HEADER TRANSCRIPTION 06-MAY-16 5G49 TITLE CRYSTAL STRUCTURE OF THE ARABODOPSIS THALIANA HISTONE-FOLD DIMER L1L TITLE 2 NF-YC3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HISTONE-FOLD DOMAIN, RESIDUES 55-147; COMPND 5 SYNONYM: AT-L1L, ATNF-YB-6, PROTEIN LEAFY COTYLEDON 1-LIKE; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: HISTONE-FOLD DOMAIN, RESIDUES 55-148; COMPND 11 SYNONYM: ATNF-YC-3, AT-NF-YC3; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 9 ORGANISM_COMMON: THALE CRESS; SOURCE 10 ORGANISM_TAXID: 3702; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, HISTONE-FOLD DOMAIN, NF-Y, TRANSCRIPTION FACTOR, CCAAT KEYWDS 2 BOX- BINDING TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR N.GNESUTTA,D.SAAD,A.CHAVES-SANJUAN,R.MANTOVANI,M.NARDINI REVDAT 4 10-JAN-24 5G49 1 REMARK LINK REVDAT 3 12-APR-17 5G49 1 JRNL REVDAT 2 15-MAR-17 5G49 1 JRNL REVDAT 1 07-DEC-16 5G49 0 JRNL AUTH N.GNESUTTA,D.SAAD,A.CHAVES-SANJUAN,R.MANTOVANI,M.NARDINI JRNL TITL CRYSTAL STRUCTURE OF THE ARABIDOPSIS THALIANA L1L/NF-YC3 JRNL TITL 2 HISTONE-FOLD DIMER REVEALS SPECIFICITIES OF THE LEC1 FAMILY JRNL TITL 3 OF NF-Y SUBUNITS IN PLANTS. JRNL REF MOL PLANT V. 10 645 2017 JRNL REFN ESSN 1752-9867 JRNL PMID 27871811 JRNL DOI 10.1016/J.MOLP.2016.11.006 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.190 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8519 - 4.5981 1.00 2749 141 0.1529 0.2030 REMARK 3 2 4.5981 - 3.6504 1.00 2726 144 0.1287 0.1583 REMARK 3 3 3.6504 - 3.1892 1.00 2719 176 0.1541 0.1862 REMARK 3 4 3.1892 - 2.8977 1.00 2753 133 0.1846 0.2325 REMARK 3 5 2.8977 - 2.6900 1.00 2730 128 0.1855 0.2287 REMARK 3 6 2.6900 - 2.5314 1.00 2760 110 0.1922 0.2173 REMARK 3 7 2.5314 - 2.4047 0.99 2735 146 0.2066 0.2393 REMARK 3 8 2.4047 - 2.3000 0.98 2707 132 0.2165 0.2745 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1629 REMARK 3 ANGLE : 0.939 2192 REMARK 3 CHIRALITY : 0.054 245 REMARK 3 PLANARITY : 0.005 285 REMARK 3 DIHEDRAL : 18.907 1013 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4499 -20.7855 -0.0118 REMARK 3 T TENSOR REMARK 3 T11: 0.5166 T22: 0.4922 REMARK 3 T33: 0.4574 T12: -0.1388 REMARK 3 T13: 0.0281 T23: 0.0565 REMARK 3 L TENSOR REMARK 3 L11: 1.1650 L22: 0.7317 REMARK 3 L33: 0.3366 L12: 0.1505 REMARK 3 L13: 0.3553 L23: -0.3561 REMARK 3 S TENSOR REMARK 3 S11: 0.4782 S12: 0.4229 S13: 0.2597 REMARK 3 S21: -0.0593 S22: -0.3694 S23: -0.0057 REMARK 3 S31: -0.3956 S32: -0.4460 S33: 0.0065 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7997 -28.5009 2.6701 REMARK 3 T TENSOR REMARK 3 T11: 0.5665 T22: 0.3400 REMARK 3 T33: 0.5239 T12: 0.0184 REMARK 3 T13: -0.0745 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 1.3783 L22: 0.5115 REMARK 3 L33: 1.1581 L12: 0.3121 REMARK 3 L13: 0.9119 L23: -0.1710 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: 0.2507 S13: -1.1375 REMARK 3 S21: -0.1330 S22: 0.3237 S23: -0.2138 REMARK 3 S31: 0.9345 S32: 0.3637 S33: 0.0933 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2806 -11.7541 -4.0053 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.3735 REMARK 3 T33: 0.3626 T12: 0.0113 REMARK 3 T13: 0.0219 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.1239 L22: 1.2697 REMARK 3 L33: 1.7991 L12: 0.2612 REMARK 3 L13: 1.0489 L23: 1.2797 REMARK 3 S TENSOR REMARK 3 S11: -0.1241 S12: -0.0999 S13: -0.1092 REMARK 3 S21: 0.2481 S22: 0.1654 S23: 0.3449 REMARK 3 S31: -0.2482 S32: -0.5189 S33: 0.0048 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6876 -8.2569 -14.7620 REMARK 3 T TENSOR REMARK 3 T11: 0.2796 T22: 0.3967 REMARK 3 T33: 0.2720 T12: -0.0102 REMARK 3 T13: 0.0062 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 0.8970 L22: 3.6515 REMARK 3 L33: 2.7132 L12: -0.1416 REMARK 3 L13: 