data_5G3Z # _entry.id 5G3Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5G3Z pdb_00005g3z 10.2210/pdb5g3z/pdb PDBE EBI-66711 ? ? WWPDB D_1290066711 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-28 2 'Structure model' 1 1 2017-03-01 3 'Structure model' 1 2 2019-05-08 4 'Structure model' 1 3 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Experimental preparation' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_PDB_rev 2 3 'Structure model' database_PDB_rev_record 3 3 'Structure model' exptl_crystal_grow 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_initial_refinement_model 9 4 'Structure model' pdbx_struct_conn_angle 10 4 'Structure model' struct_conn 11 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.method' 2 3 'Structure model' '_exptl_crystal_grow.temp' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_database_status.status_code_sf' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.value' 11 4 'Structure model' '_struct_conn.pdbx_dist_value' 12 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5G3Z _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2016-05-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5G3Y unspecified 'CRYSTAL STRUCTURE OF ADENYLATE KINASE ANCESTOR 1 WITH ZN AND ADP BOUND' PDB 5G40 unspecified 'CRYSTAL STRUCTURE OF ADENYLATE KINASE ANCESTOR 4 WITH ZN AND AMP-ADP BOUND' PDB 5G41 unspecified 'CRYSTAL STRUCTURE OF ADENYLATE KINASE ANCESTOR 4 WITH ZN, MG AND AP5A BOUND' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nguyen, V.' 1 'Kutter, S.' 2 'English, J.' 3 'Kern, D.' 4 # _citation.id primary _citation.title 'Evolutionary drivers of thermoadaptation in enzyme catalysis.' _citation.journal_abbrev Science _citation.journal_volume 355 _citation.page_first 289 _citation.page_last 294 _citation.year 2017 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 1095-9203 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 28008087 _citation.pdbx_database_id_DOI 10.1126/science.aah3717 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nguyen, V.' 1 ? primary 'Wilson, C.' 2 ? primary 'Hoemberger, M.' 3 ? primary 'Stiller, J.B.' 4 ? primary 'Agafonov, R.V.' 5 ? primary 'Kutter, S.' 6 ? primary 'English, J.' 7 ? primary 'Theobald, D.L.' 8 ? primary 'Kern, D.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ADENYLATE KINSE' 24169.842 1 2.7.4.3 ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn "BIS(ADENOSINE)-5'-PENTAPHOSPHATE" 916.367 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 118 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNLVLMGLPGAGKGTQAEKIVEKYGIPHISTGDMFRAAIKEGTELGLKAKSFMDKGELVPDEVTIGIVRERLSKDDCKKG FLLDGFPRTVAQAEALDNILKELGKKLDYVINIEVPKEELMERLTGRRICKTCGATYHLIFNPPKVEGVCDKCGGELYQR ADDNEETVANRLDVNMKQTQPLLDFYEEKGYLRNIDGQQDINKVFADIDALLGGLKQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MNLVLMGLPGAGKGTQAEKIVEKYGIPHISTGDMFRAAIKEGTELGLKAKSFMDKGELVPDEVTIGIVRERLSKDDCKKG FLLDGFPRTVAQAEALDNILKELGKKLDYVINIEVPKEELMERLTGRRICKTCGATYHLIFNPPKVEGVCDKCGGELYQR ADDNEETVANRLDVNMKQTQPLLDFYEEKGYLRNIDGQQDINKVFADIDALLGGLKQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 "BIS(ADENOSINE)-5'-PENTAPHOSPHATE" AP5 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 LEU n 1 4 VAL n 1 5 LEU n 1 6 MET n 1 7 GLY n 1 8 LEU n 1 9 PRO n 1 10 GLY n 1 11 ALA n 1 12 GLY n 1 13 LYS n 1 14 GLY n 1 15 THR n 1 16 GLN n 1 17 ALA n 1 18 GLU n 1 19 LYS n 1 20 ILE n 1 21 VAL n 1 22 GLU n 1 23 LYS n 1 24 TYR n 1 25 GLY n 1 26 ILE n 1 27 PRO n 1 28 HIS n 1 29 ILE n 1 30 SER n 1 31 THR n 1 32 GLY n 1 33 ASP n 1 34 MET n 1 35 PHE n 1 36 ARG n 1 37 ALA n 1 38 ALA n 1 39 ILE n 1 40 LYS n 1 41 GLU n 1 42 GLY n 1 43 THR n 1 44 GLU n 1 45 LEU n 1 46 GLY n 1 47 LEU n 1 48 LYS n 1 49 ALA n 1 50 LYS n 1 51 SER n 1 52 PHE n 1 53 MET n 1 54 ASP n 1 55 LYS n 1 56 GLY n 1 57 GLU n 1 58 LEU n 1 59 VAL n 1 60 PRO n 1 61 ASP n 1 62 GLU n 1 63 VAL n 1 64 THR n 1 65 ILE n 1 66 GLY n 1 67 ILE n 1 68 VAL n 1 69 ARG n 1 70 GLU n 1 71 ARG n 1 72 LEU n 1 73 SER n 1 74 LYS n 1 75 ASP n 1 76 ASP n 1 77 CYS n 1 78 LYS n 1 79 LYS n 1 80 GLY n 1 81 PHE n 1 82 LEU n 1 83 LEU n 1 84 ASP n 1 85 GLY n 1 86 PHE n 1 87 PRO n 1 88 ARG n 1 89 THR n 1 90 VAL n 1 91 ALA n 1 92 GLN n 1 93 ALA n 1 94 GLU n 1 95 ALA n 1 96 LEU n 1 97 ASP n 1 98 ASN n 1 99 ILE n 1 100 LEU n 1 101 LYS n 1 102 GLU n 1 103 LEU n 1 104 GLY n 1 105 LYS n 1 106 LYS n 1 107 LEU n 1 108 ASP n 1 109 TYR n 1 110 VAL n 1 111 ILE n 1 112 ASN n 1 113 ILE n 1 114 GLU n 1 115 VAL n 1 116 PRO n 1 117 LYS n 1 118 GLU n 1 119 GLU n 1 120 LEU n 1 121 MET n 1 122 GLU n 1 123 ARG n 1 124 LEU n 1 125 THR n 1 126 GLY n 1 127 ARG n 1 128 ARG n 1 129 ILE n 1 130 CYS n 1 131 LYS n 1 132 THR n 1 133 CYS n 1 134 GLY n 1 135 ALA n 1 136 THR n 1 137 TYR n 1 138 HIS n 1 139 LEU n 1 140 ILE n 1 141 PHE n 1 142 ASN n 1 143 PRO n 1 144 PRO n 1 145 LYS n 1 146 VAL n 1 147 GLU n 1 148 GLY n 1 149 VAL n 1 150 CYS n 1 151 ASP n 1 152 LYS n 1 153 CYS n 1 154 GLY n 1 155 GLY n 1 156 GLU n 1 157 LEU n 1 158 TYR n 1 159 GLN n 1 160 ARG n 1 161 ALA n 1 162 ASP n 1 163 ASP n 1 164 ASN n 1 165 GLU n 1 166 GLU n 1 167 THR n 1 168 VAL n 1 169 ALA n 1 170 ASN n 1 171 ARG n 1 172 LEU n 1 173 ASP n 1 174 VAL n 1 175 ASN n 1 176 MET n 1 177 LYS n 1 178 GLN n 1 179 THR n 1 180 GLN n 1 181 PRO n 1 182 LEU n 1 183 LEU n 1 184 ASP n 1 185 PHE n 1 186 TYR n 1 187 GLU n 1 188 GLU n 1 189 LYS n 1 190 GLY n 1 191 TYR n 1 192 LEU n 1 193 ARG n 1 194 ASN n 1 195 ILE n 1 196 ASP n 1 197 GLY n 1 198 GLN n 1 199 GLN n 1 200 ASP n 1 201 ILE n 1 202 ASN n 1 203 LYS n 1 204 VAL n 1 205 PHE n 1 206 ALA n 1 207 ASP n 1 208 ILE n 1 209 ASP n 1 210 ALA n 1 211 LEU n 1 212 LEU n 1 213 GLY n 1 214 GLY n 1 215 LEU n 1 216 LYS n 1 217 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SYNTHETIC CONSTRUCT' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET17B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AP5 non-polymer . "BIS(ADENOSINE)-5'-PENTAPHOSPHATE" ? 