data_5G4S # _entry.id 5G4S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5G4S PDBE EBI-66866 WWPDB D_1290066866 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 5G4R _pdbx_database_related.content_type unspecified _pdbx_database_related.details ;BROMODOMAIN OF HUMAN BRPF1 WITH N-1,3-DIMETHYL-6- 2R-2-METHYLPIPERAZIN-1-YL-2-OXO-2,3-DIHYDRO-1H-1 ,3-BENZODIAZOL-5-YL-2-METHOXYBENZAMIDE ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5G4S _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2016-05-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Chung, C.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.id primary _citation.title 'Gsk6853, a Chemical Probe for Inhibition of the Brpf1 Bromodomain.' _citation.journal_abbrev 'Acs Med.Chem.Lett.' _citation.journal_volume 7 _citation.page_first 552 _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1948-5875 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27326325 _citation.pdbx_database_id_DOI 10.1021/ACSMEDCHEMLETT.6B00092 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bamborough, P.' 1 primary 'Barnett, H.A.' 2 primary 'Becher, I.' 3 primary 'Bird, M.J.' 4 primary 'Chung, C.' 5 primary 'Craggs, P.D.' 6 primary 'Demont, E.H.' 7 primary 'Diallo, H.' 8 primary 'Fallon, D.J.' 9 primary 'Gordon, L.J.' 10 primary 'Grandi, P.' 11 primary 'Hobbs, C.I.' 12 primary 'Hooper-Greenhill, E.' 13 primary 'Jones, E.J.' 14 primary 'Law, R.P.' 15 primary 'Le Gall, A.' 16 primary 'Lugo, D.' 17 primary 'Michon, A.' 18 primary 'Mitchell, D.J.' 19 primary 'Prinjha, R.K.' 20 primary 'Sheppard, R.J.' 21 primary 'Watson, A.J.B.' 22 primary 'Watson, R.J.' 23 # _cell.entry_id 5G4S _cell.length_a 60.530 _cell.length_b 60.530 _cell.length_c 85.140 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G4S _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PEREGRIN 13926.902 1 ? ? 'BROMODOMAIN OF BRPF1, UNP RESIDUES 624-738' ? 2 non-polymer syn 'N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-N-ethyl-2-methoxy-benzamide' 437.535 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 229 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, PROTEIN BR140,' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GQEIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLI VSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEK ; _entity_poly.pdbx_seq_one_letter_code_can ;GQEIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLI VSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 GLU n 1 4 ILE n 1 5 ALA n 1 6 MET n 1 7 GLU n 1 8 MET n 1 9 GLN n 1 10 LEU n 1 11 THR n 1 12 PRO n 1 13 PHE n 1 14 LEU n 1 15 ILE n 1 16 LEU n 1 17 LEU n 1 18 ARG n 1 19 LYS n 1 20 THR n 1 21 LEU n 1 22 GLU n 1 23 GLN n 1 24 LEU n 1 25 GLN n 1 26 GLU n 1 27 LYS n 1 28 ASP n 1 29 THR n 1 30 GLY n 1 31 ASN n 1 32 ILE n 1 33 PHE n 1 34 SER n 1 35 GLU n 1 36 PRO n 1 37 VAL n 1 38 PRO n 1 39 LEU n 1 40 SER n 1 41 GLU n 1 42 VAL n 1 43 PRO n 1 44 ASP n 1 45 TYR n 1 46 LEU n 1 47 ASP n 1 48 HIS n 1 