HEADER HYDROLASE 09-MAY-16 5G4C TITLE HUMAN SIRT2 CATALYSE SHORT CHAIN FATTY ACYL LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 34-356; COMPND 5 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 2, SIR2-LIKE PROTEIN 2; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SIRT2; COMPND 10 CHAIN: E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT2, SIR2L, SIR2L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-SUMO; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PET28-SUMO KEYWDS HYDROLASE, SIRTUIN CLASS I, HDACS, NAD DEPENDENT, ADPR, ACYL EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG REVDAT 3 10-JAN-24 5G4C 1 REMARK LINK REVDAT 2 24-APR-19 5G4C 1 REMARK SEQRES HETNAM LINK REVDAT 1 03-MAY-17 5G4C 0 JRNL AUTH J.JIN,B.HE,X.ZHANG,H.LIN,Y.WANG JRNL TITL SIRT2 REVERSES 4-OXONONANOYL LYSINE MODIFICATION ON JRNL TITL 2 HISTONES. JRNL REF J. AM. CHEM. SOC. V. 138 12304 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27610633 JRNL DOI 10.1021/JACS.6B04977 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 40356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5G4C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1290066801. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40356 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21800 REMARK 200 R SYM FOR SHELL (I) : 0.42600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3ZGO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8K, 0.1 M HEPES, PH 7.5, 5% REMARK 280 ISOPROPANOL, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 58.65500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 34 REMARK 465 GLU A 35 REMARK 465 ALA A 36 REMARK 465 ASP A 37 REMARK 465 MET A 38 REMARK 465 ASP A 39 REMARK 465 PHE A 40 REMARK 465 LEU A 41 REMARK 465 ARG A 42 REMARK 465 ASN A 43 REMARK 465 LEU A 44 REMARK 465 PHE A 45 REMARK 465 SER A 46 REMARK 465 GLN A 47 REMARK 465 THR A 48 REMARK 465 LEU A 49 REMARK 465 SER A 50 REMARK 465 LEU A 51 REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 SER A 100 REMARK 465 SER A 293 REMARK 465 ASP A 294 REMARK 465 PRO A 295 REMARK 465 PHE A 296 REMARK 465 LEU A 297 REMARK 465 GLY A 298 REMARK 465 MET A 299 REMARK 465 ILE A 300 REMARK 465 MET A 301 REMARK 465 GLY A 302 REMARK 465 LEU A 303 REMARK 465 GLY A 304 REMARK 465 SER A 356 REMARK 465 GLY B 34 REMARK 465 GLU B 35 REMARK 465 ALA B 36 REMARK 465 ASP B 37 REMARK 465 MET B 38 REMARK 465 ASP B 39 REMARK 465 PHE B 40 REMARK 465 LEU B 41 REMARK 465 ARG B 42 REMARK 465 ASN B 43 REMARK 465 LEU B 44 REMARK 465 PHE B 45 REMARK 465 SER B 46 REMARK 465 GLN B 47 REMARK 465 THR B 48 REMARK 465 LEU B 49 REMARK 465 SER B 50 REMARK 465 LEU B 51 REMARK 465 GLY B 52 REMARK 465 SER B 53 REMARK 465 TYR B 139 REMARK 465 ASP B 294 REMARK 465 PRO B 295 REMARK 465 PHE B 296 REMARK 465 LEU B 297 REMARK 465 GLY B 298 REMARK 465 MET B 299 REMARK 465 ILE B 300 REMARK 465 MET B 301 REMARK 465 GLY B 302 REMARK 465 LEU B 303 REMARK 465 GLY B 304 REMARK 465 SER B 356 