HEADER TRANSFERASE 06-MAY-16 5G48 TITLE H.PYLORI BETA CLAMP IN COMPLEX WITH DIFLUNISAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA CLAMP; COMPND 5 OTHER_DETAILS: BETA CLAMP IN COMPLEX WITH DIFLUNISAL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 ORGAN: STOMACH KEYWDS TRANSFERASE, DNA SLIDING CLAMP, PROCESSIVITY PROMOTING FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR P.PANDEY,S.GOURINATH REVDAT 4 10-JAN-24 5G48 1 REMARK REVDAT 3 23-AUG-17 5G48 1 JRNL REVDAT 2 16-AUG-17 5G48 1 JRNL REVDAT 1 21-JUN-17 5G48 0 JRNL AUTH P.PANDEY,V.VERMA,G.GAUTAM,N.KUMARI,S.K.DHAR,S.GOURINATH JRNL TITL TARGETING THE BETA-CLAMP IN HELICOBACTER PYLORI WITH JRNL TITL 2 FDA-APPROVED DRUGS REVEALS MICROMOLAR INHIBITION BY JRNL TITL 3 DIFLUNISAL. JRNL REF FEBS LETT. V. 591 2311 2017 JRNL REFN ISSN 1873-3468 JRNL PMID 28656718 JRNL DOI 10.1002/1873-3468.12734 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.PANDEY,K.F.TARIQUE,M.MAZUMDER,S.A.A.REHMAN,N.KUMARI, REMARK 1 AUTH 2 S.GOURINATH REMARK 1 TITL STRUCTURAL INSIGHT INTO BETA-CLAMP AND ITS INTERACTION WITH REMARK 1 TITL 2 DNA LIGASE IN HELICOBACTER PYLORI. REMARK 1 REF SCI.REP. V. 6 31181 2016 REMARK 1 REFN ESSN 2045-2322 REMARK 1 PMID 27499105 REMARK 1 DOI 10.1038/SREP31181 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 37427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1944 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2465 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5897 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.72000 REMARK 3 B22 (A**2) : 5.48000 REMARK 3 B33 (A**2) : -2.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -6.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.739 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6036 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5899 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8128 ; 1.169 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13704 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 741 ; 6.363 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;40.089 ;26.032 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1179 ;14.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.037 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 944 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6615 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1243 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2973 ; 0.799 ; 3.032 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2972 ; 0.799 ; 3.032 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3711 ; 1.493 ; 4.544 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3063 ; 0.480 ; 3.145 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1360 0.3510 9.8710 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.1035 REMARK 3 T33: 0.1532 T12: -0.0048 REMARK 3 T13: 0.0641 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.6388 L22: 0.0118 REMARK 3 L33: 0.9728 L12: 0.0710 REMARK 3 L13: -0.3714 L23: 0.