HEADER TRANSFERASE 23-MAY-16 5G5A TITLE GLUTATHIONE TRANSFERASE U25 FROM ARABIDOPSIS THALIANA IN COMPLEX WITH TITLE 2 GLUTATHIONE DISULFIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE U25; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.5.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: TUNER; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET24A KEYWDS TRANSFERASE, GLUTATHIONE, ARABIDOPSIS, TNT EXPDTA X-RAY DIFFRACTION AUTHOR L.AHMAD,E.RYLOTT,N.C.BRUCE,G.GROGAN REVDAT 2 10-JAN-24 5G5A 1 LINK REVDAT 1 07-JUN-17 5G5A 0 JRNL AUTH L.AHMAD,E.RYLOTT,N.C.BRUCE,G.GROGAN JRNL TITL STRUCTURE OF GLUTATHIONE TRANSFERASE U25 FROM ARABIDOPSIS JRNL TITL 2 THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 71875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3688 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5228 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.4130 REMARK 3 BIN FREE R VALUE SET COUNT : 284 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 719 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 16.35000 REMARK 3 B33 (A**2) : -16.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.465 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7407 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6977 ; 0.014 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10008 ; 1.935 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16127 ; 1.814 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 873 ; 5.550 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 324 ;34.948 ;24.198 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1261 ;13.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;10.928 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1056 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8204 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1676 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3498 ; 3.197 ; 3.043 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3497 ; 3.195 ; 3.042 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4366 ; 3.741 ; 4.550 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3909 ; 4.321 ; 3.401 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5G5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1290066911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4TOP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 5.5 AND 23 % (W/V) PEG 3350; 2 MM GSH REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.91500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.37750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.83400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.37750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.91500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.83400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 221 REMARK 465 MET B 1 REMARK 465 GLU B 221 REMARK 465 MET C 1 REMARK 465 GLU C 221 