49 ILE n 1 50 LYS n 1 51 LYS n 1 52 PRO n 1 53 MET n 1 54 ASP n 1 55 PHE n 1 56 PHE n 1 57 THR n 1 58 MET n 1 59 LYS n 1 60 GLN n 1 61 ASN n 1 62 LEU n 1 63 GLU n 1 64 ALA n 1 65 TYR n 1 66 ARG n 1 67 TYR n 1 68 LEU n 1 69 ASN n 1 70 PHE n 1 71 ASP n 1 72 ASP n 1 73 PHE n 1 74 GLU n 1 75 GLU n 1 76 ASP n 1 77 PHE n 1 78 ASN n 1 79 LEU n 1 80 ILE n 1 81 VAL n 1 82 SER n 1 83 ASN n 1 84 CYS n 1 85 LEU n 1 86 LYS n 1 87 TYR n 1 88 ASN n 1 89 ALA n 1 90 LYS n 1 91 ASP n 1 92 THR n 1 93 ILE n 1 94 PHE n 1 95 TYR n 1 96 ARG n 1 97 ALA n 1 98 ALA n 1 99 VAL n 1 100 ARG n 1 101 LEU n 1 102 ARG n 1 103 GLU n 1 104 GLN n 1 105 GLY n 1 106 GLY n 1 107 ALA n 1 108 VAL n 1 109 LEU n 1 110 ARG n 1 111 GLN n 1 112 ALA n 1 113 ARG n 1 114 ARG n 1 115 GLN n 1 116 ALA n 1 117 GLU n 1 118 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRPF1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P55201 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5G4S _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 118 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P55201 _struct_ref_seq.db_align_beg 624 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 738 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 624 _struct_ref_seq.pdbx_auth_seq_align_end 738 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5G4S GLY A 1 ? UNP P55201 ? ? 'expression tag' 621 1 1 5G4S GLN A 2 ? UNP P55201 ? ? 'expression tag' 622 2 1 5G4S GLU A 3 ? UNP P55201 ? ? 'expression tag' 623 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8VI non-polymer . 'N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-N-ethyl-2-methoxy-benzamide' ? 'C24 H31 N5 O3' 437.535 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5G4S _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_percent_sol 56.07 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M MORPHEUS BUFFER 1, PH 6.5 37.5% MPD_P1K_P3350 10% MORPHEUS NITRATE-PHOSPHATE-SULPHATE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2014-09-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type ESRF _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.97934 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5G4S _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 49.33 _reflns.d_resolution_high 1.60 _reflns.number_obs 21557 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.6 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.69 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.00 _reflns_shell.pdbx_redundancy 12.3 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5G4S _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 20440 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.33 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 99.98 _refine.ls_R_factor_obs 0.18699 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18662 _refine.ls_R_factor_R_free 0.19373 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1105 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.B_iso_mean 