HEADER OXIDOREDUCTASE 28-JUN-16 5GJ7 TITLE PUTATIVE ACYL-COA DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE TYPE 2 DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-395; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. SOURCE 3 ACIDOCALDARIUS (STRAIN ATCC 27009 / DSM 446 / JCM 5260 / NBRC 15652 SOURCE 4 / NCIMB 11725 / NRRL B-14509 / 104-1A); SOURCE 5 ORGANISM_TAXID: 521098; SOURCE 6 STRAIN: ATCC 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / SOURCE 7 NRRL B-14509 / 104-1A; SOURCE 8 GENE: AACI_0955; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACYL-COA DEHYDROGENASE BACTERIA FAD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MOON,J.CHOE REVDAT 2 20-MAR-24 5GJ7 1 REMARK REVDAT 1 05-JUL-17 5GJ7 0 JRNL AUTH H.MOON,J.CHOE JRNL TITL PUTATIVE ACYL COA DEHYDROGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 62204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3318 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4484 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 255 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.969 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6168 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5974 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8378 ; 1.667 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13688 ; 1.226 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 772 ; 5.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;34.837 ;22.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1014 ;14.497 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;15.801 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 946 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6964 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1404 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3100 ; 2.666 ; 1.704 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3099 ; 2.666 ; 1.703 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3868 ; 4.121 ; 2.532 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -2 395 B -2 395 48718 0.050 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 395 REMARK 3 ORIGIN FOR THE GROUP (A): 214.7170 76.6060 1.4760 REMARK 3 T TENSOR REMARK 3 T11: 0.0032 T22: 0.0592 REMARK 3 T33: 0.2084 T12: 0.0049 REMARK 3 T13: -0.0108 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.4886 L22: 0.5130 REMARK 3 L33: 1.1695 L12: -0.3328 REMARK 3 L13: -0.4857 L23: 0.3288 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0708 S13: 0.1810 REMARK 3 S21: -0.0083 S22: 0.0135 S23: 0.0346 REMARK 3 S31: -0.0494 S32: -0.1711 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 395 REMARK 3 ORIGIN FOR THE GROUP (A): 214.8850 61.8150 -36.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.1042 REMARK 3 T33: 0.2109 T12: -0.0318 REMARK 3 T13: -0.0238 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.4960 L22: 0.5028 REMARK 3 L33: 1.9188 L12: 0.2536 REMARK 3 L13: 0.6803 L23: 0.2535 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: 0.0838 S13: -0.2005 REMARK 3 S21: -0.0670 S22: 0.0360 S23: 0.0648 REMARK 3 S31: 0.1923 S32: -0.2816 S33: -0.1077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65742 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE 0.1M MES :NAOH REMARK 280 PH6.5 10%(W/V) PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 77.84550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.69200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 