HEADER SIGNALING PROTEIN 23-JUN-16 5GIJ TITLE CRYSTAL STRUCTURE OF TDR-TDIF COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 31-631; COMPND 5 SYNONYM: PROTEIN PHLOEM INTERCALATED WITH XYLEM,TRACHEARY ELEMENT COMPND 6 DIFFERENTIATION INHIBITORY FACTOR RECEPTOR,TDIF RECEPTOR; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PEPTIDE FROM CLAVATA3/ESR (CLE)-RELATED PROTEIN 41; COMPND 12 CHAIN: D; COMPND 13 SYNONYM: TRACHEARY ELEMENT DIFFERENTIATION INHIBITORY FACTOR-LIKE COMPND 14 PROTEIN,TDIF-LIKE PROTEIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: TDR, PXY, AT5G61480, MCI2.4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 15 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 16 ORGANISM_TAXID: 3702 KEYWDS LRR, TDR, TDIF, PXY, LRR-RK, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.MORITA,K.KATO,R.ISHITANI,H.NISHIMASU,O.NUREKI REVDAT 3 08-NOV-23 5GIJ 1 HETSYN LINK REVDAT 2 29-JUL-20 5GIJ 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 24-AUG-16 5GIJ 0 JRNL AUTH J.MORITA,K.KATO,T.NAKANE,Y.KONDO,H.FUKUDA,H.NISHIMASU, JRNL AUTH 2 R.ISHITANI,O.NUREKI JRNL TITL CRYSTAL STRUCTURE OF THE PLANT RECEPTOR-LIKE KINASE TDR IN JRNL TITL 2 COMPLEX WITH THE TDIF PEPTIDE JRNL REF NAT COMMUN V. 7 12383 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27498761 JRNL DOI 10.1038/NCOMMS12383 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 47593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.5670 - 7.7081 0.99 2837 151 0.2165 0.2031 REMARK 3 2 7.7081 - 6.1203 0.99 2729 139 0.2069 0.2267 REMARK 3 3 6.1203 - 5.3473 1.00 2686 144 0.2100 0.2395 REMARK 3 4 5.3473 - 4.8587 1.00 2688 146 0.1633 0.1786 REMARK 3 5 4.8587 - 4.5106 0.99 2625 136 0.1600 0.1573 REMARK 3 6 4.5106 - 4.2447 1.00 2681 146 0.1655 0.2046 REMARK 3 7 4.2447 - 4.0322 1.00 2648 137 0.1716 0.2059 REMARK 3 8 4.0322 - 3.8567 1.00 2649 139 0.1935 0.2468 REMARK 3 9 3.8567 - 3.7083 1.00 2634 142 0.2257 0.2719 REMARK 3 10 3.7083 - 3.5803 1.00 2645 136 0.2541 0.2831 REMARK 3 11 3.5803 - 3.4684 0.99 2633 140 0.2778 0.3248 REMARK 3 12 3.4684 - 3.3693 1.00 2628 139 0.2885 0.2771 REMARK 3 13 3.3693 - 3.2806 1.00 2598 139 0.2977 0.3517 REMARK 3 14 3.2806 - 3.2006 1.00 2632 141 0.3067 0.3340 REMARK 3 15 3.2006 - 3.1278 1.00 2646 138 0.3366 0.3779 REMARK 3 16 3.1278 - 3.0612 1.00 2616 135 0.3532 0.3800 REMARK 3 17 3.0612 - 3.0000 1.00 2634 136 0.3679 0.3620 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5211 REMARK 3 ANGLE : 1.567 7134 REMARK 3 CHIRALITY : 0.086 869 REMARK 3 PLANARITY : 0.011 888 REMARK 3 DIHEDRAL : 15.537 3041 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300000835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47698 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 102.