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.1020 S13: 0.1367 REMARK 3 S21: 0.0016 S22: 0.0180 S23: 0.0230 REMARK 3 S31: 0.0767 S32: -0.1187 S33: 0.0091 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 374 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5930 -0.0390 31.8180 REMARK 3 T TENSOR REMARK 3 T11: 0.0498 T22: 0.1232 REMARK 3 T33: 0.1372 T12: 0.0104 REMARK 3 T13: 0.0700 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.6249 L22: 0.0258 REMARK 3 L33: 0.7284 L12: 0.0920 REMARK 3 L13: -0.2590 L23: -0.1005 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.1089 S13: 0.0850 REMARK 3 S21: -0.0144 S22: -0.0021 S23: -0.0048 REMARK 3 S31: 0.0883 S32: 0.1090 S33: -0.0208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5G48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1290066782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39385 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 80.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 80.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4RKI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% W/V PEG 20,000, 20% V/V PEG 550MME, REMARK 280 0.01M MGCL2, 0.1M MOPS/ HEPES-NA PH7.3, 0.2M AMMONIUM CITRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.18600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 82.31100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -82.31100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 356 REMARK 465 LYS A 357 REMARK 465 GLN A 358 REMARK 465 SER A 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 151 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN A 246 NZ LYS B 251 1554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 39 -128.07 55.23 REMARK 500 ASP A 84 59.81 -90.34 REMARK 500 ASP A 93 -117.39 53.18 REMARK 500 ASN A 101 -104.27 49.88 REMARK 500 THR A 175 -18.52 78.12 REMARK 500 TYR A 212 -69.61 -137.17 REMARK 500 MET A 222 -45.90 -136.18 REMARK 500 ASP A 244 98.02 -65.70 REMARK 500 ASN A 342 -129.61 -109.02 REMARK 500 LEU A 354 60.44 61.19 REMARK 500 LYS B 39 -121.71 56.23 REMARK 500 ASP B 48 -154.59 -146.53 REMARK 500 ASP B 84 42.77 -88.72 REMARK 500 ASP B 93 94.26 53.23 REMARK 500 ASN B 101 -115.91 56.08 REMARK 500 THR B 175 -13.02 74.35 REMARK 500 TYR B 212 -68.02 -138.11 REMARK 500 MET B 222 -53.13 -129.71 REMARK 500 ASP B 293 30.66 -90.68 REMARK 500 SER B 297 -19.49 92.17 REMARK 500 LYS B 314 -104.70 -125.73 REMARK 500 ALA B 315 114.73 -164.15 REMARK 500 ASN B 342 -117.11 -114.