23.344 _refine.aniso_B[1][1] -0.15 _refine.aniso_B[2][2] -0.15 _refine.aniso_B[3][3] 0.29 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.087 _refine.pdbx_overall_ESU_R_Free 0.078 _refine.overall_SU_ML 0.053 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.848 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 957 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 229 _refine_hist.number_atoms_total 1222 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 49.33 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.019 ? 1048 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 720 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.082 1.940 ? 1418 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.852 3.000 ? 1742 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.986 5.000 ? 115 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.633 24.340 ? 53 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.709 15.000 ? 180 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.162 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.062 0.200 ? 145 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 1132 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 216 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.642 _refine_ls_shell.number_reflns_R_work 1314 _refine_ls_shell.R_factor_R_work 0.217 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.228 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5G4S _struct.title ;BROMODOMAIN OF HUMAN BRPF1 WITH N-1,3-dimethyl-6-2R-2- methylpiperazin-1-yl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl-N- ethyl-2-methoxybenzamide ; _struct.pdbx_descriptor PEREGRIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5G4S _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 4 ? MET A 8 ? ILE A 624 MET A 628 5 ? 5 HELX_P HELX_P2 2 GLN A 9 ? GLU A 26 ? GLN A 629 GLU A 646 1 ? 18 HELX_P HELX_P3 3 ASP A 44 ? ILE A 49 ? ASP A 664 ILE A 669 1 ? 6 HELX_P HELX_P4 4 ASP A 54 ? ALA A 64 ? ASP A 674 ALA A 684 1 ? 11 HELX_P HELX_P5 5 ASN A 69 ? ASN A 88 ? ASN A 689 ASN A 708 1 ? 20 HELX_P HELX_P6 6 THR A 92 ? GLU A 117 ? THR A 712 GLU A 737 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE EDO A 1800' AC2 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE 8VI A 1739' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 GLU A 75 ? GLU A 695 . ? 1_555 ? 2 AC2 14 ILE A 4 ? ILE A 624 . ? 5_545 ? 3 AC2 14 MET A 6 ? MET A 626 . ? 5_545 ? 4 AC2 14 ASN A 31 ? ASN A 651 . ? 1_555 ? 5 AC2 14 ILE A 32 ? ILE A 652 . ? 1_555 ? 6 AC2 14 GLU A 35 ? GLU A 655 . ? 7_556 ? 7 AC2 14 VAL A 37 ? VAL A 657 . ? 1_555 ? 8 AC2 14 PRO A 38 ? PRO A 658 . ? 1_555 ? 9 AC2 14 VAL A 42 ? VAL A 662 . ? 1_555 ? 10 AC2 14 PHE A 56 ? PHE A 676 . ? 7_556 ? 11 AC2 14 TYR A 87 ? TYR A 707 . ? 1_555 ? 12 AC2 14 ASN A 88 ? ASN A 708 . ? 1_555 ? 13 AC2 14 PHE A 94 ? PHE A 714 . ? 1_555 ? 14 AC2 14 HOH D . ? HOH A 2057 . ? 5_545 ? 15 AC2 14 HOH D . ? HOH A 2125 . ? 