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4MNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 85.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM NITRATE, 0.1M SODIUM ACETATE REMARK 280 TRIHYDRATE, PH 4.8, 200MM AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.61400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 153.22800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 153.22800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.61400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, A, C, E, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 61 REMARK 465 GLY B 62 REMARK 465 GLN B 63 REMARK 465 ASN B 64 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 364 CG CD CE NZ REMARK 470 LYS B 584 CG CD CE NZ REMARK 470 ASP B 622 CG OD1 OD2 REMARK 470 LYS B 626 CG CD CE NZ REMARK 470 GLU B 635 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 430 O5 NAG F 1 2.14 REMARK 500 OD1 ASP B 303 OG SER B 305 2.16 REMARK 500 O6 MAN H 3 O5 MAN H 4 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 93 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 GLY B 436 C - N - CA ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 52 -73.92 -78.76 REMARK 500 VAL B 79 -63.30 -94.19 REMARK 500 THR B 132 -57.94 -124.24 REMARK 500 SER B 143 -150.55 60.58 REMARK 500 SER B 162 73.24 62.41 REMARK 500 SER B 187 -164.63 -127.22 REMARK 500 THR B 324 -58.87 -125.86 REMARK 500 GLU B 372 -59.89 -120.95 REMARK 500 ASN B 379 -169.02 -124.64 REMARK 500 ASN B 403 -168.79 -124.20 REMARK 500 ASP B 455 -120.05 66.90 REMARK 500 THR B 474 73.29 39.98 REMARK 500 VAL B 509 -66.06 -97.20 REMARK 500 THR B 587 -61.44 -107.53 REMARK 500 PRO D 9 47.13 -93.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 258 ALA B 259 148.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 5GIJ B 31 631 UNP Q9FII5 TDR_ARATH 31 631 DBREF 5GIJ D 1 12 UNP Q84W98 CLE41_ARATH 88 99 SEQADV 5GIJ ALA B 259 UNP Q9FII5 CYS 259 ENGINEERED MUTATION SEQADV 5GIJ SER B 540 UNP Q9FII5 CYS 540 ENGINEERED MUTATION SEQADV 5GIJ SER B 632 UNP Q9FII5 EXPRESSION TAG SEQADV 5GIJ GLY B 633 UNP Q9FII5 EXPRESSION TAG SEQADV 5GIJ LEU B 634 UNP Q9FII5 EXPRESSION TAG SEQADV 5GIJ GLU B 635 UNP Q9FII5 EXPRESSION TAG SEQADV 5GIJ VAL B 636 UNP Q9FII5 EXPRESSION TAG SEQADV 5GIJ LEU B 637 UNP Q9FII5 EXPRESSION TAG SEQRES 1 B 607 LYS PHE SER PRO GLN LEU LEU SER LEU LEU SER LEU LYS SEQRES 2 B 607 THR SER LEU SER GLY PRO PRO SER ALA PHE GLN ASP TRP SEQRES 3 B 607 LYS VAL PRO VAL ASN GLY GLN ASN ASP ALA VAL TRP CYS SEQRES 4 B 607 SER TRP SER GLY VAL VAL CYS ASP ASN VAL THR ALA GLN SEQRES 5 B 