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FL B 1375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FL A 1375 DBREF 5G48 A 1 374 UNP O25242 DPO3B_HELPY 1 374 DBREF 5G48 B 1 374 UNP O25242 DPO3B_HELPY 1 374 SEQRES 1 A 374 MET LYS ILE SER VAL SER LYS ASN ASP LEU GLU ASN ALA SEQRES 2 A 374 LEU ARG TYR LEU GLN ALA PHE LEU ASP LYS LYS ASP ALA SEQRES 3 A 374 SER SER ILE ALA SER HIS ILE HIS LEU GLU VAL ILE LYS SEQRES 4 A 374 GLU LYS LEU PHE LEU LYS ALA SER ASP SER ASP ILE GLY SEQRES 5 A 374 LEU LYS SER TYR ILE PHE THR GLN SER SER ASP LYS GLU SEQRES 6 A 374 GLY VAL GLY THR ILE ASN GLY LYS LYS PHE LEU ASP ILE SEQRES 7 A 374 ILE SER CYS LEU LYS ASP SER ASN ILE ILE LEU GLU THR SEQRES 8 A 374 LYS ASP ASP SER LEU ALA ILE LYS GLN ASN LYS SER SER SEQRES 9 A 374 PHE LYS LEU PRO MET PHE ASP ALA ASP GLU PHE PRO GLU SEQRES 10 A 374 PHE PRO VAL ILE ASP PRO LYS VAL SER ILE GLU VAL ASN SEQRES 11 A 374 ALA PRO PHE LEU VAL ASP ALA PHE LYS LYS ILE ALA PRO SEQRES 12 A 374 VAL ILE GLU GLN THR SER HIS LYS ARG GLU LEU ALA GLY SEQRES 13 A 374 ILE LEU MET GLN PHE ASP GLN LYS HIS GLN THR LEU SER SEQRES 14 A 374 VAL VAL GLY THR ASP THR LYS ARG LEU SER TYR THR GLN SEQRES 15 A 374 LEU GLU LYS ILE SER ILE HIS SER THR GLU GLU ASP ILE SEQRES 16 A 374 SER CYS ILE LEU PRO LYS ARG ALA LEU LEU GLU ILE LEU SEQRES 17 A 374 LYS LEU PHE TYR GLU ASN PHE SER PHE LYS SER ASP GLY SEQRES 18 A 374 MET LEU ALA VAL ILE GLU ASN GLU MET HIS THR PHE PHE SEQRES 19 A 374 THR LYS LEU ILE ASP GLY ASN TYR PRO ASP TYR GLN LYS SEQRES 20 A 374 ILE LEU PRO LYS GLU TYR ILE SER SER PHE THR LEU GLY SEQRES 21 A 374 LYS GLU GLU PHE LYS GLU SER ILE LYS LEU CYS SER SER SEQRES 22 A 374 LEU SER SER THR ILE LYS LEU THR LEU GLU LYS ASN ASN SEQRES 23 A 374 ALA LEU PHE GLU SER LEU ASP SER GLU HIS SER GLU THR SEQRES 24 A 374 ALA LYS THR SER VAL GLU ILE GLU LYS GLY LEU ASP ILE SEQRES 25 A 374 GLU LYS ALA PHE HIS LEU GLY VAL ASN ALA LYS PHE PHE SEQRES 26 A 374 LEU GLU ALA LEU ASN ALA LEU GLY THR THR GLN PHE VAL SEQRES 27 A 374 LEU ARG CYS ASN GLU PRO SER SER PRO PHE LEU ILE GLN SEQRES 28 A 374 GLU SER LEU ASP GLU LYS GLN SER HIS LEU ASN ALA LYS SEQRES 29 A 374 ILE SER THR LEU MET MET PRO ILE THR LEU SEQRES 1 B 374 MET LYS ILE SER VAL SER LYS ASN ASP LEU GLU ASN ALA SEQRES 2 B 374 LEU ARG TYR LEU GLN ALA PHE LEU ASP LYS LYS ASP ALA SEQRES 3 B 374 SER SER ILE ALA SER HIS ILE HIS LEU GLU VAL ILE LYS SEQRES 4 B 374 GLU LYS LEU PHE LEU LYS ALA SER ASP SER ASP ILE GLY SEQRES 5 B 374 LEU LYS SER TYR ILE PHE THR GLN SER SER ASP LYS GLU SEQRES 6 B 374 GLY VAL GLY THR ILE ASN GLY LYS LYS PHE LEU ASP ILE SEQRES 7 B 374 ILE SER CYS LEU LYS ASP SER ASN ILE ILE LEU GLU THR SEQRES 8 B 374 LYS ASP ASP SER LEU ALA ILE LYS GLN ASN LYS SER SER SEQRES 9 B 374 PHE LYS LEU PRO MET PHE ASP ALA ASP GLU PHE PRO GLU SEQRES 10 B 374 PHE PRO VAL ILE ASP PRO LYS VAL SER ILE GLU VAL ASN SEQRES 11 B 374 ALA PRO PHE