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLU D 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLU A 203 OE1 OE2 REMARK 470 LYS A 207 CD CE NZ REMARK 470 LYS A 214 CD CE NZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 LYS B 126 CD CE NZ REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 GLU B 193 CD OE1 OE2 REMARK 470 LYS B 197 CE NZ REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 GLU B 219 CD OE1 OE2 REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 GLU C 119 CG CD OE1 OE2 REMARK 470 LYS C 133 CE NZ REMARK 470 GLU C 193 CG CD OE1 OE2 REMARK 470 LYS C 207 CD CE NZ REMARK 470 LYS C 214 CD CE NZ REMARK 470 LYS D 29 CG CD CE NZ REMARK 470 LYS D 81 CG CD CE NZ REMARK 470 LYS D 117 CG CD CE NZ REMARK 470 GLU D 119 CG CD OE1 OE2 REMARK 470 LYS D 197 CD CE NZ REMARK 470 LYS D 207 CG CD CE NZ REMARK 470 GLU D 211 CG CD OE1 OE2 REMARK 470 LYS D 214 CG CD CE NZ REMARK 470 GLU D 219 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU D 193 O HOH D 2133 1.47 REMARK 500 N LYS D 197 O HOH D 2133 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2025 O HOH D 2085 4455 1.26 REMARK 500 OG SER A 172 OE2 GLU B 178 4445 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 31 CB - CG - OD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG B 92 CD - NE - CZ ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG B 92 NE - CZ - NH1 ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG B 92 NE - CZ - NH2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP C 9 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG C 92 NE - CZ - NH1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG C 92 NE - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG D 92 NE - CZ - NH1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG D 92 NE - CZ - NH2 ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 39 74.69 -150.50 REMARK 500 GLU A 66 115.66 77.87 REMARK 500 TRP A 78 74.56 -114.70 REMARK 500 GLU B 66 114.52 77.54 REMARK 500 GLU C 66 116.60 79.71 REMARK 500 GLU D 66 116.64 78.49 REMARK 500 TRP D 78 69.63 -113.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D2152 DISTANCE = 6.79 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for residues GSH A1221 and GSH REMARK 800 A1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for residues GSH B1221 and GSH REMARK 800 B1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for residues GSH C1221 and GSH REMARK 800 C1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for residues GSH D1221 and GSH REMARK 800 D1222 DBREF 5G5A A 1 221 UNP Q9SHH7 GSTUP_ARATH 1 221 DBREF 5G5A B 1 221 UNP Q9SHH7 GSTUP_ARATH 1 221 DBREF 5G5A C 1 221 UNP Q9SHH7 GSTUP_ARATH 1 221 DBREF 5G5A D 1 221 UNP Q9SHH7 GSTUP_ARATH 1 221 SEQRES 1 A 221 MET ALA ASP GLU VAL ILE LEU LEU ASP PHE TRP PRO SER SEQRES 2 A 221 MET PHE GLY MET ARG THR ARG ILE ALA LEU GLU GLU LYS SEQRES 3 A 221 ASN VAL LYS PHE ASP TYR ARG GLU GLN ASP LEU TRP ASN SEQRES 4 A 221 LYS SER