607 VAL ILE SER LEU ASP LEU SER HIS ARG ASN LEU SER GLY SEQRES 6 B 607 ARG ILE PRO ILE GLN ILE ARG TYR LEU SER SER LEU LEU SEQRES 7 B 607 TYR LEU ASN LEU SER GLY ASN SER LEU GLU GLY SER PHE SEQRES 8 B 607 PRO THR SER ILE PHE ASP LEU THR LYS LEU THR THR LEU SEQRES 9 B 607 ASP ILE SER ARG ASN SER PHE ASP SER SER PHE PRO PRO SEQRES 10 B 607 GLY ILE SER LYS LEU LYS PHE LEU LYS VAL PHE ASN ALA SEQRES 11 B 607 PHE SER ASN ASN PHE GLU GLY LEU LEU PRO SER ASP VAL SEQRES 12 B 607 SER ARG LEU ARG PHE LEU GLU GLU LEU ASN PHE GLY GLY SEQRES 13 B 607 SER TYR PHE GLU GLY GLU ILE PRO ALA ALA TYR GLY GLY SEQRES 14 B 607 LEU GLN ARG LEU LYS PHE ILE HIS LEU ALA GLY ASN VAL SEQRES 15 B 607 LEU GLY GLY LYS LEU PRO PRO ARG LEU GLY LEU LEU THR SEQRES 16 B 607 GLU LEU GLN HIS MET GLU ILE GLY TYR ASN HIS PHE ASN SEQRES 17 B 607 GLY ASN ILE PRO SER GLU PHE ALA LEU LEU SER ASN LEU SEQRES 18 B 607 LYS TYR PHE ASP VAL SER ASN ALA SER LEU SER GLY SER SEQRES 19 B 607 LEU PRO GLN GLU LEU GLY ASN LEU SER ASN LEU GLU THR SEQRES 20 B 607 LEU PHE LEU PHE GLN ASN GLY PHE THR GLY GLU ILE PRO SEQRES 21 B 607 GLU SER TYR SER ASN LEU LYS SER LEU LYS LEU LEU ASP SEQRES 22 B 607 PHE SER SER ASN GLN LEU SER GLY SER ILE PRO SER GLY SEQRES 23 B 607 PHE SER THR LEU LYS ASN LEU THR TRP LEU SER LEU ILE SEQRES 24 B 607 SER ASN ASN LEU SER GLY GLU VAL PRO GLU GLY ILE GLY SEQRES 25 B 607 GLU LEU PRO GLU LEU THR THR LEU PHE LEU TRP ASN ASN SEQRES 26 B 607 ASN PHE THR GLY VAL LEU PRO HIS LYS LEU GLY SER ASN SEQRES 27 B 607 GLY LYS LEU GLU THR MET ASP VAL SER ASN ASN SER PHE SEQRES 28 B 607 THR GLY THR ILE PRO SER SER LEU CYS HIS GLY ASN LYS SEQRES 29 B 607 LEU TYR LYS LEU ILE LEU PHE SER ASN MET PHE GLU GLY SEQRES 30 B 607 GLU LEU PRO LYS SER LEU THR ARG CYS GLU SER LEU TRP SEQRES 31 B 607 ARG PHE ARG SER GLN ASN ASN ARG LEU ASN GLY THR ILE SEQRES 32 B 607 PRO ILE GLY PHE GLY SER LEU ARG ASN LEU THR PHE VAL SEQRES 33 B 607 ASP LEU SER ASN ASN ARG PHE THR ASP GLN ILE PRO ALA SEQRES 34 B 607 ASP PHE ALA THR ALA PRO VAL LEU GLN TYR LEU ASN LEU SEQRES 35 B 607 SER THR ASN PHE PHE HIS ARG LYS LEU PRO GLU ASN ILE SEQRES 36 B 607 TRP LYS ALA PRO ASN LEU GLN ILE PHE SER ALA SER PHE SEQRES 37 B 607 SER ASN LEU ILE GLY GLU ILE PRO ASN TYR VAL GLY CYS SEQRES 38 B 607 LYS SER PHE TYR ARG ILE GLU LEU GLN GLY ASN SER LEU SEQRES 39 B 607 ASN GLY THR ILE PRO TRP ASP ILE GLY HIS CYS GLU LYS SEQRES 40 B 607 LEU LEU SER LEU ASN LEU SER GLN ASN HIS LEU ASN GLY SEQRES 41 B 607 ILE ILE PRO TRP GLU ILE SER THR LEU PRO SER ILE ALA SEQRES 42 B 607 ASP VAL ASP LEU SER HIS ASN LEU LEU THR GLY THR ILE SEQRES 43 B 607 PRO SER ASP PHE GLY SER SER LYS THR ILE THR THR PHE SEQRES 44 B 607 ASN VAL SER