0.8452 L23: 1.6310 REMARK 3 S TENSOR REMARK 3 S11: 0.1134 S12: 0.2033 S13: 0.0498 REMARK 3 S21: -0.2206 S22: -0.0391 S23: -0.1683 REMARK 3 S31: -0.1493 S32: 0.3249 S33: 0.0011 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4051 -24.5809 -10.6269 REMARK 3 T TENSOR REMARK 3 T11: 0.6691 T22: 0.6029 REMARK 3 T33: 0.6387 T12: 0.0995 REMARK 3 T13: -0.1099 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 1.0283 L22: 0.9061 REMARK 3 L33: 0.9565 L12: -0.4196 REMARK 3 L13: -0.4116 L23: -0.5976 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.2688 S13: -0.7864 REMARK 3 S21: -0.1709 S22: 0.2065 S23: -0.1856 REMARK 3 S31: 1.0050 S32: 0.3907 S33: -0.0038 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3763 -13.5509 -14.1187 REMARK 3 T TENSOR REMARK 3 T11: 0.4053 T22: 0.4640 REMARK 3 T33: 0.4757 T12: -0.0409 REMARK 3 T13: -0.0448 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.7661 L22: 0.4318 REMARK 3 L33: 1.2242 L12: 0.1486 REMARK 3 L13: -0.1962 L23: 0.0910 REMARK 3 S TENSOR REMARK 3 S11: 0.1973 S12: 0.0156 S13: 0.3450 REMARK 3 S21: -0.1850 S22: -0.1007 S23: 0.4712 REMARK 3 S31: -0.0469 S32: -0.5817 S33: 0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6636 -19.1041 3.0510 REMARK 3 T TENSOR REMARK 3 T11: 0.3266 T22: 0.3565 REMARK 3 T33: 0.3667 T12: 0.0040 REMARK 3 T13: -0.0289 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 1.3715 L22: 2.4196 REMARK 3 L33: 0.2880 L12: -0.2409 REMARK 3 L13: -0.3026 L23: -0.7589 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.2386 S13: -0.2468 REMARK 3 S21: 0.3646 S22: -0.0191 S23: -0.0904 REMARK 3 S31: 0.0730 S32: 0.6243 S33: 0.0006 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5538 -14.3273 11.9065 REMARK 3 T TENSOR REMARK 3 T11: 0.5090 T22: 0.6420 REMARK 3 T33: 0.3187 T12: -0.0471 REMARK 3 T13: -0.0120 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 0.0618 L22: 1.1007 REMARK 3 L33: 0.4631 L12: -0.1194 REMARK 3 L13: -0.0254 L23: 0.6599 REMARK 3 S TENSOR REMARK 3 S11: 0.5066 S12: -0.6785 S13: 0.1639 REMARK 3 S21: 1.1430 S22: -0.7163 S23: 0.5325 REMARK 3 S31: -0.6460 S32: -0.1067 S33: -0.0164 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 108 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6007 -8.9531 5.7760 REMARK 3 T TENSOR REMARK 3 T11: 0.4144 T22: 0.4273 REMARK 3 T33: 0.4129 T12: -0.0301 REMARK 3 T13: 0.0636 T23: 0.0681 REMARK 3 L TENSOR REMARK 3 L11: 0.2168 L22: 0.5201 REMARK 3 L33: 0.3559 L12: -0.1106 REMARK 3 L13: 0.1248 L23: 0.2568 REMARK 3 S TENSOR REMARK 3 S11: -0.0900 S12: -1.0035 S13: -0.0889 REMARK 3 S21: 0.7396 S22: 0.1010 S23: 0.3535 REMARK 3 S31: 0.1498 S32: -0.3113 S33: -0.0043 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5G49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1290066776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12288 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 52.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CSR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 8,000, 100 MM HEPES-NAOH REMARK 280 PH 7.5, 200 MM CALCIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.99900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.99900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.17200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.84550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.17200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.84550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.99900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.17200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.84550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.99900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.17200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.84550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2023 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 62 106.68 -166.11 REMARK 500 THR B 63 138.45 -33.23 REMARK 500 THR B 64 -10.27 95.13 REMARK 500 LYS B 67 -165.34 -120.