'C20 H29 N10 O22 P5' 916.367 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 MET 6 6 6 MET MET A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 CYS 77 77 77 CYS CYS A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 MET 121 121 121 MET MET A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 CYS 130 130 130 CYS CYS A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 CYS 133 133 133 CYS CYS A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 PHE 141 141 141 PHE PHE A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 PRO 143 143 143 PRO PRO A . n A 1 144 PRO 144 144 144 PRO PRO A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 CYS 150 150 150 CYS CYS A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 CYS 153 153 153 CYS CYS A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 GLN 159 159 159 GLN GLN A . n A 1 160 ARG 160 160 160 ARG ARG A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 ASN 170 170 170 ASN ASN A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 ASP 173 173 173 ASP ASP A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 ASN 175 175 175 ASN ASN A . n A 1 176 MET 176 176 176 MET MET A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 GLN 178 178 178 GLN GLN A . n A 1 179 THR 179 179 179 THR THR A . n A 1 180 GLN 180 180 180 GLN GLN A . n A 1 181 PRO 181 181 181 PRO PRO A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 ASP 184 184 184 ASP ASP A . n A 1 185 PHE 185 185 185 PHE PHE A . n A 1 186 TYR 186 186 186 TYR TYR A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 LYS 189 189 189 LYS LYS A . n A 1 190 GLY 190 190 190 GLY GLY A . n A 1 191 TYR 191 191 191 TYR TYR A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 ARG 193 193 193 ARG ARG A . n A 1 194 ASN 194 194 194 ASN ASN A . n A 1 195 ILE 195 195 195 ILE ILE A . n A 1 196 ASP 196 196 196 ASP ASP A . n A 1 197 GLY 197 197 197 GLY GLY A . n A 1 198 GLN 198 198 198 GLN GLN A . n A 1 199 GLN 199 199 199 GLN GLN A . n A 1 200 ASP 200 200 200 ASP ASP A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 ASN 202 202 202 ASN ASN A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 PHE 205 205 205 PHE PHE A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 ASP 207 207 207 ASP ASP A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 ASP 209 209 209 ASP ASP A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 LYS 216 216 ? ? ? A . n A 1 217 GLN 217 217 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1216 1216 ZN ZN A . C 3 AP5 1 1217 1217 AP5 AP5 A . D 4 MG 1 1218 1218 MG MG A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . E 5 HOH 23 2023 2023 HOH HOH A . E 5 HOH 24 2024 2024 HOH HOH A . E 5 HOH 25 2025 2025 HOH HOH A . E 5 HOH 26 2026 2026 HOH HOH A . E 5 HOH 27 2027 2027 HOH HOH A . E 5 HOH 28 2028 2028 HOH HOH A . E 5 HOH 29 2029 2029 HOH HOH A . E 5 HOH 30 2030 2030 HOH HOH A . E 5 HOH 31 2031 2031 HOH HOH A . E 5 HOH 32 2032 2032 HOH HOH A . E 5 HOH 33 2033 2033 HOH HOH A . E 5 HOH 34 2034 2034 HOH HOH A . E 5 HOH 35 2035 2035 HOH HOH A . E 5 HOH 36 2036 2036 HOH HOH A . E 5 HOH 37 2037 2037 HOH HOH A . E 5 HOH 38 2038 2038 HOH HOH A . E 5 HOH 39 2039 2039 HOH HOH A . E 5 HOH 40 2040 2040 HOH HOH A . E 5 HOH 41 2041 2041 HOH HOH A . E 5 HOH 42 2042 2042 HOH HOH A . E 5 HOH 43 2043 2043 HOH HOH A . E 5 HOH 44 2044 2044 HOH HOH A . E 5 HOH 45 2045 2045 HOH HOH A . E 5 HOH 46 2046 2046 HOH HOH A . E 5 HOH 47 2047 2047 HOH HOH A . E 5 HOH 48 2048 2048 HOH HOH A . E 5 HOH 49 2049 2049 HOH HOH A . E 5 HOH 50 2050 2050 HOH HOH A . E 5 HOH 51 2051 2051 HOH HOH A . E 5 HOH 52 2052 2052 HOH HOH A . E 5 HOH 53 2053 2053 HOH HOH A . E 5 HOH 54 2054 2054 HOH HOH A . E 5 HOH 55 2055 2055 HOH HOH A . E 5 HOH 56 2056 2056 HOH HOH A . E 5 HOH 57 2057 2057 HOH HOH A . E 5 HOH 58 2058 2058 HOH HOH A . E 5 HOH 59 2059 2059 HOH HOH A . E 5 HOH 60 2060 2060 HOH HOH A . E 5 HOH 61 2061 2061 HOH HOH A . E 5 HOH 62 2062 2062 HOH HOH A . E 5 HOH 63 2063 2063 HOH HOH A . E 5 HOH 64 2064 2064 HOH HOH A . E 5 HOH 65 2065 2065 HOH HOH A . E 5 HOH 66 2066 2066 HOH HOH A . E 5 HOH 67 2067 2067 HOH HOH A . E 5 HOH 68 2068 2068 HOH HOH A . E 5 HOH 69 2069 2069 HOH HOH A . E 5 HOH 70 2070 2070 HOH HOH A . E 5 HOH 71 2071 2071 HOH HOH A . E 5 HOH 72 2072 2072 HOH HOH A . E 5 HOH 73 2073 2073 HOH HOH A . E 5 HOH 74 2074 2074 HOH HOH A . E 5 HOH 75 2075 2075 HOH HOH A . E 5 HOH 76 2076 2076 HOH HOH A . E 5 HOH 77 2077 2077 HOH HOH A . E 5 HOH 78 2078 2078 HOH HOH A . E 5 HOH 79 2079 2079 HOH HOH A . E 5 HOH 80 2080 2080 HOH HOH A . E 5 HOH 81 2081 2081 HOH HOH A . E 5 HOH 82 2082 2082 HOH HOH A . E 5 HOH 83 2083 2083 HOH HOH A . E 5 HOH 84 2084 2084 HOH HOH A . E 5 HOH 85 2085 2085 HOH HOH A . E 5 HOH 86 2086 2086 HOH HOH A . E 5 HOH 87 2087 2087 HOH HOH A . E 5 HOH 88 2088 2088 HOH HOH A . E 5 HOH 89 2089 2089 HOH HOH A . E 5 HOH 90 2090 2090 HOH HOH A . E 5 HOH 91 2091 2091 HOH HOH A . E 5 HOH 92 2092 2092 HOH HOH A . E 5 HOH 93 2093 2093 HOH HOH A . E 5 HOH 94 2094 2094 HOH HOH A . E 5 HOH 95 2095 2095 HOH HOH A . E 5 HOH 96 2096 2096 HOH HOH A . E 5 HOH 97 2097 2097 HOH HOH A . E 5 HOH 98 2098 2098 HOH HOH A . E 5 HOH 99 2099 2099 HOH HOH A . E 5 HOH 100 2100 2100 HOH HOH A . E 5 HOH 101 2101 2101 HOH HOH A . E 5 HOH 102 2102 2102 HOH HOH A . E 5 HOH 103 2103 2103 HOH HOH A . E 5 HOH 104 2104 2104 HOH HOH A . E 5 HOH 105 2105 2105 HOH HOH A . E 5 HOH 106 2106 2106 HOH HOH A . E 5 HOH 107 2107 2107 HOH HOH A . E 5 HOH 108 2108 2108 HOH HOH A . E 5 HOH 109 2109 2109 HOH HOH A . E 5 HOH 110 2110 2110 HOH HOH A . E 5 HOH 111 2111 2111 HOH HOH A . E 5 HOH 112 2112 2112 HOH HOH A . E 5 HOH 113 2113 2113 HOH HOH A . E 5 HOH 114 2114 2114 HOH HOH A . E 5 HOH 115 2115 2115 HOH HOH A . E 5 HOH 116 2116 2116 HOH HOH A . E 5 HOH 117 2117 2117 HOH HOH A . E 5 HOH 118 2118 2118 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.8.0135 ? 1 xia2 'data reduction' MOSFLM ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 5G3Z _cell.length_a 66.617 _cell.length_b 77.435 _cell.length_c 38.628 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G3Z _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # _exptl.entry_id 5G3Z _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.99 _exptl_crystal.density_percent_sol 38.31 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.5 UL OF PROTEIN MIXTURE (20 MG/ML ADK ANCESTOR 3 AND 10 MM MGAP5A IN 40 MM MOPS PH 7.0, 50 MM NACL, 2 MM TCEP) WAS MIXED WITH 0.5 UL OF MOTHER LIQUOR (1.6 M SODIUM CITRATE TRIBASIC DEHYDRATE PH 6.5). CRYSTALS WERE GROWN BY SITTING DROP METHOD AT 18C. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2014-11-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL, SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00002 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength 1.00002 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5G3Z _reflns.observed_criterion_sigma_I 2.1 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 77.43 _reflns.d_resolution_high 1.89 _reflns.number_obs 16553 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.18 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.60 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.89 _reflns_shell.d_res_low 1.94 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 1.30 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 6.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5G3Z _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15482 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.50 _refine.ls_d_res_high 1.89 _refine.ls_percent_reflns_obs 99.96 _refine.ls_R_factor_obs 0.17862 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17516 _refine.ls_R_factor_R_free 0.23250 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.2 _refine.ls_number_reflns_R_free 1029 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 20.952 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 1P3J' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.162 _refine.pdbx_overall_ESU_R_Free 0.155 _refine.overall_SU_ML 0.113 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.930 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1671 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 118 _refine_hist.number_atoms_total 1848 _refine_hist.d_res_high 1.89 _refine_hist.d_res_low 50.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.019 ? 1755 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1699 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.057 2.038 ? 2371 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.076 3.000 ? 3931 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.065 5.000 ? 214 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 42.479 25.455 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.632 15.000 ? 328 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.467 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.120 0.200 ? 262 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1927 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 357 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.795 1.845 ? 859 'X-RAY DIFFRACTION' ? r_mcbond_other 1.792 1.840 ? 858 'X-RAY DIFFRACTION' ? r_mcangle_it 2.737 2.749 ? 1072 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.128 2.191 ? 896 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.894 _refine_ls_shell.d_res_low 1.943 _refine_ls_shell.number_reflns_R_work 1122 _refine_ls_shell.R_factor_R_work 0.305 _refine_ls_shell.percent_reflns_obs 99.75 _refine_ls_shell.R_factor_R_free 0.308 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 5G3Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5G3Z _struct.title 'Crystal structure of adenylate kinase ancestor 3 with Zn, Mg and Ap5A bound' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5G3Z _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'ADENYLATE KINASE, ADP, TRANSFERASE, PHOSPHORYL TRANSFER, NUCLEOTIDE-BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5G3Z _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 5G3Z _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5G3Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 217 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5G3Z _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 217 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 217 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 12 ? GLY A 25 ? GLY A 12 GLY A 25 1 ? 