PRO ILE LEU LEU GLU MET ASN PRO VAL HIS LYS SEQRES 5 A 221 LYS ILE PRO VAL LEU ILE HIS ASN GLY ASN PRO VAL CYS SEQRES 6 A 221 GLU SER LEU ILE GLN ILE GLU TYR ILE ASP GLU VAL TRP SEQRES 7 A 221 PRO SER LYS THR PRO LEU LEU PRO SER ASP PRO TYR GLN SEQRES 8 A 221 ARG ALA GLN ALA LYS PHE TRP GLY ASP PHE ILE ASP LYS SEQRES 9 A 221 LYS VAL TYR ALA SER ALA ARG LEU ILE TRP GLY ALA LYS SEQRES 10 A 221 GLY GLU GLU HIS GLU ALA GLY LYS LYS GLU PHE ILE GLU SEQRES 11 A 221 ILE LEU LYS THR LEU GLU SER GLU LEU GLY ASP LYS THR SEQRES 12 A 221 TYR PHE GLY GLY GLU THR PHE GLY TYR VAL ASP ILE ALA SEQRES 13 A 221 LEU ILE GLY PHE TYR SER TRP PHE GLU ALA TYR GLU LYS SEQRES 14 A 221 PHE GLY SER PHE SER ILE GLU ALA GLU CYS PRO LYS LEU SEQRES 15 A 221 ILE ALA TRP GLY LYS ARG CYS VAL GLU ARG GLU SER VAL SEQRES 16 A 221 ALA LYS SER LEU PRO ASP SER GLU LYS ILE ILE LYS PHE SEQRES 17 A 221 VAL PRO GLU LEU ARG LYS LYS LEU GLY ILE GLU ILE GLU SEQRES 1 B 221 MET ALA ASP GLU VAL ILE LEU LEU ASP PHE TRP PRO SER SEQRES 2 B 221 MET PHE GLY MET ARG THR ARG ILE ALA LEU GLU GLU LYS SEQRES 3 B 221 ASN VAL LYS PHE ASP TYR ARG GLU GLN ASP LEU TRP ASN SEQRES 4 B 221 LYS SER PRO ILE LEU LEU GLU MET ASN PRO VAL HIS LYS SEQRES 5 B 221 LYS ILE PRO VAL LEU ILE HIS ASN GLY ASN PRO VAL CYS SEQRES 6 B 221 GLU SER LEU ILE GLN ILE GLU TYR ILE ASP GLU VAL TRP SEQRES 7 B 221 PRO SER LYS THR PRO LEU LEU PRO SER ASP PRO TYR GLN SEQRES 8 B 221 ARG ALA GLN ALA LYS PHE TRP GLY ASP PHE ILE ASP LYS SEQRES 9 B 221 LYS VAL TYR ALA SER ALA ARG LEU ILE TRP GLY ALA LYS SEQRES 10 B 221 GLY GLU GLU HIS GLU ALA GLY LYS LYS GLU PHE ILE GLU SEQRES 11 B 221 ILE LEU LYS THR LEU GLU SER GLU LEU GLY ASP LYS THR SEQRES 12 B 221 TYR PHE GLY GLY GLU THR PHE GLY TYR VAL ASP ILE ALA SEQRES 13 B 221 LEU ILE GLY PHE TYR SER TRP PHE GLU ALA TYR GLU LYS SEQRES 14 B 221 PHE GLY SER PHE SER ILE GLU ALA GLU CYS PRO LYS LEU SEQRES 15 B 221 ILE ALA TRP GLY LYS ARG CYS VAL GLU ARG GLU SER VAL SEQRES 16 B 221 ALA LYS SER LEU PRO ASP SER GLU LYS ILE ILE LYS PHE SEQRES 17 B 221 VAL PRO GLU LEU ARG LYS LYS LEU GLY ILE GLU ILE GLU SEQRES 1 C 221 MET ALA ASP GLU VAL ILE LEU LEU ASP PHE TRP PRO SER SEQRES 2 C 221 MET PHE GLY MET ARG THR ARG ILE ALA LEU GLU GLU LYS SEQRES 3 C 221 ASN VAL LYS PHE ASP TYR ARG GLU GLN ASP LEU TRP ASN SEQRES 4 C 221 LYS SER PRO ILE LEU LEU GLU MET ASN PRO VAL HIS LYS SEQRES 5 C 221 LYS ILE PRO VAL LEU ILE HIS ASN GLY ASN PRO VAL CYS SEQRES 6 C 221 GLU SER LEU ILE GLN ILE GLU TYR ILE ASP GLU VAL TRP SEQRES 7 C 221 PRO SER LYS THR PRO LEU LEU PRO SER ASP PRO TYR GLN SEQRES 8 C 221 ARG ALA GLN ALA LYS PHE TRP GLY ASP PHE ILE ASP LYS SEQRES 9 C 221 LYS VAL TYR ALA SER ALA ARG LEU ILE TRP GLY ALA LYS SEQRES 10 C 221 GLY GLU GLU HIS GLU ALA GLY LYS LYS GLU PHE ILE GLU SEQRES 11 C 221 ILE LEU LYS THR LEU GLU SER GLU LEU GLY ASP LYS THR SEQRES 12 C 221 TYR PHE GLY GLY GLU THR PHE GLY TYR VAL ASP ILE ALA SEQRES 13 C 221 LEU ILE GLY PHE TYR SER TRP PHE GLU