1_555 ? # _database_PDB_matrix.entry_id 5G4S _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5G4S _atom_sites.fract_transf_matrix[1][1] 0.016521 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016521 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011745 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 621 ? ? ? A . n A 1 2 GLN 2 622 ? ? ? A . n A 1 3 GLU 3 623 623 GLU GLU A . n A 1 4 ILE 4 624 624 ILE ILE A . n A 1 5 ALA 5 625 625 ALA ALA A . n A 1 6 MET 6 626 626 MET MET A . n A 1 7 GLU 7 627 627 GLU GLU A . n A 1 8 MET 8 628 628 MET MET A . n A 1 9 GLN 9 629 629 GLN GLN A . n A 1 10 LEU 10 630 630 LEU LEU A . n A 1 11 THR 11 631 631 THR THR A . n A 1 12 PRO 12 632 632 PRO PRO A . n A 1 13 PHE 13 633 633 PHE PHE A . n A 1 14 LEU 14 634 634 LEU LEU A . n A 1 15 ILE 15 635 635 ILE ILE A . n A 1 16 LEU 16 636 636 LEU LEU A . n A 1 17 LEU 17 637 637 LEU LEU A . n A 1 18 ARG 18 638 638 ARG ARG A . n A 1 19 LYS 19 639 639 LYS LYS A . n A 1 20 THR 20 640 640 THR THR A . n A 1 21 LEU 21 641 641 LEU LEU A . n A 1 22 GLU 22 642 642 GLU GLU A . n A 1 23 GLN 23 643 643 GLN GLN A . n A 1 24 LEU 24 644 644 LEU LEU A . n A 1 25 GLN 25 645 645 GLN GLN A . n A 1 26 GLU 26 646 646 GLU GLU A . n A 1 27 LYS 27 647 647 LYS LYS A . n A 1 28 ASP 28 648 648 ASP ASP A . n A 1 29 THR 29 649 649 THR THR A . n A 1 30 GLY 30 650 650 GLY GLY A . n A 1 31 ASN 31 651 651 ASN ASN A . n A 1 32 ILE 32 652 652 ILE ILE A . n A 1 33 PHE 33 653 653 PHE PHE A . n A 1 34 SER 34 654 654 SER SER A . n A 1 35 GLU 35 655 655 GLU GLU A . n A 1 36 PRO 36 656 656 PRO PRO A . n A 1 37 VAL 37 657 657 VAL VAL A . n A 1 38 PRO 38 658 658 PRO PRO A . n A 1 39 LEU 39 659 659 LEU LEU A . n A 1 40 SER 40 660 660 SER SER A . n A 1 41 GLU 41 661 661 GLU GLU A . n A 1 42 VAL 42 662 662 VAL VAL A . n A 1 43 PRO 43 663 663 PRO PRO A . n A 1 44 ASP 44 664 664 ASP ASP A . n A 1 45 TYR 45 665 665 TYR TYR A . n A 1 46 LEU 46 666 666 LEU LEU A . n A 1 47 ASP 47 667 667 ASP ASP A . n A 1 48 HIS 48 668 668 HIS HIS A . n A 1 49 ILE 49 669 669 ILE ILE A . n A 1 50 LYS 50 670 670 LYS LYS A . n A 1 51 LYS 51 671 671 LYS LYS A . n A 1 52 PRO 52 672 672 PRO PRO A . n A 1 53 MET 53 673 673 MET MET A . n A 1 54 ASP 54 674 674 ASP ASP A . n A 1 55 PHE 55 675 675 PHE PHE A . n A 1 56 PHE 56 676 676 PHE PHE A . n A 1 57 THR 57 677 677 THR THR A . n A 1 58 MET 58 678 678 MET MET A . n A 1 59 LYS 59 679 679 LYS LYS A . n A 1 60 GLN 60 680 680 GLN GLN A . n A 1 61 ASN 61 681 681 ASN ASN A . n A 1 62 LEU 62 682 682 LEU LEU A . n A 1 63 GLU 63 683 683 GLU GLU A . n A 1 64 ALA 64 684 684 ALA ALA A . n A 1 65 TYR 65 685 685 TYR TYR A . n A 1 66 ARG 66 686 686 ARG ARG A . n A 1 67 TYR 67 687 687 TYR TYR A . n A 1 68 LEU 68 688 688 LEU LEU A . n A 1 69 ASN 69 689 689 ASN ASN A . n A 1 70 PHE 70 690 690 PHE PHE A . n A 1 71 ASP 71 691 691 ASP ASP A . n A 1 72 ASP 72 692 692 ASP ASP A . n A 1 73 PHE 73 693 693 PHE PHE A . n A 1 74 GLU 74 694 694 GLU GLU A . n A 1 75 GLU 75 695 695 GLU GLU A . n A 1 76 ASP 76 696 696 ASP