77.84550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.69200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 479 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 134 REMARK 465 THR A 135 REMARK 465 GLY A 136 REMARK 465 SER A 137 REMARK 465 PRO A 138 REMARK 465 SER A 139 REMARK 465 ARG A 140 REMARK 465 GLY A 141 REMARK 465 GLY A 142 REMARK 465 LYS A 143 REMARK 465 ALA B 134 REMARK 465 THR B 135 REMARK 465 GLY B 136 REMARK 465 SER B 137 REMARK 465 PRO B 138 REMARK 465 SER B 139 REMARK 465 ARG B 140 REMARK 465 GLY B 141 REMARK 465 GLY B 142 REMARK 465 LYS B 143 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 440 O HOH A 541 1.95 REMARK 500 O THR B 165 OG1 THR B 209 2.00 REMARK 500 O HOH A 523 O HOH A 552 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 34 CD GLU A 34 OE1 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 225 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 MET A 293 CG - SD - CE ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 342 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 MET B 293 CG - SD - CE ANGL. DEV. = -11.6 DEGREES REMARK 500 ASP B 342 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 114.29 -160.67 REMARK 500 THR A 200 -155.06 -112.04 REMARK 500 ALA A 236 -70.46 -164.94 REMARK 500 THR B 200 -156.29 -112.68 REMARK 500 ALA B 236 -68.31 -165.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GJ8 RELATED DB: PDB DBREF 5GJ7 A 1 395 UNP C8WV06 C8WV06_ALIAD 1 395 DBREF 5GJ7 B 1 395 UNP C8WV06 C8WV06_ALIAD 1 395 SEQADV 5GJ7 SER A -2 UNP C8WV06 EXPRESSION TAG SEQADV 5GJ7 ASN A -1 UNP C8WV06 EXPRESSION TAG SEQADV 5GJ7 ALA A 0 UNP C8WV06 EXPRESSION TAG SEQADV 5GJ7 SER B -2 UNP C8WV06 EXPRESSION TAG SEQADV 5GJ7 ASN B -1 UNP C8WV06 EXPRESSION TAG SEQADV 5GJ7 ALA B 0 UNP C8WV06 EXPRESSION TAG SEQRES 1 A 398 SER ASN ALA MET TYR ASP ILE TYR GLY GLU ALA ALA LEU SEQRES 2 A 398 PRO ALA ASP VAL ARG GLU ARG LEU ARG ILE THR ARG ASP SEQRES 3 A 398 LEU ALA GLN ALA PHE HIS GLU ARG ALA PRO GLU HIS ASP SEQRES 4 A 398 ARG ALA GLY ASP PHE PRO PHE GLU ASN ILE GLU ASP LEU SEQRES 5 A 398 LYS ALA SER GLY TYR VAL ARG TRP THR VAL PRO VAL GLU SEQRES 6 A 398 TYR GLY GLY LEU GLY LEU SER LEU GLU GLU MET LEU MET SEQRES 7 A 398 HIS GLN GLU VAL LEU ALA LYS GLY ASP GLY SER THR ALA SEQRES 8 A 398 LEU ALA ILE GLY TRP HIS VAL GLY ILE LEU LEU HIS LEU SEQRES 9 A 398 ARG GLU THR GLY ALA PHE PRO ASP GLU LEU PHE ARG MET SEQRES 10 A 398 VAL CYS GLU SER VAL VAL LYS GLU GLY ALA LEU ILE ASN SEQRES 11 A 398 SER CYS ALA THR GLU PRO ALA THR GLY SER PRO SER ARG SEQRES 12 A 398 GLY GLY LYS PRO GLU THR THR ALA VAL LYS VAL PRO GLY SEQRES 13 A 398 GLY TYR ARG ILE THR GLY ARG LYS THR PHE SER THR LEU SEQRES 14 A 398 SER PRO ALA LEU THR TRP ILE MET VAL THR ALA THR VAL SEQRES 15 A 398 ALA ASP GLU ASP VAL VAL GLY GLN PHE LEU VAL ARG LYS SEQRES 16 A 398 GLU ASP VAL GLU ILE VAL GLU THR TRP ASP THR LEU GLY SEQRES 17 A 398 MET ARG ALA THR GLY SER HIS ASP ILE VAL LEU LYS ASP SEQRES 18 A 398 VAL PHE VAL PRO GLU GLU ARG VAL ILE VAL ILE GLN ARG SEQRES 19 A 398 PRO GLY VAL GLN ALA GLU ARG ARG PRO ASP GLY SER GLY SEQRES 20 A 398 TRP LEU LEU HIS ILE PRO ALA CYS TYR LEU GLY ILE ALA SEQRES 21 A 398 LEU ALA ALA ARG ASP PHE ALA LEU GLU TYR ALA ALA THR SEQRES 22 A 398 TYR ARG PRO ASN THR LEU PRO HIS PRO ILE ALA GLU VAL SEQRES 23 A 398 PRO HIS VAL GLU GLN LYS LEU GLY GLU MET GLU LEU LYS SEQRES 24 A 398 LEU LEU ALA ALA ARG THR LEU LEU TYR ASP LEU