14 HELX_P HELX_P2 2 THR A 31 ? GLU A 41 ? THR A 31 GLU A 41 1 ? 11 HELX_P HELX_P3 3 THR A 43 ? GLY A 56 ? THR A 43 GLY A 56 1 ? 14 HELX_P HELX_P4 4 PRO A 60 ? SER A 73 ? PRO A 60 SER A 73 1 ? 14 HELX_P HELX_P5 5 LYS A 74 ? LYS A 78 ? LYS A 74 LYS A 78 5 ? 5 HELX_P HELX_P6 6 THR A 89 ? LEU A 103 ? THR A 89 LEU A 103 1 ? 15 HELX_P HELX_P7 7 PRO A 116 ? GLU A 118 ? PRO A 116 GLU A 118 5 ? 3 HELX_P HELX_P8 8 GLU A 119 ? GLY A 126 ? GLU A 119 GLY A 126 1 ? 8 HELX_P HELX_P9 9 ARG A 160 ? ASP A 163 ? ARG A 160 ASP A 163 5 ? 4 HELX_P HELX_P10 10 ASN A 164 ? GLY A 190 ? ASN A 164 GLY A 190 1 ? 27 HELX_P HELX_P11 11 ASP A 200 ? GLY A 213 ? ASP A 200 GLY A 213 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 130 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 130 A ZN 1216 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc2 metalc ? ? A CYS 133 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 133 A ZN 1216 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc3 metalc ? ? A CYS 150 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 150 A ZN 1216 1_555 ? ? ? ? ? ? ? 2.424 ? ? metalc4 metalc ? ? A CYS 153 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 153 A ZN 1216 1_555 ? ? ? ? ? ? ? 2.427 ? ? metalc5 metalc ? ? C AP5 . O2G ? ? ? 1_555 D MG . MG ? ? A AP5 1217 A MG 1218 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc6 metalc ? ? C AP5 . O2D ? ? ? 1_555 D MG . MG ? ? A AP5 1217 A MG 1218 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1218 A HOH 2036 1_555 ? ? ? ? ? ? ? 2.657 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1218 A HOH 2064 1_555 ? ? ? ? ? ? ? 2.475 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1218 A HOH 2065 1_555 ? ? ? ? ? ? ? 2.503 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1218 A HOH 2089 1_555 ? ? ? ? ? ? ? 2.614 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 130 ? A CYS 130 ? 1_555 ZN ? B ZN . ? A ZN 1216 ? 1_555 SG ? A CYS 133 ? A CYS 133 ? 1_555 120.8 ? 2 SG ? A CYS 130 ? A CYS 130 ? 1_555 ZN ? B ZN . ? A ZN 1216 ? 1_555 SG ? A CYS 150 ? A CYS 150 ? 1_555 101.1 ? 3 SG ? A CYS 133 ? A CYS 133 ? 1_555 ZN ? B ZN . ? A ZN 1216 ? 1_555 SG ? A CYS 150 ? A CYS 150 ? 1_555 105.6 ? 4 SG ? A CYS 130 ? A CYS 130 ? 1_555 ZN ? B ZN . ? A ZN 1216 ? 1_555 SG ? A CYS 153 ? A CYS 153 ? 1_555 90.4 ? 5 SG ? A CYS 133 ? A CYS 133 ? 1_555 ZN ? B ZN . ? A ZN 1216 ? 1_555 SG ? A CYS 153 ? A CYS 153 ? 1_555 123.3 ? 6 SG ? A CYS 150 ? A CYS 150 ? 1_555 ZN ? B ZN . ? A ZN 1216 ? 1_555 SG ? A CYS 153 ? A CYS 153 ? 1_555 113.6 ? 7 O2G ? C AP5 . ? A AP5 1217 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O2D ? C AP5 . ? A AP5 1217 ? 1_555 81.7 ? 8 O2G ? C AP5 . ? A AP5 1217 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2036 ? 1_555 85.8 ? 9 O2D ? C AP5 . ? A AP5 1217 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2036 ? 1_555 162.1 ? 10 O2G ? C AP5 . ? A AP5 1217 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2064 ? 1_555 100.9 ? 11 O2D ? C AP5 . ? A AP5 1217 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2064 ? 1_555 95.3 ? 12 O ? E HOH . ? A HOH 2036 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2064 ? 1_555 74.4 ? 13 O2G ? C AP5 . ? A AP5 1217 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2065 ? 1_555 152.3 ? 14 O2D ? C AP5 . ? A AP5 1217 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2065 ? 1_555 125.6 ? 15 O ? E HOH . ? A HOH 2036 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2065 ? 1_555 66.5 ? 16 O ? E HOH . ? A HOH 2064 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2065 ? 1_555 74.4 ? 17 O2G ? C AP5 . ? A AP5 1217 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2089 ? 1_555 88.6 ? 18 O2D ? C AP5 . ? A AP5 1217 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2089 ? 1_555 85.3 ? 19 O ? E HOH . ? A HOH 2036 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2089 ? 1_555 107.3 ? 20 O ? E HOH . ? A HOH 2064 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2089 ? 1_555 170.5 ? 21 O ? E HOH . ? A HOH 2065 ? 1_555 MG ? D MG . ? A MG 1218 ? 1_555 O ? E HOH . ? A HOH 2089 ? 1_555 97.5 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 86 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 86 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 87 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 87 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -13.13 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 HIS A 28 ? SER A 30 ? HIS A 28 SER A 30 AA 2 PHE A 81 ? ASP A 84 ? PHE A 81 ASP A 84 AA 3 ASN A 2 ? MET A 6 ? ASN A 2 MET A 6 AA 4 TYR A 109 ? GLU A 114 ? TYR A 109 GLU A 114 AA 5 LEU A 192 ? ASP A 196 ? LEU A 192 ASP A 196 AB 1 THR A 136 ? HIS A 138 ? THR A 136 HIS A 138 AB 2 ARG A 127 ? CYS A 130 ? ARG A 127 CYS A 130 AB 3 LEU A 157 ? TYR A 158 ? LEU A 157 TYR A 158 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 29 ? N ILE A 29 O LEU A 82 ? O LEU A 82 AA 2 3 N LEU A 83 ? N LEU A 83 O LEU A 3 ? O LEU A 3 AA 3 4 N VAL A 4 ? N VAL A 4 O TYR A 109 ? O TYR A 109 AA 4 5 N ASN A 112 ? N ASN A 112 O ARG A 193 ? O ARG A 193 AB 1 2 N TYR A 137 ? N TYR A 137 O ARG A 128 ? O ARG A 128 AB 2 3 N ILE A 129 ? N ILE A 129 O TYR A 158 ? O TYR A 158 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1216 ? 