ASP A . n A 1 77 PHE 77 697 697 PHE PHE A . n A 1 78 ASN 78 698 698 ASN ASN A . n A 1 79 LEU 79 699 699 LEU LEU A . n A 1 80 ILE 80 700 700 ILE ILE A . n A 1 81 VAL 81 701 701 VAL VAL A . n A 1 82 SER 82 702 702 SER SER A . n A 1 83 ASN 83 703 703 ASN ASN A . n A 1 84 CYS 84 704 704 CYS CYS A . n A 1 85 LEU 85 705 705 LEU LEU A . n A 1 86 LYS 86 706 706 LYS LYS A . n A 1 87 TYR 87 707 707 TYR TYR A . n A 1 88 ASN 88 708 708 ASN ASN A . n A 1 89 ALA 89 709 709 ALA ALA A . n A 1 90 LYS 90 710 710 LYS LYS A . n A 1 91 ASP 91 711 711 ASP ASP A . n A 1 92 THR 92 712 712 THR THR A . n A 1 93 ILE 93 713 713 ILE ILE A . n A 1 94 PHE 94 714 714 PHE PHE A . n A 1 95 TYR 95 715 715 TYR TYR A . n A 1 96 ARG 96 716 716 ARG ARG A . n A 1 97 ALA 97 717 717 ALA ALA A . n A 1 98 ALA 98 718 718 ALA ALA A . n A 1 99 VAL 99 719 719 VAL VAL A . n A 1 100 ARG 100 720 720 ARG ARG A . n A 1 101 LEU 101 721 721 LEU LEU A . n A 1 102 ARG 102 722 722 ARG ARG A . n A 1 103 GLU 103 723 723 GLU GLU A . n A 1 104 GLN 104 724 724 GLN GLN A . n A 1 105 GLY 105 725 725 GLY GLY A . n A 1 106 GLY 106 726 726 GLY GLY A . n A 1 107 ALA 107 727 727 ALA ALA A . n A 1 108 VAL 108 728 728 VAL VAL A . n A 1 109 LEU 109 729 729 LEU LEU A . n A 1 110 ARG 110 730 730 ARG ARG A . n A 1 111 GLN 111 731 731 GLN GLN A . n A 1 112 ALA 112 732 732 ALA ALA A . n A 1 113 ARG 113 733 733 ARG ARG A . n A 1 114 ARG 114 734 734 ARG ARG A . n A 1 115 GLN 115 735 735 GLN GLN A . n A 1 116 ALA 116 736 736 ALA ALA A . n A 1 117 GLU 117 737 737 GLU GLU A . n A 1 118 LYS 118 738 738 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8VI 1 1739 1739 8VI 8VI A . C 3 EDO 1 1800 1800 EDO EDO A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . D 4 HOH 75 2075 2075 HOH HOH A . D 4 HOH 76 2076 2076 HOH HOH A . D 4 HOH 77 2077 2077 HOH HOH A . D 4 HOH 78 2078 2078 HOH HOH A . D 4 HOH 79 2079 2079 HOH HOH A . D 4 HOH 80 2080 2080 HOH HOH A . D 4 HOH 81 2081 2081 HOH HOH A . D 4 HOH 82 2082 2082 HOH HOH A . D 4 HOH 83 2083 2083 HOH HOH A . D 4 HOH 84 2084 2084 HOH HOH A . D 4 HOH 85 2085 2085 HOH HOH A . D 4 HOH 86 2086 2086 HOH HOH A . D 4 HOH 87 2087 2087 HOH HOH A . D 4 HOH 88 2088 2088 HOH HOH A . D 4 HOH 89 2089 2089 HOH HOH A . D 4 HOH 90 2090 2090 HOH HOH A . D 4 HOH 91 2091 2091 HOH HOH A . D 4 HOH 92 2092 2092 HOH HOH A . D 4 HOH 93 2093 2093 HOH HOH A . D 4 HOH 94 2094 2094 HOH HOH A . D 4 HOH 95 2095 2095 HOH HOH A . D 4 HOH 96 2096 2096 HOH HOH A . D 4 HOH 97 2097 2097 HOH HOH A . D 4 HOH 98 2098 2098 HOH HOH A . D 4 HOH 99 2099 2099 HOH HOH A . D 4 HOH 100 2100 2100 HOH HOH A . D 4 HOH 101 2101 2101 HOH HOH A . D 4 HOH 102 2102 2102 HOH HOH A . D 4 HOH 103 2103 2103 HOH HOH A . D 4 HOH 104 2104 2104 HOH HOH A . D 4 HOH 105 2105 2105 HOH HOH A . D 4 HOH 106 2106 2106 HOH HOH A . D 4 HOH 107 2107 2107 HOH HOH A . D 4 HOH 108 2108 2108 HOH HOH A . D 4 HOH 109 2109 2109 HOH HOH A . D 4 HOH 110 2110 2110 HOH HOH A . D 4 HOH 111 2111 2111 HOH HOH A . D 4 HOH 112 2112 2112 HOH HOH A . D 