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 120 O HOH A 2038 1.90 REMARK 500 O HOH A 2062 O HOH A 2145 1.94 REMARK 500 O HOH B 2057 O HOH B 2132 1.95 REMARK 500 O HOH A 2033 O HOH A 2071 1.95 REMARK 500 O HOH B 2030 O HOH B 2059 2.00 REMARK 500 O HOH B 2048 O HOH B 2049 2.04 REMARK 500 O HOH B 2146 O HOH B 2147 2.04 REMARK 500 O HOH B 2107 O HOH B 2108 2.06 REMARK 500 O HOH A 2050 O HOH A 2119 2.08 REMARK 500 O HOH A 2059 O HOH A 2135 2.12 REMARK 500 O HOH A 2021 O HOH A 2026 2.16 REMARK 500 NE2 GLN A 225 O HOH A 2102 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2019 O HOH B 2033 1556 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 106 36.99 -142.24 REMARK 500 ASP A 223 -65.92 -96.24 REMARK 500 ASP A 231 41.17 -73.57 REMARK 500 TYR A 315 -11.96 -145.33 REMARK 500 ARG A 316 -9.14 -148.75 REMARK 500 SER B 100 -46.15 66.39 REMARK 500 ASN B 106 34.06 -140.58 REMARK 500 ASP B 223 -66.90 -93.82 REMARK 500 ASP B 231 41.05 -74.06 REMARK 500 TYR B 315 -11.59 -144.69 REMARK 500 ARG B 316 -9.34 -148.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2045 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B2035 DISTANCE = 6.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1356 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 200 SG 119.3 REMARK 620 3 CYS A 221 SG 115.4 109.9 REMARK 620 4 CYS A 224 SG 86.0 113.5 110.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CNA B 1356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CNA A 1357 DBREF 5G4C A 34 356 UNP Q8IXJ6 SIR2_HUMAN 34 356 DBREF 5G4C B 34 356 UNP Q8IXJ6 SIR2_HUMAN 34 356 DBREF 5G4C E 1 5 PDB 5G4C 5G4C 1 5 DBREF 5G4C F 1 5 PDB 5G4C 5G4C 1 5 SEQRES 1 A 323 GLY GLU ALA ASP MET ASP PHE LEU ARG ASN LEU PHE SER SEQRES 2 A 323 GLN THR LEU SER LEU GLY SER GLN LYS GLU ARG LEU LEU SEQRES 3 A 323 ASP GLU LEU THR LEU GLU GLY VAL ALA ARG TYR MET GLN SEQRES 4 A 323 SER GLU ARG CYS ARG ARG VAL ILE CYS LEU VAL GLY ALA SEQRES 5 A 323 GLY ILE SER THR SER ALA GLY ILE PRO ASP PHE ARG SER SEQRES 6 A 323 PRO SER THR GLY LEU TYR ASP ASN LEU GLU LYS TYR HIS SEQRES 7 A 323 LEU PRO TYR PRO GLU ALA ILE PHE GLU ILE SER TYR PHE SEQRES 8 A 323 LYS LYS HIS PRO GLU PRO PHE PHE ALA LEU ALA LYS GLU SEQRES 9 A 323 LEU TYR PRO GLY GLN PHE LYS PRO THR ILE CYS HIS TYR SEQRES 10 A 323 PHE MET ARG LEU LEU LYS ASP LYS GLY LEU LEU LEU ARG SEQRES 11 A 323 CYS TYR THR GLN ASN ILE ASP THR LEU GLU ARG ILE ALA SEQRES 12 A 323 GLY LEU GLU GLN GLU ASP LEU VAL GLU ALA HIS GLY THR SEQRES 13 A 323 PHE TYR THR SER HIS CYS VAL SER ALA SER CYS ARG HIS SEQRES 14 A 323 GLU TYR PRO LEU SER TRP MET LYS GLU LYS ILE PHE SER SEQRES 15 A 323 GLU VAL THR PRO LYS CYS GLU ASP CYS GLN SER LEU VAL SEQRES 16 A 323 LYS PRO ASP ILE VAL PHE PHE GLY GLU SER LEU PRO ALA SEQRES 17 A 323 ARG PHE PHE SER CYS MET GLN SER ASP PHE LEU LYS VAL SEQRES 18 A 323 ASP LEU LEU LEU VAL MET GLY THR SER LEU GLN VAL GLN SEQRES 19 A 323 PRO PHE ALA SER LEU ILE SER LYS ALA PRO LEU SER THR SEQRES 20 A 323 PRO ARG LEU LEU ILE ASN LYS GLU LYS ALA GLY