ALA TYR GLU LYS SEQRES 14 C 221 PHE GLY SER PHE SER ILE GLU ALA GLU CYS PRO LYS LEU SEQRES 15 C 221 ILE ALA TRP GLY LYS ARG CYS VAL GLU ARG GLU SER VAL SEQRES 16 C 221 ALA LYS SER LEU PRO ASP SER GLU LYS ILE ILE LYS PHE SEQRES 17 C 221 VAL PRO GLU LEU ARG LYS LYS LEU GLY ILE GLU ILE GLU SEQRES 1 D 221 MET ALA ASP GLU VAL ILE LEU LEU ASP PHE TRP PRO SER SEQRES 2 D 221 MET PHE GLY MET ARG THR ARG ILE ALA LEU GLU GLU LYS SEQRES 3 D 221 ASN VAL LYS PHE ASP TYR ARG GLU GLN ASP LEU TRP ASN SEQRES 4 D 221 LYS SER PRO ILE LEU LEU GLU MET ASN PRO VAL HIS LYS SEQRES 5 D 221 LYS ILE PRO VAL LEU ILE HIS ASN GLY ASN PRO VAL CYS SEQRES 6 D 221 GLU SER LEU ILE GLN ILE GLU TYR ILE ASP GLU VAL TRP SEQRES 7 D 221 PRO SER LYS THR PRO LEU LEU PRO SER ASP PRO TYR GLN SEQRES 8 D 221 ARG ALA GLN ALA LYS PHE TRP GLY ASP PHE ILE ASP LYS SEQRES 9 D 221 LYS VAL TYR ALA SER ALA ARG LEU ILE TRP GLY ALA LYS SEQRES 10 D 221 GLY GLU GLU HIS GLU ALA GLY LYS LYS GLU PHE ILE GLU SEQRES 11 D 221 ILE LEU LYS THR LEU GLU SER GLU LEU GLY ASP LYS THR SEQRES 12 D 221 TYR PHE GLY GLY GLU THR PHE GLY TYR VAL ASP ILE ALA SEQRES 13 D 221 LEU ILE GLY PHE TYR SER TRP PHE GLU ALA TYR GLU LYS SEQRES 14 D 221 PHE GLY SER PHE SER ILE GLU ALA GLU CYS PRO LYS LEU SEQRES 15 D 221 ILE ALA TRP GLY LYS ARG CYS VAL GLU ARG GLU SER VAL SEQRES 16 D 221 ALA LYS SER LEU PRO ASP SER GLU LYS ILE ILE LYS PHE SEQRES 17 D 221 VAL PRO GLU LEU ARG LYS LYS LEU GLY ILE GLU ILE GLU HET GSH A1221 20 HET GSH A1222 20 HET GSH B1221 20 HET GSH B1222 20 HET GSH C1221 20 HET GSH C1222 20 HET GSH D1221 20 HET GSH D1222 20 HETNAM GSH GLUTATHIONE FORMUL 5 GSH 8(C10 H17 N3 O6 S) FORMUL 13 HOH *719(H2 O) HELIX 1 1 SER A 13 LYS A 26 1 14 HELIX 2 2 SER A 41 ASN A 48 1 8 HELIX 3 3 GLU A 66 TRP A 78 1 13 HELIX 4 4 ASP A 88 ALA A 116 1 29 HELIX 5 5 LYS A 117 GLY A 140 1 24 HELIX 6 6 GLY A 151 SER A 162 1 12 HELIX 7 7 TRP A 163 SER A 172 1 10 HELIX 8 8 SER A 174 CYS A 179 1 6 HELIX 9 9 CYS A 179 GLU A 191 1 13 HELIX 10 10 ARG A 192 LEU A 199 1 8 HELIX 11 11 ASP A 201 LEU A 216 1 16 HELIX 12 12 SER B 13 LYS B 26 1 14 HELIX 13 13 SER B 41 ASN B 48 1 8 HELIX 14 14 GLU B 66 TRP B 78 1 13 HELIX 15 15 ASP B 88 ALA B 116 1 29 HELIX 16 16 LYS B 117 GLY B 140 1 24 HELIX 17 17 GLY B 151 SER B 162 1 12 HELIX 18 18 TRP B 163 SER B 172 1 10 HELIX 19 19 SER B 174 CYS B 179 1 6 HELIX 20 20 CYS B 179 GLU B 191 1 13 HELIX 21 21 ARG B 192 LEU B 199 1 8 HELIX 22 22 ASP B 201 LEU B 216 1 16 HELIX 23 23 SER C 13 LYS C 26 1 14 HELIX 24 24 SER C 41 ASN C 48 1 8 HELIX 25 25 GLU C 66 TRP C 78 1 13 HELIX 26 26 ASP C 88 ALA C 116 1 29 HELIX 27 27 LYS C 117 GLY C 140 1 24 HELIX 28 28 GLY C 151 SER C 162 1 12 HELIX 29 29 TRP C 163 SER C 172 1 10 HELIX 30 30 SER C 174 CYS C 179 1 6 HELIX 31 31 CYS C 179 GLU C 191 1 13 HELIX 32 32 ARG C 192 LEU C 199 1 8 HELIX 33 33 ASP C 201 LEU C 216 1 16 HELIX 34 34 SER D 13 LYS D 26 1 14 HELIX 35 35 SER D 41 ASN D 48 1 8 HELIX 36 36 GLU D 66 TRP D 78 1 13 