4 HOH 113 2113 2113 HOH HOH A . D 4 HOH 114 2114 2114 HOH HOH A . D 4 HOH 115 2115 2115 HOH HOH A . D 4 HOH 116 2116 2116 HOH HOH A . D 4 HOH 117 2117 2117 HOH HOH A . D 4 HOH 118 2118 2118 HOH HOH A . D 4 HOH 119 2119 2119 HOH HOH A . D 4 HOH 120 2120 2120 HOH HOH A . D 4 HOH 121 2121 2121 HOH HOH A . D 4 HOH 122 2122 2122 HOH HOH A . D 4 HOH 123 2123 2123 HOH HOH A . D 4 HOH 124 2124 2124 HOH HOH A . D 4 HOH 125 2125 2125 HOH HOH A . D 4 HOH 126 2126 2126 HOH HOH A . D 4 HOH 127 2127 2127 HOH HOH A . D 4 HOH 128 2128 2128 HOH HOH A . D 4 HOH 129 2129 2129 HOH HOH A . D 4 HOH 130 2130 2130 HOH HOH A . D 4 HOH 131 2131 2131 HOH HOH A . D 4 HOH 132 2132 2132 HOH HOH A . D 4 HOH 133 2133 2133 HOH HOH A . D 4 HOH 134 2134 2134 HOH HOH A . D 4 HOH 135 2135 2135 HOH HOH A . D 4 HOH 136 2136 2136 HOH HOH A . D 4 HOH 137 2137 2137 HOH HOH A . D 4 HOH 138 2138 2138 HOH HOH A . D 4 HOH 139 2139 2139 HOH HOH A . D 4 HOH 140 2140 2140 HOH HOH A . D 4 HOH 141 2141 2141 HOH HOH A . D 4 HOH 142 2142 2142 HOH HOH A . D 4 HOH 143 2143 2143 HOH HOH A . D 4 HOH 144 2144 2144 HOH HOH A . D 4 HOH 145 2145 2145 HOH HOH A . D 4 HOH 146 2146 2146 HOH HOH A . D 4 HOH 147 2147 2147 HOH HOH A . D 4 HOH 148 2148 2148 HOH HOH A . D 4 HOH 149 2149 2149 HOH HOH A . D 4 HOH 150 2150 2150 HOH HOH A . D 4 HOH 151 2151 2151 HOH HOH A . D 4 HOH 152 2152 2152 HOH HOH A . D 4 HOH 153 2153 2153 HOH HOH A . D 4 HOH 154 2154 2154 HOH HOH A . D 4 HOH 155 2155 2155 HOH HOH A . D 4 HOH 156 2156 2156 HOH HOH A . D 4 HOH 157 2157 2157 HOH HOH A . D 4 HOH 158 2158 2158 HOH HOH A . D 4 HOH 159 2159 2159 HOH HOH A . D 4 HOH 160 2160 2160 HOH HOH A . D 4 HOH 161 2161 2161 HOH HOH A . D 4 HOH 162 2162 2162 HOH HOH A . D 4 HOH 163 2163 2163 HOH HOH A . D 4 HOH 164 2164 2164 HOH HOH A . D 4 HOH 165 2165 2165 HOH HOH A . D 4 HOH 166 2166 2166 HOH HOH A . D 4 HOH 167 2167 2167 HOH HOH A . D 4 HOH 168 2168 2168 HOH HOH A . D 4 HOH 169 2169 2169 HOH HOH A . D 4 HOH 170 2170 2170 HOH HOH A . D 4 HOH 171 2171 2171 HOH HOH A . D 4 HOH 172 2172 2172 HOH HOH A . D 4 HOH 173 2173 2173 HOH HOH A . D 4 HOH 174 2174 2174 HOH HOH A . D 4 HOH 175 2175 2175 HOH HOH A . D 4 HOH 176 2176 2176 HOH HOH A . D 4 HOH 177 2177 2177 HOH HOH A . D 4 HOH 178 2178 2178 HOH HOH A . D 4 HOH 179 2179 2179 HOH HOH A . D 4 HOH 180 2180 2180 HOH HOH A . D 4 HOH 181 2181 2181 HOH HOH A . D 4 HOH 182 2182 2182 HOH HOH A . D 4 HOH 183 2183 2183 HOH HOH A . D 4 HOH 184 2184 2184 HOH HOH A . D 4 HOH 185 2185 2185 HOH HOH A . D 4 HOH 186 2186 2186 HOH HOH A . D 4 HOH 187 2187 2187 HOH HOH A . D 4 HOH 188 2188 2188 HOH HOH A . D 4 HOH 189 2189 2189 HOH HOH A . D 4 HOH 190 2190 2190 HOH HOH A . D 4 HOH 191 2191 2191 HOH HOH A . D 4 HOH 192 2192 2192 HOH HOH A . D 4 HOH 193 2193 2193 HOH HOH A . D 4 HOH 194 2194 2194 HOH HOH A . D 4 HOH 195 2195 2195 HOH HOH A . D 4 HOH 196 2196 2196 HOH HOH A . D 4 HOH 197 2197 2197 HOH HOH A . D 4 HOH 198 2198 2198 HOH HOH A . D 4 HOH 199 2199 2199 HOH HOH A . D 4 HOH 200 2200 2200 HOH