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 61 0.23 SIDE CHAIN REMARK 500 ARG A 70 0.09 SIDE CHAIN REMARK 500 ARG B 111 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2017 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A2020 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B2012 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1149 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2055 O REMARK 620 2 ASP B 137 OD2 76.9 REMARK 620 3 HOH B2032 O 89.5 85.8 REMARK 620 4 HOH B2033 O 86.1 71.6 157.3 REMARK 620 5 HOH B2037 O 170.7 95.0 94.4 87.0 REMARK 620 6 HOH B2038 O 120.7 117.6 144.2 53.3 58.9 REMARK 620 7 HOH B2039 O 82.9 157.1 83.6 117.8 105.9 81.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1152 DBREF 5G49 A 55 147 UNP Q84W66 NFYB6_ARATH 55 147 DBREF 5G49 B 55 148 UNP Q9ZVL3 NFYC3_ARATH 55 148 SEQADV 5G49 GLY A 51 UNP Q84W66 EXPRESSION TAG SEQADV 5G49 SER A 52 UNP Q84W66 EXPRESSION TAG SEQADV 5G49 HIS A 53 UNP Q84W66 EXPRESSION TAG SEQADV 5G49 MET A 54 UNP Q84W66 EXPRESSION TAG SEQADV 5G49 MET B 54 UNP Q9ZVL3 EXPRESSION TAG SEQRES 1 A 97 GLY SER HIS MET THR VAL ARG GLU GLN ASP ARG PHE MET SEQRES 2 A 97 PRO ILE ALA ASN VAL ILE ARG ILE MET ARG ARG ILE LEU SEQRES 3 A 97 PRO ALA HIS ALA LYS ILE SER ASP ASP SER LYS GLU THR SEQRES 4 A 97 ILE GLN GLU CYS VAL SER GLU TYR ILE SER PHE ILE THR SEQRES 5 A 97 GLY GLU ALA ASN GLU ARG CYS GLN ARG GLU GLN ARG LYS SEQRES 6 A 97 THR ILE THR ALA GLU ASP VAL LEU TRP ALA MET SER LYS SEQRES 7 A 97 LEU GLY PHE ASP ASP TYR ILE GLU PRO LEU THR LEU TYR SEQRES 8 A 97 LEU HIS ARG TYR ARG GLU SEQRES 1 B 95 MET THR GLN PHE LYS GLU ILE GLU LYS THR THR ASP PHE SEQRES 2 B 95 LYS ASN HIS SER LEU PRO LEU ALA ARG ILE LYS LYS ILE SEQRES 3 B 95 MET LYS ALA ASP GLU ASP VAL ARG MET ILE SER ALA GLU SEQRES 4 B 95 ALA PRO VAL VAL PHE ALA ARG ALA CYS GLU MET PHE ILE SEQRES 5 B 95 LEU GLU LEU THR LEU ARG SER TRP ASN HIS THR GLU GLU SEQRES 6 B 95 ASN LYS ARG ARG THR LEU GLN LYS ASN ASP ILE ALA ALA SEQRES 7 B 95 ALA VAL THR ARG THR ASP ILE PHE ASP PHE LEU VAL ASP SEQRES 8 B 95 ILE VAL PRO ARG HET CA B1149 1 HET ACT B1150 4 HET ACT B1151 4 HET ACT B1152 4 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION FORMUL 3 CA CA 2+ FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 7 HOH *109(H2 O) HELIX 1 1 GLU A 58 PHE A 62 5 5 HELIX 2 2 PRO A 64 ILE A 75 1 12 HELIX 3 3 SER A 83 GLN A 113 1 31 HELIX 4 4 THR A 118 LEU A 129 1 12 HELIX 5 5 PHE A 131 ASP A 133 5 3 HELIX 6 6 TYR A 134 GLU A 147 1 14 HELIX 7 7 PRO B 72 ALA B 82 1 11 HELIX 8 8 ALA B 91 ASN B 119 1 29 HELIX 9 9 GLN B 125 THR B 136 1 12 HELIX 10 10 ASP B 137 VAL B 143 5 7 SHEET 1 AA 2 LYS A 81 ILE A 82 0 SHEET 2 AA 2 THR B 123 LEU B 124 1 N LEU B 124 O LYS A 81 SHEET 1 AB 2 THR A 116 ILE A 117 0 SHEET 2 AB 2 MET B 88 ILE B 89 1 O MET B 88 N ILE A 117 LINK O HOH A2055 CA CA B1149 4555 1555 2.70 LINK OD2 ASP B 137 CA CA B1149 1555 1555 2.66 LINK CA CA B1149 O HOH B2032 1555 1555 2.68 LINK CA CA B1149 O HOH B2033 1555 1555 2.63 LINK CA CA B1149 O HOH B2037 1555 1555 2.34 LINK CA CA B1149 O HOH B2038 1555 1555 3.11 LINK CA CA B1149 O HOH B2039 1555 1555 2.46 SITE 1 AC1 6 HOH A2055 ASP B 137 HOH B2032 HOH B2033 SITE 2 AC1 6 HOH B2037 HOH B2039 SITE 1 AC2 4 TYR A 141 LYS B 67 ASN B 68 HIS B 69 SITE 1 AC3 2 HOH A2065 GLU B 59 SITE 1 AC4 4 SER A 83 ASP A 85 GLN B 125 LYS B 126 CRYST1 68.344 81.691 95.998 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014632 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010417 0.00000