LEU VAL ASP ALA PHE LYS LYS ILE ALA PRO SEQRES 12 B 374 VAL ILE GLU GLN THR SER HIS LYS ARG GLU LEU ALA GLY SEQRES 13 B 374 ILE LEU MET GLN PHE ASP GLN LYS HIS GLN THR LEU SER SEQRES 14 B 374 VAL VAL GLY THR ASP THR LYS ARG LEU SER TYR THR GLN SEQRES 15 B 374 LEU GLU LYS ILE SER ILE HIS SER THR GLU GLU ASP ILE SEQRES 16 B 374 SER CYS ILE LEU PRO LYS ARG ALA LEU LEU GLU ILE LEU SEQRES 17 B 374 LYS LEU PHE TYR GLU ASN PHE SER PHE LYS SER ASP GLY SEQRES 18 B 374 MET LEU ALA VAL ILE GLU ASN GLU MET HIS THR PHE PHE SEQRES 19 B 374 THR LYS LEU ILE ASP GLY ASN TYR PRO ASP TYR GLN LYS SEQRES 20 B 374 ILE LEU PRO LYS GLU TYR ILE SER SER PHE THR LEU GLY SEQRES 21 B 374 LYS GLU GLU PHE LYS GLU SER ILE LYS LEU CYS SER SER SEQRES 22 B 374 LEU SER SER THR ILE LYS LEU THR LEU GLU LYS ASN ASN SEQRES 23 B 374 ALA LEU PHE GLU SER LEU ASP SER GLU HIS SER GLU THR SEQRES 24 B 374 ALA LYS THR SER VAL GLU ILE GLU LYS GLY LEU ASP ILE SEQRES 25 B 374 GLU LYS ALA PHE HIS LEU GLY VAL ASN ALA LYS PHE PHE SEQRES 26 B 374 LEU GLU ALA LEU ASN ALA LEU GLY THR THR GLN PHE VAL SEQRES 27 B 374 LEU ARG CYS ASN GLU PRO SER SER PRO PHE LEU ILE GLN SEQRES 28 B 374 GLU SER LEU ASP GLU LYS GLN SER HIS LEU ASN ALA LYS SEQRES 29 B 374 ILE SER THR LEU MET MET PRO ILE THR LEU HET 1FL A1375 18 HET 1FL B1375 18 HETNAM 1FL 5-(2,4-DIFLUOROPHENYL)-2-HYDROXY-BENZOIC ACID HETSYN 1FL DIFLUNISAL FORMUL 3 1FL 2(C13 H8 F2 O3) FORMUL 5 HOH *124(H2 O) HELIX 1 1 SER A 6 GLN A 18 1 13 HELIX 2 2 ALA A 19 LEU A 21 5 3 HELIX 3 3 SER A 28 ALA A 30 5 3 HELIX 4 4 GLY A 72 CYS A 81 1 10 HELIX 5 5 ASP A 111 PHE A 115 5 5 HELIX 6 6 PRO A 132 ALA A 142 1 11 HELIX 7 7 PRO A 143 ILE A 145 5 3 HELIX 8 8 LYS A 151 LEU A 154 5 4 HELIX 9 9 LYS A 201 PHE A 211 1 11 HELIX 10 10 ASP A 244 LEU A 249 1 6 HELIX 11 11 LYS A 261 SER A 272 1 12 HELIX 12 12 ALA A 322 ALA A 331 1 10 HELIX 13 13 SER B 6 GLN B 18 1 13 HELIX 14 14 ALA B 19 LEU B 21 5 3 HELIX 15 15 SER B 28 ALA B 30 5 3 HELIX 16 16 GLY B 72 CYS B 81 1 10 HELIX 17 17 ASP B 111 PHE B 115 5 5 HELIX 18 18 PRO B 132 ALA B 142 1 11 HELIX 19 19 PRO B 143 ILE B 145 5 3 HELIX 20 20 LYS B 151 LEU B 154 5 4 HELIX 21 21 LYS B 201 PHE B 211 1 11 HELIX 22 22 ASP B 244 ILE B 248 5 5 HELIX 23 23 LYS B 261 SER B 272 1 12 HELIX 24 24 ALA B 322 ALA B 331 1 10 SHEET 1 AA 4 LYS A 2 VAL A 5 0 SHEET 2 AA 4 ILE A 87 LYS A 92 -1 O ILE A 87 N VAL A 5 SHEET 3 AA 4 SER A 95 GLN A 100 -1 O SER A 95 N LYS A 92 SHEET 4 AA 4 SER A 103 PRO A 108 -1 O SER A 103 N GLN A 100 SHEET 1 AB 9 GLY A 66 ASN A 71 0 SHEET 2 AB 9 HIS A 32 ILE A 38 -1 O ILE A 33 N ILE A 70 SHEET 3 AB 9 LYS A 41 SER A 47 -1 O LYS A 41 N ILE A 38 SHEET 4 AB 9 ILE A 51 PHE A 58 -1 O LEU A 53 N ALA A 46 SHEET 5 AB 9 THR A 232 LYS A 236 -1 O THR A 232 N LYS A 54 SHEET 6 AB 9 LEU A 223 GLU A 227 -1 O ALA A 224 N THR A 235 SHEET 