TYR ASN GLN LEU ILE GLY PRO ILE PRO SER SEQRES 45 B 607 GLY SER PHE ALA HIS LEU ASN PRO SER PHE PHE SER SER SEQRES 46 B 607 ASN GLU GLY LEU CYS GLY ASP LEU VAL GLY LYS PRO CYS SEQRES 47 B 607 ASN SER ASP SER GLY LEU GLU VAL LEU SEQRES 1 D 12 HIS GLU VAL HYP SER GLY HYP ASN PRO ILE SER ASN MODRES 5GIJ HYP D 4 PRO MODIFIED RESIDUE MODRES 5GIJ HYP D 7 PRO MODIFIED RESIDUE HET HYP D 4 8 HET HYP D 7 8 HET NAG A 1 14 HET NAG A 2 14 HET MAN A 3 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET MAN G 3 11 HET MAN G 4 11 HET NAG H 1 14 HET NAG H 2 14 HET MAN H 3 11 HET MAN H 4 11 HET FUC H 5 10 HET NAG I 1 14 HET NAG I 2 14 HET NAG B 704 14 HET NAG B 705 14 HET NAG B 706 14 HET NAG B 713 14 HETNAM HYP 4-HYDROXYPROLINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN HYP HYDROXYPROLINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 HYP 2(C5 H9 N O3) FORMUL 3 NAG 18(C8 H15 N O6) FORMUL 3 MAN 5(C6 H12 O6) FORMUL 8 FUC C6 H12 O5 HELIX 1 AA1 SER B 33 SER B 45 1 13 HELIX 2 AA2 ALA B 66 TRP B 71 5 6 HELIX 3 AA3 PRO B 98 LEU B 104 5 7 HELIX 4 AA4 PRO B 122 LEU B 128 5 7 HELIX 5 AA5 PRO B 146 LEU B 152 5 7 HELIX 6 AA6 PRO B 170 LEU B 176 5 7 HELIX 7 AA7 PRO B 194 LEU B 200 5 7 HELIX 8 AA8 PRO B 218 LEU B 224 5 7 HELIX 9 AA9 PRO B 242 LEU B 248 5 7 HELIX 10 AB1 PRO B 266 LEU B 272 5 7 HELIX 11 AB2 PRO B 290 LEU B 296 5 7 HELIX 12 AB3 PRO B 314 LEU B 320 5 7 HELIX 13 AB4 PRO B 338 LEU B 344 5 7 HELIX 14 AB5 LYS B 364 GLY B 369 5 6 HELIX 15 AB6 PRO B 410 CYS B 416 5 7 HELIX 16 AB7 GLY B 436 LEU B 440 5 5 HELIX 17 AB8 PRO B 458 ALA B 464 5 7 HELIX 18 AB9 ASN B 484 ALA B 488 5 5 HELIX 19 AC1 PRO B 529 CYS B 535 5 7 HELIX 20 AC2 PRO B 553 LEU B 559 5 7 HELIX 21 AC3 PRO B 577 SER B 583 5 7 HELIX 22 AC4 GLY B 603 LEU B 608 5 6 HELIX 23 AC5 ASN B 609 SER B 614 5 6 SHEET 1 AA1 2 LEU B 46 SER B 47 0 SHEET 2 AA1 2 SER B 94 GLY B 95 -1 O SER B 94 N SER B 47 SHEET 1 AA223 VAL B 74 CYS B 76 0 SHEET 2 AA223 VAL B 83 ASP B 87 -1 O ILE B 84 N VAL B 75 SHEET 3 AA223 TYR B 109 ASN B 111 1 O TYR B 109 N LEU B 86 SHEET 4 AA223 THR B 133 ASP B 135 1 O ASP B 135 N LEU B 110 SHEET 5 AA223 VAL B 157 ASN B 159 1 O VAL B 157 N LEU B 134 SHEET 6 AA223 GLU B 181 ASN B 183 1 O GLU B 181 N PHE B 158 SHEET 7 AA223 PHE B 205 HIS B 207 1 O PHE B 205 N LEU B 182 SHEET 8 AA223 HIS B 229 GLU B 231 1 O GLU B 231 N ILE B 206 SHEET 9 AA223 TYR B 253 ASP B 255 1 O ASP B 255 N MET B 230 SHEET 10 AA223 THR B 277 PHE B 279 1 O PHE B 279 N PHE B 254 SHEET 11 AA223 LEU B 301 ASP B 303 1 O ASP B 303 N LEU B 278 SHEET 12 AA223 TRP B 325 SER B 327 1 O SER B 327 N LEU B 302 SHEET 13 AA223 THR B 349 PHE B 351 1 O PHE B 351 N LEU B 326 SHEET 14 AA223 THR B 373 ASP B 375 