GLN SER SEQRES 21 A 323 ASP PRO PHE LEU GLY MET ILE MET GLY LEU GLY GLY GLY SEQRES 22 A 323 MET ASP PHE ASP SER LYS LYS ALA TYR ARG ASP VAL ALA SEQRES 23 A 323 TRP LEU GLY GLU CYS ASP GLN GLY CYS LEU ALA LEU ALA SEQRES 24 A 323 GLU LEU LEU GLY TRP LYS LYS GLU LEU GLU ASP LEU VAL SEQRES 25 A 323 ARG ARG GLU HIS ALA SER ILE ASP ALA GLN SER SEQRES 1 B 323 GLY GLU ALA ASP MET ASP PHE LEU ARG ASN LEU PHE SER SEQRES 2 B 323 GLN THR LEU SER LEU GLY SER GLN LYS GLU ARG LEU LEU SEQRES 3 B 323 ASP GLU LEU THR LEU GLU GLY VAL ALA ARG TYR MET GLN SEQRES 4 B 323 SER GLU ARG CYS ARG ARG VAL ILE CYS LEU VAL GLY ALA SEQRES 5 B 323 GLY ILE SER THR SER ALA GLY ILE PRO ASP PHE ARG SER SEQRES 6 B 323 PRO SER THR GLY LEU TYR ASP ASN LEU GLU LYS TYR HIS SEQRES 7 B 323 LEU PRO TYR PRO GLU ALA ILE PHE GLU ILE SER TYR PHE SEQRES 8 B 323 LYS LYS HIS PRO GLU PRO PHE PHE ALA LEU ALA LYS GLU SEQRES 9 B 323 LEU TYR PRO GLY GLN PHE LYS PRO THR ILE CYS HIS TYR SEQRES 10 B 323 PHE MET ARG LEU LEU LYS ASP LYS GLY LEU LEU LEU ARG SEQRES 11 B 323 CYS TYR THR GLN ASN ILE ASP THR LEU GLU ARG ILE ALA SEQRES 12 B 323 GLY LEU GLU GLN GLU ASP LEU VAL GLU ALA HIS GLY THR SEQRES 13 B 323 PHE TYR THR SER HIS CYS VAL SER ALA SER CYS ARG HIS SEQRES 14 B 323 GLU TYR PRO LEU SER TRP MET LYS GLU LYS ILE PHE SER SEQRES 15 B 323 GLU VAL THR PRO LYS CYS GLU ASP CYS GLN SER LEU VAL SEQRES 16 B 323 LYS PRO ASP ILE VAL PHE PHE GLY GLU SER LEU PRO ALA SEQRES 17 B 323 ARG PHE PHE SER CYS MET GLN SER ASP PHE LEU LYS VAL SEQRES 18 B 323 ASP LEU LEU LEU VAL MET GLY THR SER LEU GLN VAL GLN SEQRES 19 B 323 PRO PHE ALA SER LEU ILE SER LYS ALA PRO LEU SER THR SEQRES 20 B 323 PRO ARG LEU LEU ILE ASN LYS GLU LYS ALA GLY GLN SER SEQRES 21 B 323 ASP PRO PHE LEU GLY MET ILE MET GLY LEU GLY GLY GLY SEQRES 22 B 323 MET ASP PHE ASP SER LYS LYS ALA TYR ARG ASP VAL ALA SEQRES 23 B 323 TRP LEU GLY GLU CYS ASP GLN GLY CYS LEU ALA LEU ALA SEQRES 24 B 323 GLU LEU LEU GLY TRP LYS LYS GLU LEU GLU ASP LEU VAL SEQRES 25 B 323 ARG ARG GLU HIS ALA SER ILE ASP ALA GLN SER SEQRES 1 E 5 ARG ALA ALA 6G4 THR SEQRES 1 F 5 ARG ALA ALA 6G4 THR MODRES 5G4C 6G4 E 4 LYS 4-OXONONANOYL)LYSINE MODRES 5G4C 6G4 F 4 LYS 4-OXONONANOYL)LYSINE HET 6G4 E 4 20 HET 6G4 F 4 20 HET ZN A1356 1 HET CNA A1357 44 HET CNA B1356 44 HETNAM 6G4 4-OXONONANOYL LYSINE HETNAM ZN ZINC ION HETNAM CNA CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETSYN 6G4 NEPSILON FORMUL 3 6G4 2(C15 H28 N2 O4) FORMUL 5 ZN ZN 2+ FORMUL 6 CNA 2(C22 H30 N7 O13 P2 1+) FORMUL 8 HOH *326(H2 O) HELIX 1 1 THR A 63 GLN A 72 1 10 HELIX 2 2 ALA A 85 GLY A 92 5 8 HELIX 3 3 GLY A 102 ASN A 106 5 5 HELIX 4 4 LEU A 107 HIS A 111 5 5 HELIX 5 5 TYR A 114 PHE A 119 5 6 HELIX 6 6 GLU A 120 HIS A 127 1 8 HELIX 7 7 PRO A 128 TYR A 139 1 12 HELIX 8 8 THR A 146 LYS A 158 1 13 HELIX 9 9 THR A 171 ALA A 176 1 6 HELIX 10 10 GLU A 179 GLU A 181 5 3 HELIX 11 11 LEU A 206 SER A 215 1 10 HELIX 12 12 PRO A 240 PHE A 251 1 12 HELIX 13 13 PHE A 269 LYS A 275 5 7 HELIX 14 14 GLU A 323 LEU A 335 