4 'BINDING SITE FOR RESIDUE ZN A 1216' AC2 Software A AP5 1217 ? 40 'BINDING SITE FOR RESIDUE AP5 A 1217' AC3 Software A MG 1218 ? 5 'BINDING SITE FOR RESIDUE MG A 1218' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 130 ? CYS A 130 . ? 1_555 ? 2 AC1 4 CYS A 133 ? CYS A 133 . ? 1_555 ? 3 AC1 4 CYS A 150 ? CYS A 150 . ? 1_555 ? 4 AC1 4 CYS A 153 ? CYS A 153 . ? 1_555 ? 5 AC2 40 PRO A 9 ? PRO A 9 . ? 1_555 ? 6 AC2 40 GLY A 10 ? GLY A 10 . ? 1_555 ? 7 AC2 40 ALA A 11 ? ALA A 11 . ? 1_555 ? 8 AC2 40 GLY A 12 ? GLY A 12 . ? 1_555 ? 9 AC2 40 LYS A 13 ? LYS A 13 . ? 1_555 ? 10 AC2 40 GLY A 14 ? GLY A 14 . ? 1_555 ? 11 AC2 40 THR A 15 ? THR A 15 . ? 1_555 ? 12 AC2 40 THR A 31 ? THR A 31 . ? 1_555 ? 13 AC2 40 GLY A 32 ? GLY A 32 . ? 1_555 ? 14 AC2 40 ARG A 36 ? ARG A 36 . ? 1_555 ? 15 AC2 40 MET A 53 ? MET A 53 . ? 1_555 ? 16 AC2 40 GLU A 57 ? GLU A 57 . ? 1_555 ? 17 AC2 40 VAL A 59 ? VAL A 59 . ? 1_555 ? 18 AC2 40 THR A 64 ? THR A 64 . ? 1_555 ? 19 AC2 40 GLY A 85 ? GLY A 85 . ? 1_555 ? 20 AC2 40 ARG A 88 ? ARG A 88 . ? 1_555 ? 21 AC2 40 GLN A 92 ? GLN A 92 . ? 1_555 ? 22 AC2 40 ARG A 123 ? ARG A 123 . ? 1_555 ? 23 AC2 40 LEU A 124 ? LEU A 124 . ? 1_555 ? 24 AC2 40 ARG A 127 ? ARG A 127 . ? 1_555 ? 25 AC2 40 THR A 136 ? THR A 136 . ? 1_555 ? 26 AC2 40 TYR A 137 ? TYR A 137 . ? 1_555 ? 27 AC2 40 HIS A 138 ? HIS A 138 . ? 1_555 ? 28 AC2 40 PHE A 141 ? PHE A 141 . ? 1_555 ? 29 AC2 40 ASN A 142 ? ASN A 142 . ? 1_555 ? 30 AC2 40 ARG A 160 ? ARG A 160 . ? 1_555 ? 31 AC2 40 ARG A 171 ? ARG A 171 . ? 1_555 ? 32 AC2 40 GLN A 199 ? GLN A 199 . ? 1_555 ? 33 AC2 40 ILE A 201 ? ILE A 201 . ? 1_555 ? 34 AC2 40 MG D . ? MG A 1218 . ? 1_555 ? 35 AC2 40 HOH E . ? HOH A 2010 . ? 1_555 ? 36 AC2 40 HOH E . ? HOH A 2016 . ? 1_555 ? 37 AC2 40 HOH E . ? HOH A 2017 . ? 1_555 ? 38 AC2 40 HOH E . ? HOH A 2030 . ? 1_555 ? 39 AC2 40 HOH E . ? HOH A 2036 . ? 1_555 ? 40 AC2 40 HOH E . ? HOH A 2042 . ? 1_555 ? 41 AC2 40 HOH E . ? HOH A 2046 . ? 1_555 ? 42 AC2 40 HOH E . ? HOH A 2089 . ? 1_555 ? 43 AC2 40 HOH E . ? HOH A 2100 . ? 1_555 ? 44 AC2 40 HOH E . ? HOH A 2111 . ? 1_555 ? 45 AC3 5 AP5 C . ? AP5 A 1217 . ? 1_555 ? 46 AC3 5 HOH E . ? HOH A 2036 . ? 1_555 ? 47 AC3 5 HOH E . ? HOH A 2064 . ? 1_555 ? 48 AC3 5 HOH E . ? HOH A 2065 . ? 1_555 ? 49 AC3 5 HOH E . ? HOH A 2089 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 36 ? ? CZ A ARG 36 ? ? NH1 A ARG 36 ? ? 123.32 120.30 3.02 0.50 N 2 1 NE A ARG 88 ? ? CZ A ARG 88 ? ? NH1 A ARG 88 ? ? 124.81 120.30 4.51 0.50 N 3 1 NE A ARG 88 ? ? CZ A ARG 88 ? ? NH2 A ARG 88 ? ? 115.36 120.30 -4.94 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 140 ? ? -103.18 -61.80 2 1 ASN A 142 ? ? -158.30 66.75 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 216 ? A LYS 216 2 1 Y 1 A GLN 217 ? A GLN 217 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 AP5 PA P N S 14 AP5 O1A O N N 15 AP5 O2A O N N 16 AP5 O3A O N N 17 AP5 PB P N S 18 AP5 O1B O N N 19 AP5 O2B O N N 20 AP5 O3B O N N 21 AP5 PG P N N 22 AP5 O1G O N N 23 AP5 O2G O N N 24 AP5 O3G O N N 25 AP5 PD P N S 26 AP5 O1D O N N 27 AP5 O2D O N N 28 AP5 O3D O N N 29 AP5 PE P N S 30 AP5 O1E O N N 31 AP5 O2E O N N 32 AP5 O5F O N N 33 AP5 C5F C N N 34 AP5 C4F C N R 35 AP5 O4F O N N 36 AP5 C3F C N S 37 AP5 O3F O N N 38 AP5 C2F C N R 39 AP5 O2F O N N 40 AP5 C1F C N R 41 AP5 N9A N Y N 42 AP5 C8A C Y N 43 AP5 N7A N Y N 44 AP5 C5A C Y N 45 AP5 C6A C Y N 46 AP5 N6A N N N 47 AP5 N1A N Y N 48 AP5 C2A C Y N 49 AP5 N3A N Y N 50 AP5 C4A C Y N 51 AP5 O5J O N N 52 AP5 C5J C N N 53 AP5 C4J C N R 54 AP5 O4J O N N 55 AP5 C3J C N S 56 AP5 O3J O N N 57 AP5 C2J C N R 58 AP5 O2J O N N 59 AP5 C1J C N R 60 AP5 N9B N Y N 61 AP5 C8B C Y N 62 AP5 N7B N Y N 63 AP5 C5B C Y N 64 AP5 C6B C Y N 65 AP5 N6B N N N 66 AP5 N1B N Y N 67 AP5 C2B C Y N 68 AP5 N3B N Y N 69 AP5 C4B C Y N 70 AP5 HOA2 H N N 71 AP5 HOB2 H N N 72 AP5 HOG2 H N N 73 AP5 HOD2 H N N 74 AP5 HOE2 H N N 75 AP5 H51A H N N 76 AP5 H52A H N N 77 AP5 H4F H N N 78 AP5 H3F H N N 79 AP5 HO3A H N N 80 AP5 H2F H N N 81 AP5 HO2A H N N 82 AP5 H1F H N N 83 AP5 H8A H N N 84 AP5 H61A H N N 85 AP5 H62A H N N 86 AP5 H2A H N N 87 AP5 H51B H N N 88 AP5 H52B H N N 89 AP5 H4J H N N 90 AP5 H3J H N N 91 AP5 HO3B H N N 92 AP5 H2J H N N 93 AP5 HO2B H N N 94 AP5 H1J H N N 95 AP5 H8B H N N 96 AP5 H61B H N N 97 AP5 H62B H N N 98 AP5 H2B H N N 99 ARG N N N N 100 ARG CA C N S 101 ARG C C N N 102 ARG O O N N 103 ARG CB C N N 104 ARG CG C N N 105 ARG CD C N N 106 ARG NE N N N 107 ARG CZ C N N 108 ARG NH1 N N N 109 ARG NH2 N N N 110 ARG OXT O N N 111 ARG H H N N 112 ARG H2 H N N 113 ARG HA H N N 114 ARG HB2 H N N 115 ARG HB3 H N N 116 ARG HG2 H N N 117 ARG HG3 H N N 118 ARG HD2 H N N 119 ARG HD3 H N N 120 ARG HE H N N 121 ARG HH11 H N N 122 ARG HH12 H N N 123 ARG HH21 H N N 124 ARG HH22 H N N 125 ARG HXT H N N 126 ASN N N N N 127 ASN CA C N S 128 ASN C C N N 129 ASN O O N N 130 ASN CB C N N 131 ASN CG C N N 132 ASN OD1 O N N 133 ASN ND2 N N N 134 ASN OXT O N N 135 ASN H H N N 136 ASN H2 H N N 137 ASN