7 AB 9 PHE A 215 SER A 219 -1 O SER A 216 N GLU A 227 SHEET 8 AB 9 VAL A 125 VAL A 129 -1 O VAL A 125 N SER A 219 SHEET 9 AB 9 ILE A 188 SER A 190 -1 O HIS A 189 N SER A 126 SHEET 1 AC 8 ASP A 194 PRO A 200 0 SHEET 2 AC 8 GLY A 156 ASP A 162 -1 O ILE A 157 N LEU A 199 SHEET 3 AC 8 THR A 167 THR A 173 -1 O THR A 167 N ASP A 162 SHEET 4 AC 8 ARG A 177 LEU A 183 -1 O SER A 179 N GLY A 172 SHEET 5 AC 8 SER A 366 MET A 369 -1 O SER A 366 N TYR A 180 SHEET 6 AC 8 PHE A 348 GLU A 352 -1 O PHE A 348 N MET A 369 SHEET 7 AC 8 GLN A 336 CYS A 341 -1 O VAL A 338 N GLN A 351 SHEET 8 AC 8 SER A 255 GLY A 260 -1 O SER A 255 N CYS A 341 SHEET 1 AD 4 LYS A 301 GLU A 305 0 SHEET 2 AD 4 ASN A 286 SER A 291 -1 O ALA A 287 N VAL A 304 SHEET 3 AD 4 THR A 277 LEU A 282 -1 O LYS A 279 N GLU A 290 SHEET 4 AD 4 PHE A 316 ASN A 321 -1 O PHE A 316 N LEU A 282 SHEET 1 BA 5 SER B 61 LYS B 64 0 SHEET 2 BA 5 LYS B 2 VAL B 5 -1 O LYS B 2 N ASP B 63 SHEET 3 BA 5 ILE B 87 THR B 91 -1 O ILE B 87 N VAL B 5 SHEET 4 BA 5 SER B 95 GLN B 100 -1 O ALA B 97 N GLU B 90 SHEET 5 BA 5 SER B 103 PRO B 108 -1 O SER B 103 N GLN B 100 SHEET 1 BB 9 GLY B 66 ASN B 71 0 SHEET 2 BB 9 HIS B 32 ILE B 38 -1 O ILE B 33 N ILE B 70 SHEET 3 BB 9 LYS B 41 SER B 47 -1 O LYS B 41 N ILE B 38 SHEET 4 BB 9 ILE B 51 PHE B 58 -1 O LEU B 53 N ALA B 46 SHEET 5 BB 9 HIS B 231 LYS B 236 -1 O THR B 232 N LYS B 54 SHEET 6 BB 9 LEU B 223 GLU B 227 -1 O ALA B 224 N THR B 235 SHEET 7 BB 9 PHE B 215 SER B 219 -1 O SER B 216 N GLU B 227 SHEET 8 BB 9 VAL B 125 VAL B 129 -1 O VAL B 125 N SER B 219 SHEET 9 BB 9 HIS B 189 SER B 190 -1 O HIS B 189 N SER B 126 SHEET 1 BC 8 ASP B 194 PRO B 200 0 SHEET 2 BC 8 GLY B 156 ASP B 162 -1 O ILE B 157 N LEU B 199 SHEET 3 BC 8 THR B 167 THR B 173 -1 O THR B 167 N ASP B 162 SHEET 4 BC 8 ARG B 177 LEU B 183 -1 O SER B 179 N GLY B 172 SHEET 5 BC 8 SER B 366 MET B 369 -1 O SER B 366 N TYR B 180 SHEET 6 BC 8 PHE B 348 GLU B 352 -1 O PHE B 348 N MET B 369 SHEET 7 BC 8 GLN B 336 CYS B 341 -1 O VAL B 338 N GLN B 351 SHEET 8 BC 8 SER B 255 GLY B 260 -1 O SER B 255 N CYS B 341 SHEET 1 BD 4 LYS B 301 GLU B 305 0 SHEET 2 BD 4 ASN B 286 SER B 291 -1 O ALA B 287 N VAL B 304 SHEET 3 BD 4 THR B 277 LEU B 282 -1 O LYS B 279 N GLU B 290 SHEET 4 BD 4 PHE B 316 ASN B 321 -1 O PHE B 316 N LEU B 282 SITE 1 AC1 10 THR B 173 THR B 175 LYS B 176 ARG B 177 SITE 2 AC1 10 LEU B 178 ILE B 248 PRO B 347 LEU B 368 SITE 3 AC1 10 MET B 369 MET B 370 SITE 1 AC2 11 THR A 173 THR A 175 LYS A 176 ARG A 177 SITE 2 AC2 11 LEU A 178 PRO A 243 ILE A 248 PRO A 347 SITE 3 AC2 11 LEU A 368 MET A 369 MET A 370 CRYST1 82.311 66.372 89.119 90.00 115.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012149 0.000000 0.005915 0.00000 SCALE2 0.000000 0.015067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012480 0.00000