1 13 HELIX 15 15 TRP A 337 GLN A 355 1 19 HELIX 16 16 THR B 63 SER B 73 1 11 HELIX 17 17 ALA B 85 GLY B 92 5 8 HELIX 18 18 GLY B 102 ASN B 106 5 5 HELIX 19 19 LEU B 107 HIS B 111 5 5 HELIX 20 20 TYR B 114 PHE B 119 5 6 HELIX 21 21 GLU B 120 HIS B 127 1 8 HELIX 22 22 PRO B 128 LEU B 138 1 11 HELIX 23 23 THR B 146 LYS B 158 1 13 HELIX 24 24 THR B 171 ALA B 176 1 6 HELIX 25 25 PRO B 205 SER B 215 1 11 HELIX 26 26 PRO B 240 PHE B 251 1 12 HELIX 27 27 PHE B 269 ALA B 276 5 8 HELIX 28 28 GLU B 323 LEU B 335 1 13 HELIX 29 29 TRP B 337 GLN B 355 1 19 SHEET 1 AA 6 LEU A 183 GLU A 185 0 SHEET 2 AA 6 LEU A 161 THR A 166 1 O CYS A 164 N VAL A 184 SHEET 3 AA 6 VAL A 79 VAL A 83 1 O VAL A 79 N LEU A 162 SHEET 4 AA 6 LEU A 256 MET A 260 1 O LEU A 256 N ILE A 80 SHEET 5 AA 6 ARG A 282 ASN A 286 1 O LEU A 283 N VAL A 259 SHEET 6 AA 6 ASP A 317 LEU A 321 1 O VAL A 318 N LEU A 284 SHEET 1 AB 3 GLU A 203 PRO A 205 0 SHEET 2 AB 3 GLY A 188 CYS A 195 -1 O SER A 193 N TYR A 204 SHEET 3 AB 3 VAL A 228 ILE A 232 -1 O LYS A 229 N HIS A 194 SHEET 1 BA 6 LEU B 183 GLU B 185 0 SHEET 2 BA 6 LEU B 161 THR B 166 1 O CYS B 164 N VAL B 184 SHEET 3 BA 6 VAL B 79 VAL B 83 1 O VAL B 79 N LEU B 162 SHEET 4 BA 6 LEU B 256 MET B 260 1 O LEU B 256 N ILE B 80 SHEET 5 BA 6 ARG B 282 ASN B 286 1 O LEU B 283 N VAL B 259 SHEET 6 BA 6 ASP B 317 LEU B 321 1 O VAL B 318 N LEU B 284 SHEET 1 BB 3 GLU B 203 TYR B 204 0 SHEET 2 BB 3 GLY B 188 CYS B 195 -1 O SER B 193 N TYR B 204 SHEET 3 BB 3 VAL B 228 ILE B 232 -1 O LYS B 229 N HIS B 194 LINK C ALA E 3 N 6G4 E 4 1555 1555 1.33 LINK C 6G4 E 4 N THR E 5 1555 1555 1.33 LINK C ALA F 3 N 6G4 F 4 1555 1555 1.33 LINK O1 6G4 F 4 N THR F 5 1555 1555 1.75 LINK C 6G4 F 4 N THR F 5 1555 1555 1.33 LINK SG CYS A 195 ZN ZN A1356 1555 1555 2.53 LINK SG CYS A 200 ZN ZN A1356 1555 1555 2.35 LINK SG CYS A 221 ZN ZN A1356 1555 1555 2.43 LINK SG CYS A 224 ZN ZN A1356 1555 1555 2.37 CISPEP 1 GLN A 267 PRO A 268 0 1.58 CISPEP 2 PRO B 140 GLY B 141 0 -3.29 CISPEP 3 GLN B 267 PRO B 268 0 2.49 SITE 1 AC1 4 CYS A 195 CYS A 200 CYS A 221 CYS A 224 SITE 1 AC2 28 GLY B 84 ALA B 85 GLY B 86 THR B 89 SITE 2 AC2 28 PRO B 94 ASP B 95 PHE B 96 ARG B 97 SITE 3 AC2 28 GLN B 167 ASN B 168 ILE B 169 ASP B 170 SITE 4 AC2 28 HIS B 187 GLY B 261 THR B 262 SER B 263 SITE 5 AC2 28 VAL B 266 ASN B 286 LYS B 287 GLU B 288 SITE 6 AC2 28 GLY B 322 GLU B 323 CYS B 324 HOH B2019 SITE 7 AC2 28 HOH B2027 HOH B2071 HOH B2164 6G4 E 4 SITE 1 AC3 26 GLY A 84 ALA A 85 GLY A 86 THR A 89 SITE 2 AC3 26 PRO A 94 ASP A 95 PHE A 96 ARG A 97 SITE 3 AC3 26 GLN A 167 ASN A 168 ILE A 169 ASP A 170 SITE 4 AC3 26 HIS A 187 GLY A 261 THR A 262 SER A 263 SITE 5 AC3 26 ASN A 286 LYS A 287 GLU A 288 GLY A 322 SITE 6 AC3 26 GLU A 323 CYS A 324 HOH A2022 HOH A2029 SITE 7 AC3 26 HOH A2063 6G4 F 4 CRYST1 37.341 117.310 71.346 90.00 92.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026780 0.000000 0.001240 0.00000 SCALE2 0.000000 0.008524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014031 0.00000