HA H N N 138 ASN HB2 H N N 139 ASN HB3 H N N 140 ASN HD21 H N N 141 ASN HD22 H N N 142 ASN HXT H N N 143 ASP N N N N 144 ASP CA C N S 145 ASP C C N N 146 ASP O O N N 147 ASP CB C N N 148 ASP CG C N N 149 ASP OD1 O N N 150 ASP OD2 O N N 151 ASP OXT O N N 152 ASP H H N N 153 ASP H2 H N N 154 ASP HA H N N 155 ASP HB2 H N N 156 ASP HB3 H N N 157 ASP HD2 H N N 158 ASP HXT H N N 159 CYS N N N N 160 CYS CA C N R 161 CYS C C N N 162 CYS O O N N 163 CYS CB C N N 164 CYS SG S N N 165 CYS OXT O N N 166 CYS H H N N 167 CYS H2 H N N 168 CYS HA H N N 169 CYS HB2 H N N 170 CYS HB3 H N N 171 CYS HG H N N 172 CYS HXT H N N 173 GLN N N N N 174 GLN CA C N S 175 GLN C C N N 176 GLN O O N N 177 GLN CB C N N 178 GLN CG C N N 179 GLN CD C N N 180 GLN OE1 O N N 181 GLN NE2 N N N 182 GLN OXT O N N 183 GLN H H N N 184 GLN H2 H N N 185 GLN HA H N N 186 GLN HB2 H N N 187 GLN HB3 H N N 188 GLN HG2 H N N 189 GLN HG3 H N N 190 GLN HE21 H N N 191 GLN HE22 H N N 192 GLN HXT H N N 193 GLU N N N N 194 GLU CA C N S 195 GLU C C N N 196 GLU O O N N 197 GLU CB C N N 198 GLU CG C N N 199 GLU CD C N N 200 GLU OE1 O N N 201 GLU OE2 O N N 202 GLU OXT O N N 203 GLU H H N N 204 GLU H2 H N N 205 GLU HA H N N 206 GLU HB2 H N N 207 GLU HB3 H N N 208 GLU HG2 H N N 209 GLU HG3 H N N 210 GLU HE2 H N N 211 GLU HXT H N N 212 GLY N N N N 213 GLY CA C N N 214 GLY C C N N 215 GLY O O N N 216 GLY OXT O N N 217 GLY H H N N 218 GLY H2 H N N 219 GLY HA2 H N N 220 GLY HA3 H N N 221 GLY HXT H N N 222 HIS N N N N 223 HIS CA C N S 224 HIS C C N N 225 HIS O O N N 226 HIS CB C N N 227 HIS CG C Y N 228 HIS ND1 N Y N 229 HIS CD2 C Y N 230 HIS CE1 C Y N 231 HIS NE2 N Y N 232 HIS OXT O N N 233 HIS H H N N 234 HIS H2 H N N 235 HIS HA H N N 236 HIS HB2 H N N 237 HIS HB3 H N N 238 HIS HD1 H N N 239 HIS HD2 H N N 240 HIS HE1 H N N 241 HIS HE2 H N N 242 HIS HXT H N N 243 HOH O O N N 244 HOH H1 H N N 245 HOH H2 H N N 246 ILE N N N N 247 ILE CA C N S 248 ILE C C N N 249 ILE O O N N 250 ILE CB C N S 251 ILE CG1 C N N 252 ILE CG2 C N N 253 ILE CD1 C N N 254 ILE OXT O N N 255 ILE H H N N 256 ILE H2 H N N 257 ILE HA H N N 258 ILE HB H N N 259 ILE HG12 H N N 260 ILE HG13 H N N 261 ILE HG21 H N N 262 ILE HG22 H N N 263 ILE HG23 H N N 264 ILE HD11 H N N 265 ILE HD12 H N N 266 ILE HD13 H N N 267 ILE HXT H N N 268 LEU N N N N 269 LEU CA C N S 270 LEU C C N N 271 LEU O O N N 272 LEU CB C N N 273 LEU CG C N N 274 LEU CD1 C N N 275 LEU CD2 C N N 276 LEU OXT O N N 277 LEU H H N N 278 LEU H2 H N N 279 LEU HA H N N 280 LEU HB2 H N N 281 LEU HB3 H N N 282 LEU HG H N N 283 LEU HD11 H N N 284 LEU HD12 H N N 285 LEU HD13 H N N 286 LEU HD21 H N N 287 LEU HD22 H N N 288 LEU HD23 H N N 289 LEU HXT H N N 290 LYS N N N N 291 LYS CA C N S 292 LYS C C N N 293 LYS O O N N 294 LYS CB C N N 295 LYS CG C N N 296 LYS CD C N N 297 LYS CE C N N 298 LYS NZ N N N 299 LYS OXT O N N 300 LYS H H N N 301 LYS H2 H N N 302 LYS HA H N N 303 LYS HB2 H N N 304 LYS HB3 H N N 305 LYS HG2 H N N 306 LYS HG3 H N N 307 LYS HD2 H N N 308 LYS HD3 H N N 309 LYS HE2 H N N 310 LYS HE3 H N N 311 LYS HZ1 H N N 312 LYS HZ2 H N N 313 LYS HZ3 H N N 314 LYS HXT H N N 315 MET N N N N 316 MET CA C N S 317 MET C C N N 318 MET O O N N 319 MET CB C N N 320 MET CG C N N 321 MET SD S N N 322 MET CE C N N 323 MET OXT O N N 324 MET H H N N 325 MET H2 H N N 326 MET HA H N N 327 MET HB2 H N N 328 MET HB3 H N N 329 MET HG2 H N N 330 MET HG3 H N N 331 MET HE1 H N N 332 MET HE2 H N N 333 MET HE3 H N N 334 MET HXT H N N 335 MG MG MG N N 336 PHE N N N N 337 PHE CA C N S 338 PHE C C N N 339 PHE O O N N 340 PHE CB C N N 341 PHE CG C Y N 342 PHE CD1 C Y N 343 PHE CD2 C Y N 344 PHE CE1 C Y N 345 PHE CE2 C Y N 346 PHE CZ C Y N 347 PHE OXT O N N 348 PHE H H N N 349 PHE H2 H N N 350 PHE HA H N N 351 PHE HB2 H N N 352 PHE HB3 H N N 353 PHE HD1 H N N 354 PHE HD2 H N N 355 PHE HE1 H N N 356 PHE HE2 H N N 357 PHE HZ H N N 358 PHE HXT H N N 359 PRO N N N N 360 PRO CA C N S 361 PRO C C N N 362 PRO O O N N 363 PRO CB C N N 364 PRO CG C N N 365 PRO CD C N N 366 PRO OXT O N N 367 PRO H H N N 368 PRO HA H N N 369 PRO HB2 H N N 370 PRO HB3 H N N 371 PRO HG2 H N N 372 PRO HG3 H N N 373 PRO HD2 H N N 374 PRO HD3 H N N 375 PRO HXT H N N 376 SER N N N N 377 SER CA C N S 378 SER C C N N 379 SER O O N N 380 SER CB C N N 381 SER OG O N N 382 SER OXT O N N 383 SER H H N N 384 SER H2 H N N 385 SER HA H N N 386 SER HB2 H N N 387 SER HB3 H N N 388 SER HG H N N 389 SER HXT H N N 390 THR N N N N 391 THR CA C N S 392 THR C C N N 393 THR O O N N 394 THR CB C N R 395 THR OG1 O N N 396 THR CG2 C N N 397 THR OXT O N N 398 THR H H N N 399 THR H2 H N N 400 THR HA H N N 401 THR HB H N N 402 THR HG1 H N N 403 THR HG21 H N N 404 THR HG22 H N N 405 THR HG23 H N N 406 THR HXT H N N 407 TYR N N N N 408 TYR CA C N S 409 TYR C C N N 410 TYR O O N N 411 TYR CB C N N 412 TYR CG C Y N 413 TYR CD1 C Y N 414 TYR CD2 C Y N 415 TYR CE1 C Y N 416 TYR CE2 C Y N 417 TYR CZ C Y N 418 TYR OH O N N 419 TYR OXT O N N 420 TYR H H N N 421 TYR H2 H N N 422 TYR HA H N N 423 TYR HB2 H N N 424 TYR HB3 H N N 425 TYR HD1 H N N 426 TYR HD2 H N N 427 TYR HE1 H N N 428 TYR HE2 H N N 429 TYR HH H N N 430 TYR HXT H N N 431 VAL N N N N 432 VAL CA C N S 433 VAL C C N N 434 VAL O O N N 435 VAL CB C N N 436 VAL CG1 C N N 437 VAL CG2 C N N 438 VAL OXT O N N 439 VAL H H N N 440 VAL H2 H N N 441 VAL HA H N N 442 VAL HB H N N 443 