1 O ASP B 375 N LEU B 350 SHEET 15 AA223 LYS B 397 ILE B 399 1 O ILE B 399 N MET B 374 SHEET 16 AA223 ARG B 421 ARG B 423 1 O ARG B 421 N LEU B 398 SHEET 17 AA223 PHE B 445 ASP B 447 1 O PHE B 445 N PHE B 422 SHEET 18 AA223 TYR B 469 ASN B 471 1 O TYR B 469 N VAL B 446 SHEET 19 AA223 ILE B 493 SER B 495 1 O ILE B 493 N LEU B 470 SHEET 20 AA223 ARG B 516 GLU B 518 1 O ARG B 516 N PHE B 494 SHEET 21 AA223 SER B 540 ASN B 542 1 O ASN B 542 N ILE B 517 SHEET 22 AA223 ASP B 564 ASP B 566 1 O ASP B 566 N LEU B 541 SHEET 23 AA223 THR B 588 ASN B 590 1 O THR B 588 N VAL B 565 SHEET 1 AA3 2 GLU B 118 SER B 120 0 SHEET 2 AA3 2 SER B 140 ASP B 142 1 O ASP B 142 N GLY B 119 SHEET 1 AA4 2 SER B 262 SER B 264 0 SHEET 2 AA4 2 GLY B 284 THR B 286 1 O THR B 286 N GLY B 263 SHEET 1 AA5 3 THR B 382 GLY B 383 0 SHEET 2 AA5 3 MET B 404 GLU B 408 1 O GLU B 406 N GLY B 383 SHEET 3 AA5 3 ARG B 428 ASN B 430 1 O ASN B 430 N GLY B 407 SHEET 1 AA6 2 ASN B 549 GLY B 550 0 SHEET 2 AA6 2 LEU B 571 LEU B 572 1 O LEU B 571 N GLY B 550 SHEET 1 AA7 2 ILE B 597 PRO B 599 0 SHEET 2 AA7 2 GLY B 618 CYS B 620 1 O CYS B 620 N GLY B 598 SSBOND 1 CYS B 69 CYS B 76 1555 1555 2.02 SSBOND 2 CYS B 390 CYS B 416 1555 1555 2.00 SSBOND 3 CYS B 511 CYS B 535 1555 1555 2.03 SSBOND 4 CYS B 620 CYS B 628 1555 1555 2.03 LINK ND2 ASN B 111 C1 NAG A 1 1555 1555 1.45 LINK ND2 ASN B 258 C1 NAG B 704 1555 1555 1.47 LINK ND2 ASN B 271 C1 NAG B 705 1555 1555 1.45 LINK ND2 ASN B 322 C1 NAG B 706 1555 1555 1.45 LINK ND2 ASN B 356 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 378 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 430 C1 NAG F 1 1555 1555 1.42 LINK ND2 ASN B 442 C1 NAG B 713 1555 1555 1.43 LINK ND2 ASN B 471 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN B 525 C1 NAG H 1 1555 1555 1.47 LINK ND2 ASN B 542 C1 NAG I 1 1555 1555 1.47 LINK C VAL D 3 N HYP D 4 1555 1555 1.33 LINK C HYP D 4 N SER D 5 1555 1555 1.33 LINK C GLY D 6 N HYP D 7 1555 1555 1.33 LINK C HYP D 7 N ASN D 8 1555 1555 1.33 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.46 LINK O4 NAG A 2 C1 MAN A 3 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.45 LINK O4 NAG G 2 C1 MAN G 3 1555 1555 1.44 LINK O6 MAN G 3 C1 MAN G 4 1555 1555 1.44 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 LINK O6 NAG H 1 C1 FUC H 5 1555 1555 1.44 LINK O4 NAG H 2 C1 MAN H 3 1555 1555 1.45 LINK O6 MAN H 3 C1 MAN H 4 1555 1555 1.43 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.46 CRYST1 132.921 132.921 229.842 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007523 0.004344 0.000000 0.00000 SCALE2 0.000000 0.008687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004351 0.00000