HELIX 37 37 ASP D 88 ALA D 116 1 29 HELIX 38 38 LYS D 117 GLY D 140 1 24 HELIX 39 39 GLY D 151 SER D 162 1 12 HELIX 40 40 TRP D 163 SER D 172 1 10 HELIX 41 41 SER D 174 CYS D 179 1 6 HELIX 42 42 CYS D 179 GLU D 191 1 13 HELIX 43 43 ARG D 192 LEU D 199 1 8 HELIX 44 44 ASP D 201 LEU D 216 1 16 SHEET 1 AA 4 ASP A 31 GLU A 34 0 SHEET 2 AA 4 VAL A 5 ASP A 9 1 O VAL A 5 N ASP A 31 SHEET 3 AA 4 VAL A 56 HIS A 59 -1 O VAL A 56 N LEU A 8 SHEET 4 AA 4 ASN A 62 CYS A 65 -1 O ASN A 62 N HIS A 59 SHEET 1 BA 4 ASP B 31 GLU B 34 0 SHEET 2 BA 4 VAL B 5 ASP B 9 1 O VAL B 5 N ASP B 31 SHEET 3 BA 4 VAL B 56 HIS B 59 -1 O VAL B 56 N LEU B 8 SHEET 4 BA 4 ASN B 62 CYS B 65 -1 O ASN B 62 N HIS B 59 SHEET 1 CA 4 ASP C 31 GLU C 34 0 SHEET 2 CA 4 VAL C 5 ASP C 9 1 O VAL C 5 N ASP C 31 SHEET 3 CA 4 VAL C 56 HIS C 59 -1 O VAL C 56 N LEU C 8 SHEET 4 CA 4 ASN C 62 CYS C 65 -1 O ASN C 62 N HIS C 59 SHEET 1 DA 4 ASP D 31 GLU D 34 0 SHEET 2 DA 4 VAL D 5 ASP D 9 1 O VAL D 5 N ASP D 31 SHEET 3 DA 4 VAL D 56 HIS D 59 -1 O VAL D 56 N LEU D 8 SHEET 4 DA 4 ASN D 62 CYS D 65 -1 O ASN D 62 N HIS D 59 LINK SG2 GSH A1221 SG2 GSH A1222 1555 1555 2.06 LINK SG2 GSH B1221 SG2 GSH B1222 1555 1555 2.02 LINK SG2 GSH C1221 SG2 GSH C1222 1555 1555 2.03 LINK SG2 GSH D1221 SG2 GSH D1222 1555 1555 2.04 CISPEP 1 ILE A 54 PRO A 55 0 -3.65 CISPEP 2 ILE B 54 PRO B 55 0 -4.98 CISPEP 3 ILE C 54 PRO C 55 0 -7.04 CISPEP 4 ILE D 54 PRO D 55 0 -10.02 SITE 1 AC1 16 SER A 13 PHE A 15 LYS A 40 LYS A 53 SITE 2 AC1 16 ILE A 54 PRO A 55 GLU A 66 SER A 67 SITE 3 AC1 16 TYR A 107 ARG A 111 HOH A2010 HOH A2064 SITE 4 AC1 16 HOH A2071 HOH A2111 HOH A2189 HOH A2190 SITE 1 AC2 17 SER B 13 PHE B 15 LYS B 40 LYS B 53 SITE 2 AC2 17 ILE B 54 PRO B 55 GLU B 66 SER B 67 SITE 3 AC2 17 TYR B 107 ARG B 111 HOH B2088 HOH B2096 SITE 4 AC2 17 HOH B2129 HOH B2204 HOH B2205 HOH B2206 SITE 5 AC2 17 HOH B2207 SITE 1 AC3 17 SER C 13 PHE C 15 LYS C 40 LYS C 53 SITE 2 AC3 17 ILE C 54 PRO C 55 GLU C 66 SER C 67 SITE 3 AC3 17 TYR C 107 ARG C 111 HOH C2012 HOH C2057 SITE 4 AC3 17 HOH C2105 HOH C2168 HOH C2169 HOH C2170 SITE 5 AC3 17 LYS D 104 SITE 1 AC4 19 LYS C 104 HOH C2108 SER D 13 PHE D 15 SITE 2 AC4 19 LEU D 37 LYS D 40 LYS D 53 ILE D 54 SITE 3 AC4 19 PRO D 55 GLU D 66 SER D 67 TYR D 107 SITE 4 AC4 19 ARG D 111 HOH D2027 HOH D2043 HOH D2047 SITE 5 AC4 19 HOH D2149 HOH D2150 HOH D2151 CRYST1 87.830 107.668 108.755 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011386 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009195 0.00000 MTRIX1 1 -0.943300 0.318400 -0.093400 -26.08000 1 MTRIX2 1 0.314400 0.767700 -0.558400 1.90100 1 MTRIX3 1 -0.106100 -0.556100 -0.824300 -9.12100 1 MTRIX1 2 0.910600 -0.311800 -0.271300 10.61000 1 MTRIX2 2 -0.411800 -0.739900 -0.532000 14.64000 1 MTRIX3 2 -0.034850 0.596100 -0.802100 -25.73000 1 MTRIX1 3 -0.988100 -0.054070 0.143900 -27.19000 1 MTRIX2 3 0.043710 -0.996300 -0.074180 31.43000 1 MTRIX3 3 0.147400 -0.067010 0.986800 3.41500 1