VAL HG11 H N N 444 VAL HG12 H N N 445 VAL HG13 H N N 446 VAL HG21 H N N 447 VAL HG22 H N N 448 VAL HG23 H N N 449 VAL HXT H N N 450 ZN ZN ZN N N 451 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 AP5 PA O1A doub N N 13 AP5 PA O2A sing N N 14 AP5 PA O3A sing N N 15 AP5 PA O5F sing N N 16 AP5 O2A HOA2 sing N N 17 AP5 O3A PB sing N N 18 AP5 PB O1B doub N N 19 AP5 PB O2B sing N N 20 AP5 PB O3B sing N N 21 AP5 O2B HOB2 sing N N 22 AP5 O3B PG sing N N 23 AP5 PG O1G doub N N 24 AP5 PG O2G sing N N 25 AP5 PG O3G sing N N 26 AP5 O2G HOG2 sing N N 27 AP5 O3G PD sing N N 28 AP5 PD O1D doub N N 29 AP5 PD O2D sing N N 30 AP5 PD O3D sing N N 31 AP5 O2D HOD2 sing N N 32 AP5 O3D PE sing N N 33 AP5 PE O1E doub N N 34 AP5 PE O2E sing N N 35 AP5 PE O5J sing N N 36 AP5 O2E HOE2 sing N N 37 AP5 O5F C5F sing N N 38 AP5 C5F C4F sing N N 39 AP5 C5F H51A sing N N 40 AP5 C5F H52A sing N N 41 AP5 C4F O4F sing N N 42 AP5 C4F C3F sing N N 43 AP5 C4F H4F sing N N 44 AP5 O4F C1F sing N N 45 AP5 C3F O3F sing N N 46 AP5 C3F C2F sing N N 47 AP5 C3F H3F sing N N 48 AP5 O3F HO3A sing N N 49 AP5 C2F O2F sing N N 50 AP5 C2F C1F sing N N 51 AP5 C2F H2F sing N N 52 AP5 O2F HO2A sing N N 53 AP5 C1F N9A sing N N 54 AP5 C1F H1F sing N N 55 AP5 N9A C8A sing Y N 56 AP5 N9A C4A sing Y N 57 AP5 C8A N7A doub Y N 58 AP5 C8A H8A sing N N 59 AP5 N7A C5A sing Y N 60 AP5 C5A C6A sing Y N 61 AP5 C5A C4A doub Y N 62 AP5 C6A N6A sing N N 63 AP5 C6A N1A doub Y N 64 AP5 N6A H61A sing N N 65 AP5 N6A H62A sing N N 66 AP5 N1A C2A sing Y N 67 AP5 C2A N3A doub Y N 68 AP5 C2A H2A sing N N 69 AP5 N3A C4A sing Y N 70 AP5 O5J C5J sing N N 71 AP5 C5J C4J sing N N 72 AP5 C5J H51B sing N N 73 AP5 C5J H52B sing N N 74 AP5 C4J O4J sing N N 75 AP5 C4J C3J sing N N 76 AP5 C4J H4J sing N N 77 AP5 O4J C1J sing N N 78 AP5 C3J O3J sing N N 79 AP5 C3J C2J sing N N 80 AP5 C3J H3J sing N N 81 AP5 O3J HO3B sing N N 82 AP5 C2J O2J sing N N 83 AP5 C2J C1J sing N N 84 AP5 C2J H2J sing N N 85 AP5 O2J HO2B sing N N 86 AP5 C1J N9B sing N N 87 AP5 C1J H1J sing N N 88 AP5 N9B C8B sing Y N 89 AP5 N9B C4B sing Y N 90 AP5 C8B N7B doub Y N 91 AP5 C8B H8B sing N N 92 AP5 N7B C5B sing Y N 93 AP5 C5B C6B sing Y N 94 AP5 C5B C4B doub Y N 95 AP5 C6B N6B sing N N 96 AP5 C6B N1B doub Y N 97 AP5 N6B H61B sing N N 98 AP5 N6B H62B sing N N 99 AP5 N1B C2B sing Y N 100 AP5 C2B N3B doub Y N 101 AP5 C2B H2B sing N N 102 AP5 N3B C4B sing Y N 103 ARG N CA sing N N 104 ARG N H sing N N 105 ARG N H2 sing N N 106 ARG CA C sing N N 107 ARG CA CB sing N N 108 ARG CA HA sing N N 109 ARG C O doub N N 110 ARG C OXT sing N N 111 ARG CB CG sing N N 112 ARG CB HB2 sing N N 113 ARG CB HB3 sing N N 114 ARG CG CD sing N N 115 ARG CG HG2 sing N N 116 ARG CG HG3 sing N N 117 ARG CD NE sing N N 118 ARG CD HD2 sing N N 119 ARG CD HD3 sing N N 120 ARG NE CZ sing N N 121 ARG NE HE sing N N 122 ARG CZ NH1 sing N N 123 ARG CZ NH2 doub N N 124 ARG NH1 HH11 sing N N 125 ARG NH1 HH12 sing N N 126 ARG NH2 HH21 sing N N 127 ARG NH2 HH22 sing N N 128 ARG OXT HXT sing N N 129 ASN N CA sing N N 130 ASN N H sing N N 131 ASN N H2 sing N N 132 ASN CA C sing N N 133 ASN CA CB sing N N 134 ASN CA HA sing N N 135 ASN C O doub N N 136 ASN C OXT sing N N 137 ASN CB CG sing N N 138 ASN CB HB2 sing N N 139 ASN CB HB3 sing N N 140 ASN CG OD1 doub N N 141 ASN CG ND2 sing N N 142 ASN ND2 HD21 sing N N 143 ASN ND2 HD22 sing N N 144 ASN OXT HXT sing N N 145 ASP N CA sing N N 146 ASP N H sing N N 147 ASP N H2 sing N N 148 ASP CA C sing N N 149 ASP CA CB sing N N 150 ASP CA HA sing N N 151 ASP C O doub N N 152 ASP C OXT sing N N 153 ASP CB CG sing N N 154 ASP CB HB2 sing N N 155 ASP CB HB3 sing N N 156 ASP CG OD1 doub N N 157 ASP CG OD2 sing N N 158 ASP OD2 HD2 sing N N 159 ASP OXT HXT sing N N 160 CYS N CA sing N N 161 CYS N H sing N N 162 CYS N H2 sing N N 163 CYS CA C sing N N 164 CYS CA CB sing N N 165 CYS CA HA sing N N 166 CYS C O doub N N 167 CYS C OXT sing N N 168 CYS CB SG sing N N 169 CYS CB HB2 sing N N 170 CYS CB HB3 sing N N 171 CYS SG HG sing N N 172 CYS OXT HXT sing N N 173 GLN N CA sing N N 174 GLN N H sing N N 175 GLN N H2 sing N N 176 GLN CA C sing N N 177 GLN CA CB sing N N 178 GLN CA HA sing N N 179 GLN C O doub N N 180 GLN C OXT sing N N 181 GLN CB CG sing N N 182 GLN CB HB2 sing N N 183 GLN CB HB3 sing N N 184 GLN CG CD sing N N 185 GLN CG HG2 sing N N 186 GLN CG HG3 sing N N 187 GLN CD OE1 doub N N 188 GLN CD NE2 sing N N 189 GLN NE2 HE21 sing N N 190 GLN NE2 HE22 sing N N 191 GLN OXT HXT sing N N 192 GLU N CA sing N N 193 GLU N H sing N N 194 GLU N H2 sing N N 195 GLU CA C sing N N 196 GLU CA CB sing N N 197 GLU CA HA sing N N 198 GLU C O doub N N 199 GLU C OXT sing N N 200 GLU CB CG sing N N 201 GLU CB HB2 sing N N 202 GLU CB HB3 sing N N 203 GLU CG CD sing N N 204 GLU CG HG2 sing N N 205 GLU CG HG3 sing N N 206 GLU CD OE1 doub N N 207 GLU CD OE2 sing N N 208 GLU OE2 HE2 sing N N 209 GLU OXT HXT sing N N 210 GLY N CA sing N N 211 GLY N H sing N N 212 GLY N H2 sing N N 213 GLY CA C sing N N 214 GLY CA HA2 sing N N 215 GLY CA HA3 sing N N 216 GLY C O doub N N 217 GLY C OXT sing N N 218 GLY OXT HXT sing N N 219 HIS N CA sing N N 220 HIS N H sing N N 221 HIS N H2 sing N N 222 HIS CA C sing N N 223 HIS CA CB sing N N 224 HIS CA HA sing N N 225 HIS C O doub N N 226 HIS C OXT sing N N 227 HIS CB CG sing N N 228 HIS CB HB2 sing N