLU PRO ALA SEQRES 18 A 534 ASN LEU PHE ASP ASP TYR GLU GLY ARG GLY LYS ALA ALA SEQRES 19 A 534 ARG GLU GLN ASP MET SER ILE GLU HIS THR LEU THR ASN SEQRES 20 A 534 ASP TRP ASP LEU LYS LEU LEU THR ARG GLU GLU MET LEU SEQRES 21 A 534 LYS ASP THR THR ASN ARG LEU TYR SER VAL TYR LYS ARG SEQRES 22 A 534 MET PRO SER GLU VAL GLN ASP LYS TRP ASP SER ALA TYR SEQRES 23 A 534 ALA GLN ARG ILE ALA GLU TYR ARG LYS GLY ASP LEU LYS SEQRES 24 A 534 GLY LYS ALA LEU ILE SER TRP LYS TYR GLN GLN TYR MET SEQRES 25 A 534 ARG ASP TYR LEU ALA THR VAL LEU ALA VAL ASP GLU ASN SEQRES 26 A 534 ILE GLY ARG LEU LEU ASN TYR LEU GLU LYS ILE GLY GLU SEQRES 27 A 534 LEU ASP ASN THR ILE ILE VAL TYR THR SER ASP GLN GLY SEQRES 28 A 534 PHE PHE LEU GLY GLU HIS GLY TRP PHE ASP LYS ARG PHE SEQRES 29 A 534 MET TYR GLU GLU CYS GLN ARG MET PRO LEU ILE ILE ARG SEQRES 30 A 534 TYR PRO LYS ALA ILE LYS ALA GLY SER THR SER SER ALA SEQRES 31 A 534 ILE SER MET ASN VAL ASP PHE ALA PRO THR PHE LEU ASP SEQRES 32 A 534 PHE ALA GLY VAL GLU VAL PRO SER ASP ILE GLN GLY ALA SEQRES 33 A 534 SER LEU LYS PRO VAL LEU GLU ASN GLU GLY LYS THR PRO SEQRES 34 A 534 ALA ASP TRP ARG LYS ALA ALA TYR TYR HIS TYR TYR GLU SEQRES 35 A 534 TYR PRO ALA GLU HIS SER VAL LYS ARG HIS TYR GLY ILE SEQRES 36 A 534 ARG THR GLN ASP PHE LYS LEU ILE HIS PHE TYR ASN ASP SEQRES 37 A 534 ILE ASP GLU TRP GLU MET TYR ASP MET LYS ALA ASP PRO SEQRES 38 A 534 ARG GLU MET ASN ASN ILE PHE GLY LYS ALA GLU TYR ALA SEQRES 39 A 534 LYS LYS GLN LYS GLU LEU MET GLN LEU LEU GLU GLU THR SEQRES 40 A 534 GLN LYS GLN TYR LYS ASP ASN ASP PRO ASP GLU LYS GLU SEQRES 41 A 534 THR VAL LEU PHE LYS GLY ASP ARG ARG LEU MET GLU ASN SEQRES 42 A 534 ARG HET CA A1521 1 HET SGN A1522 20 HET NO3 A1523 4 HETNAM CA CALCIUM ION HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM NO3 NITRATE ION HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE FORMUL 2 CA CA 2+ FORMUL 3 SGN C6 H13 N O11 S2 FORMUL 4 NO3 N O3 1- FORMUL 5 HOH *524(H2 O) HELIX 1 1 THR A 40 MET A 44 5 5 HELIX 2 2 MET A 44 GLY A 48 5 5 HELIX 3 3 THR A 54 GLU A 63 1 10 HELIX 4 4 LEU A 76 GLY A 87 1 12 HELIX 5 5 PHE A 89 GLY A 94 1 6 HELIX 6 6 THR A 108 ALA A 116 1 9 HELIX 7 7 GLY A 143 GLN A 147 5 5 HELIX 8 8 TYR A 167 ASN A 182 1 16 HELIX 9 9 ALA A 205 LEU A 209 5 5 HELIX 10 10 GLY A 231 GLN A 237 1 7 HELIX 11 11 THR A 255 LYS A 261 1 7 HELIX 12 12 ASN A 265 LYS A 272 1 8 HELIX 13 13 PRO A 275 LYS A 295 1 21 HELIX 14 14 LYS A 299 ILE A 336 1 38 HELIX 15 15 GLY A 355 GLY A 358 5 4 HELIX 16 16 TYR A 366 ARG A 371 1 6 HELIX 17 17 ASP A 396 ALA A 405 1 10 HELIX 18 18 LEU A 418 GLU A 423 1 6 HELIX 19 19 LYS A 490 GLU A 492 5 3 HELIX 20 20 TYR A 493 TYR A 511 1 19 SHEET 1 AA10 LYS A 160 VAL A 163 0 SHEET 2 AA10 ASP A 154 GLU A 157 -1 O PHE A 155 N ILE A 162 SHEET 3 AA10 HIS A 137 LEU A 141 -1 O ILE A 140 N TRP A 156 SHEET 4 AA10 GLN A 119 GLY A 124 1 O THR A 120 N HIS A 137 SHEET 5 AA10 PHE A 189 HIS A 194 1 O CYS A 190 N ALA A 121 SHEET 6 AA10 ASN A 30 THR A 36 1 O ILE A 31 N MET A 191 SHEET 7 AA10 THR A 342 SER A 348 1 O ILE A 343 N ILE A 32 SHEET 8 AA10 LEU A 374 ARG A 377 -1 O ILE A 375 N TYR A 346 SHEET 9 AA10 ILE A 65 PHE A 67 -1 O ILE A 65 N ILE A 376 SHEET 10 AA10 SER A 386 SER A 388 1 O SER A 386 N ARG A 66 SHEET 1 AB 2 CYS A 70 TYR A 71 0 SHEET 2 AB 2 SER A 392 MET A 393 1 O SER A 392 N TYR A 71 SHEET 1 AC 4 ALA A 436 TYR A 440 0 SHEET 2 AC 4 ARG A 451 ARG A 456 -1 O HIS A 452 N TYR A 440 SHEET 3 AC 4 PHE A 460 ASN A 467 -1 O LEU A 462 N ILE A 455 SHEET 4 AC 4 GLU A 471 ASP A 476 -1 O GLU A 471 N PHE A 465 LINK OD1 ASP A 37 CA CA A1521 1555 1555 2.31 LINK OD1 ASP A 38 CA CA A1521 1555 1555 2.33 LINK OD2 ASP A 349 CA CA A1521 1555 1555 2.40 LINK OD1 ASP A 349 CA CA A1521 1555 1555 2.69 LINK OE1 GLN A 350 CA CA A1521 1555 1555 2.45 LINK CA CA A1521 O5S SGN A1522 1555 1555 2.41 CISPEP 1 ALA A 197 PRO A 198 0 -6.76 CISPEP 2 ARG A 200 ASN A 201 0 13.15 CISPEP 3 TYR A 443 PRO A 444 0 -8.98 CISPEP 4 ASN A 467 ASP A 468 0 12.04 CISPEP 5 ASN A 467 ASP A 468 0 14.73 CRYST1 71.218 74.550 95.005 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010526 0.00000