HOH A . D 4 HOH 201 2201 2201 HOH HOH A . D 4 HOH 202 2202 2202 HOH HOH A . D 4 HOH 203 2203 2203 HOH HOH A . D 4 HOH 204 2204 2204 HOH HOH A . D 4 HOH 205 2205 2205 HOH HOH A . D 4 HOH 206 2206 2206 HOH HOH A . D 4 HOH 207 2207 2207 HOH HOH A . D 4 HOH 208 2208 2208 HOH HOH A . D 4 HOH 209 2209 2209 HOH HOH A . D 4 HOH 210 2210 2210 HOH HOH A . D 4 HOH 211 2211 2211 HOH HOH A . D 4 HOH 212 2212 2212 HOH HOH A . D 4 HOH 213 2213 2213 HOH HOH A . D 4 HOH 214 2214 2214 HOH HOH A . D 4 HOH 215 2215 2215 HOH HOH A . D 4 HOH 216 2216 2216 HOH HOH A . D 4 HOH 217 2217 2217 HOH HOH A . D 4 HOH 218 2218 2218 HOH HOH A . D 4 HOH 219 2219 2219 HOH HOH A . D 4 HOH 220 2220 2220 HOH HOH A . D 4 HOH 221 2221 2221 HOH HOH A . D 4 HOH 222 2222 2222 HOH HOH A . D 4 HOH 223 2223 2223 HOH HOH A . D 4 HOH 224 2224 2224 HOH HOH A . D 4 HOH 225 2225 2225 HOH HOH A . D 4 HOH 226 2226 2226 HOH HOH A . D 4 HOH 227 2227 2227 HOH HOH A . D 4 HOH 228 2228 2228 HOH HOH A . D 4 HOH 229 2229 2229 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2036 ? D HOH . 2 1 A HOH 2112 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-07-06 2 'Structure model' 1 1 2018-05-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.pdbx_synchrotron_beamline' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 15.9435 _pdbx_refine_tls.origin_y 34.5666 _pdbx_refine_tls.origin_z 32.1697 _pdbx_refine_tls.T[1][1] 0.0262 _pdbx_refine_tls.T[2][2] 0.0606 _pdbx_refine_tls.T[3][3] 0.0242 _pdbx_refine_tls.T[1][2] 0.0066 _pdbx_refine_tls.T[1][3] 0.0087 _pdbx_refine_tls.T[2][3] 0.0028 _pdbx_refine_tls.L[1][1] 1.2999 _pdbx_refine_tls.L[2][2] 0.7354 _pdbx_refine_tls.L[3][3] 0.3775 _pdbx_refine_tls.L[1][2] -0.1126 _pdbx_refine_tls.L[1][3] -0.6943 _pdbx_refine_tls.L[2][3] 0.1262 _pdbx_refine_tls.S[1][1] 0.0911 _pdbx_refine_tls.S[1][2] -0.0331 _pdbx_refine_tls.S[1][3] -0.1018 _pdbx_refine_tls.S[2][1] 0.0137 _pdbx_refine_tls.S[2][2] -0.1597 _pdbx_refine_tls.S[2][3] 0.0250 _pdbx_refine_tls.S[3][1] -0.0388 _pdbx_refine_tls.S[3][2] 0.0028 _pdbx_refine_tls.S[3][3] 0.0687 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 623 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 738 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.6.0117 ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2004 ? 6.41 . 2 1 O ? A HOH 2006 ? 6.00 . 3 1 O ? A HOH 2015 ? 6.18 . 4 1 O ? A HOH 2050 ? 6.84 . 5 1 O ? A HOH 2228 ? 6.68 . 6 1 O ? A HOH 2229 ? 9.79 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 623 ? CG ? A GLU 3 CG 2 1 Y 1 A GLU 623 ? CD ? A GLU 3 CD 3 1 Y 1 A GLU 623 ? OE1 ? A GLU 3 OE1 4 1 Y 1 A GLU 623 ? OE2 ? A GLU 3 OE2 5 1 Y 1 A LYS 738 ? CG ? A LYS 118 CG 6 1 Y 1 A LYS 738 ? CD ? A LYS 118 CD 7 1 Y 1 A LYS 738 ? CE ? A LYS 118 CE 8 1 Y 1 A LYS 738 ? NZ ? A LYS 118 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 621 ? A GLY 1 2 1 Y 1 A GLN 622 ? A GLN 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-N-ethyl-2-methoxy-benzamide' 8VI 3 1,2-ETHANEDIOL EDO 4 water HOH #