N 229 HIS CB HB3 sing N N 230 HIS CG ND1 sing Y N 231 HIS CG CD2 doub Y N 232 HIS ND1 CE1 doub Y N 233 HIS ND1 HD1 sing N N 234 HIS CD2 NE2 sing Y N 235 HIS CD2 HD2 sing N N 236 HIS CE1 NE2 sing Y N 237 HIS CE1 HE1 sing N N 238 HIS NE2 HE2 sing N N 239 HIS OXT HXT sing N N 240 HOH O H1 sing N N 241 HOH O H2 sing N N 242 ILE N CA sing N N 243 ILE N H sing N N 244 ILE N H2 sing N N 245 ILE CA C sing N N 246 ILE CA CB sing N N 247 ILE CA HA sing N N 248 ILE C O doub N N 249 ILE C OXT sing N N 250 ILE CB CG1 sing N N 251 ILE CB CG2 sing N N 252 ILE CB HB sing N N 253 ILE CG1 CD1 sing N N 254 ILE CG1 HG12 sing N N 255 ILE CG1 HG13 sing N N 256 ILE CG2 HG21 sing N N 257 ILE CG2 HG22 sing N N 258 ILE CG2 HG23 sing N N 259 ILE CD1 HD11 sing N N 260 ILE CD1 HD12 sing N N 261 ILE CD1 HD13 sing N N 262 ILE OXT HXT sing N N 263 LEU N CA sing N N 264 LEU N H sing N N 265 LEU N H2 sing N N 266 LEU CA C sing N N 267 LEU CA CB sing N N 268 LEU CA HA sing N N 269 LEU C O doub N N 270 LEU C OXT sing N N 271 LEU CB CG sing N N 272 LEU CB HB2 sing N N 273 LEU CB HB3 sing N N 274 LEU CG CD1 sing N N 275 LEU CG CD2 sing N N 276 LEU CG HG sing N N 277 LEU CD1 HD11 sing N N 278 LEU CD1 HD12 sing N N 279 LEU CD1 HD13 sing N N 280 LEU CD2 HD21 sing N N 281 LEU CD2 HD22 sing N N 282 LEU CD2 HD23 sing N N 283 LEU OXT HXT sing N N 284 LYS N CA sing N N 285 LYS N H sing N N 286 LYS N H2 sing N N 287 LYS CA C sing N N 288 LYS CA CB sing N N 289 LYS CA HA sing N N 290 LYS C O doub N N 291 LYS C OXT sing N N 292 LYS CB CG sing N N 293 LYS CB HB2 sing N N 294 LYS CB HB3 sing N N 295 LYS CG CD sing N N 296 LYS CG HG2 sing N N 297 LYS CG HG3 sing N N 298 LYS CD CE sing N N 299 LYS CD HD2 sing N N 300 LYS CD HD3 sing N N 301 LYS CE NZ sing N N 302 LYS CE HE2 sing N N 303 LYS CE HE3 sing N N 304 LYS NZ HZ1 sing N N 305 LYS NZ HZ2 sing N N 306 LYS NZ HZ3 sing N N 307 LYS OXT HXT sing N N 308 MET N CA sing N N 309 MET N H sing N N 310 MET N H2 sing N N 311 MET CA C sing N N 312 MET CA CB sing N N 313 MET CA HA sing N N 314 MET C O doub N N 315 MET C OXT sing N N 316 MET CB CG sing N N 317 MET CB HB2 sing N N 318 MET CB HB3 sing N N 319 MET CG SD sing N N 320 MET CG HG2 sing N N 321 MET CG HG3 sing N N 322 MET SD CE sing N N 323 MET CE HE1 sing N N 324 MET CE HE2 sing N N 325 MET CE HE3 sing N N 326 MET OXT HXT sing N N 327 PHE N CA sing N N 328 PHE N H sing N N 329 PHE N H2 sing N N 330 PHE CA C sing N N 331 PHE CA CB sing N N 332 PHE CA HA sing N N 333 PHE C O doub N N 334 PHE C OXT sing N N 335 PHE CB CG sing N N 336 PHE CB HB2 sing N N 337 PHE CB HB3 sing N N 338 PHE CG CD1 doub Y N 339 PHE CG CD2 sing Y N 340 PHE CD1 CE1 sing Y N 341 PHE CD1 HD1 sing N N 342 PHE CD2 CE2 doub Y N 343 PHE CD2 HD2 sing N N 344 PHE CE1 CZ doub Y N 345 PHE CE1 HE1 sing N N 346 PHE CE2 CZ sing Y N 347 PHE CE2 HE2 sing N N 348 PHE CZ HZ sing N N 349 PHE OXT HXT sing N N 350 PRO N CA sing N N 351 PRO N CD sing N N 352 PRO N H sing N N 353 PRO CA C sing N N 354 PRO CA CB sing N N 355 PRO CA HA sing N N 356 PRO C O doub N N 357 PRO C OXT sing N N 358 PRO CB CG sing N N 359 PRO CB HB2 sing N N 360 PRO CB HB3 sing N N 361 PRO CG CD sing N N 362 PRO CG HG2 sing N N 363 PRO CG HG3 sing N N 364 PRO CD HD2 sing N N 365 PRO CD HD3 sing N N 366 PRO OXT HXT sing N N 367 SER N CA sing N N 368 SER N H sing N N 369 SER N H2 sing N N 370 SER CA C sing N N 371 SER CA CB sing N N 372 SER CA HA sing N N 373 SER C O doub N N 374 SER C OXT sing N N 375 SER CB OG sing N N 376 SER CB HB2 sing N N 377 SER CB HB3 sing N N 378 SER OG HG sing N N 379 SER OXT HXT sing N N 380 THR N CA sing N N 381 THR N H sing N N 382 THR N H2 sing N N 383 THR CA C sing N N 384 THR CA CB sing N N 385 THR CA HA sing N N 386 THR C O doub N N 387 THR C OXT sing N N 388 THR CB OG1 sing N N 389 THR CB CG2 sing N N 390 THR CB HB sing N N 391 THR OG1 HG1 sing N N 392 THR CG2 HG21 sing N N 393 THR CG2 HG22 sing N N 394 THR CG2 HG23 sing N N 395 THR OXT HXT sing N N 396 TYR N CA sing N N 397 TYR N H sing N N 398 TYR N H2 sing N N 399 TYR CA C sing N N 400 TYR CA CB sing N N 401 TYR CA HA sing N N 402 TYR C O doub N N 403 TYR C OXT sing N N 404 TYR CB CG sing N N 405 TYR CB HB2 sing N N 406 TYR CB HB3 sing N N 407 TYR CG CD1 doub Y N 408 TYR CG CD2 sing Y N 409 TYR CD1 CE1 sing Y N 410 TYR CD1 HD1 sing N N 411 TYR CD2 CE2 doub Y N 412 TYR CD2 HD2 sing N N 413 TYR CE1 CZ doub Y N 414 TYR CE1 HE1 sing N N 415 TYR CE2 CZ sing Y N 416 TYR CE2 HE2 sing N N 417 TYR CZ OH sing N N 418 TYR OH HH sing N N 419 TYR OXT HXT sing N N 420 VAL N CA sing N N 421 VAL N H sing N N 422 VAL N H2 sing N N 423 VAL CA C sing N N 424 VAL CA CB sing N N 425 VAL CA HA sing N N 426 VAL C O doub N N 427 VAL C OXT sing N N 428 VAL CB CG1 sing N N 429 VAL CB CG2 sing N N 430 VAL CB HB sing N N 431 VAL CG1 HG11 sing N N 432 VAL CG1 HG12 sing N N 433 VAL CG1 HG13 sing N N 434 VAL CG2 HG21 sing N N 435 VAL CG2 HG22 sing N N 436 VAL CG2 HG23 sing N N 437 VAL OXT HXT sing N N 438 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1P3J _pdbx_initial_refinement_model.details 'PDB ENTRY 1P3J' # _atom_sites.entry_id 5G3Z _atom_sites.fract_transf_matrix[1][1] 0.015011 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012914 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025888 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S ZN # loop_