ALA ARG SEQRES 25 A 398 ARG PHE ASP ALA ALA SER PRO GLU GLU ARG VAL LYS LEU SEQRES 26 A 398 GLN PRO GLN PHE GLY ALA VAL LYS THR LEU ALA THR ASN SEQRES 27 A 398 ALA ALA ASN GLN VAL VAL ASP LEU ALA MET ARG VAL VAL SEQRES 28 A 398 GLY GLY ARG SER LEU SER ARG ALA LEU PRO LEU GLU ARG SEQRES 29 A 398 TYR TYR ARG ASP VAL ARG ALA GLY LEU HIS ASN PRO PRO SEQRES 30 A 398 MET ASP ASP VAL VAL TYR ARG ASN LEU ALA LYS ALA ALA SEQRES 31 A 398 LEU ALA ARG ARG ALA ALA GLY GLN SEQRES 1 B 398 SER ASN ALA MET TYR ASP ILE TYR GLY GLU ALA ALA LEU SEQRES 2 B 398 PRO ALA ASP VAL ARG GLU ARG LEU ARG ILE THR ARG ASP SEQRES 3 B 398 LEU ALA GLN ALA PHE HIS GLU ARG ALA PRO GLU HIS ASP SEQRES 4 B 398 ARG ALA GLY ASP PHE PRO PHE GLU ASN ILE GLU ASP LEU SEQRES 5 B 398 LYS ALA SER GLY TYR VAL ARG TRP THR VAL PRO VAL GLU SEQRES 6 B 398 TYR GLY GLY LEU GLY LEU SER LEU GLU GLU MET LEU MET SEQRES 7 B 398 HIS GLN GLU VAL LEU ALA LYS GLY ASP GLY SER THR ALA SEQRES 8 B 398 LEU ALA ILE GLY TRP HIS VAL GLY ILE LEU LEU HIS LEU SEQRES 9 B 398 ARG GLU THR GLY ALA PHE PRO ASP GLU LEU PHE ARG MET SEQRES 10 B 398 VAL CYS GLU SER VAL VAL LYS GLU GLY ALA LEU ILE ASN SEQRES 11 B 398 SER CYS ALA THR GLU PRO ALA THR GLY SER PRO SER ARG SEQRES 12 B 398 GLY GLY LYS PRO GLU THR THR ALA VAL LYS VAL PRO GLY SEQRES 13 B 398 GLY TYR ARG ILE THR GLY ARG LYS THR PHE SER THR LEU SEQRES 14 B 398 SER PRO ALA LEU THR TRP ILE MET VAL THR ALA THR VAL SEQRES 15 B 398 ALA ASP GLU ASP VAL VAL GLY GLN PHE LEU VAL ARG LYS SEQRES 16 B 398 GLU ASP VAL GLU ILE VAL GLU THR TRP ASP THR LEU GLY SEQRES 17 B 398 MET ARG ALA THR GLY SER HIS ASP ILE VAL LEU LYS ASP SEQRES 18 B 398 VAL PHE VAL PRO GLU GLU ARG VAL ILE VAL ILE GLN ARG SEQRES 19 B 398 PRO GLY VAL GLN ALA GLU ARG ARG PRO ASP GLY SER GLY SEQRES 20 B 398 TRP LEU LEU HIS ILE PRO ALA CYS TYR LEU GLY ILE ALA SEQRES 21 B 398 LEU ALA ALA ARG ASP PHE ALA LEU GLU TYR ALA ALA THR SEQRES 22 B 398 TYR ARG PRO ASN THR LEU PRO HIS PRO ILE ALA GLU VAL SEQRES 23 B 398 PRO HIS VAL GLU GLN LYS LEU GLY GLU MET GLU LEU LYS SEQRES 24 B 398 LEU LEU ALA ALA ARG THR LEU LEU TYR ASP LEU ALA ARG SEQRES 25 B 398 ARG PHE ASP ALA ALA SER PRO GLU GLU ARG VAL LYS LEU SEQRES 26 B 398 GLN PRO GLN PHE GLY ALA VAL LYS THR LEU ALA THR ASN SEQRES 27 B 398 ALA ALA ASN GLN VAL VAL ASP LEU ALA MET ARG VAL VAL SEQRES 28 B 398 GLY GLY ARG SER LEU SER ARG ALA LEU PRO LEU GLU ARG SEQRES 29 B 398 TYR TYR ARG ASP VAL ARG ALA GLY LEU HIS ASN PRO PRO SEQRES 30 B 398 MET ASP ASP VAL VAL TYR ARG ASN LEU ALA LYS ALA ALA SEQRES 31 B 398 LEU ALA ARG ARG ALA ALA GLY GLN FORMUL 3 HOH *271(H2 O) HELIX 1 AA1 MET A 1 GLY A 6 1 6 HELIX 2 AA2 PRO A 11 GLY A 39 1 29 HELIX 3 AA3 PRO A 42 SER A 52 1 11 HELIX 4 AA4 GLY A 53 TRP A 57 5 5 HELIX 5 AA5 PRO A 60 GLY A 64 5 5 HELIX 6 AA6 SER A 69 ASP A 84 1 16 HELIX 7 AA7 ASP A 84 GLY A 105 1 22 HELIX 8 AA8 PRO A 108 GLY A 123 1 16 HELIX 9 AA9 LEU A 166 LEU A 170 5 5 HELIX 10 AB1 GLU A 193 VAL A 195 5 3 HELIX 11 AB2 SER A 243 LEU A 246 5 4 HELIX 12 AB3 LEU A 247 TYR A 271 1 25 HELIX 13 AB4 PRO A 279 GLU A 282 5 4 HELIX 14 AB5 VAL A 283 ALA A 314 1 32 HELIX 15 AB6 SER A 315 LEU A 322 1 8 HELIX 16 AB7 LEU A 322 GLY A 349 1 28 HELIX 17 AB8 GLY A 350 SER A 354 5 5 HELIX 18 AB9 PRO A 358 ARG A 367 1 10 HELIX 19 AC1 ALA A 368 HIS A 371 5 4 HELIX 20 AC2 MET A 375 GLY A 394 1 20 HELIX 21 AC3 MET B 1 GLY B 6 1 6 HELIX 22 AC4 PRO B 11 GLY B 39 1 29 HELIX 23 AC5 PRO B 42 GLY B 53 1 12 HELIX 24 AC6 TYR B 54 TRP B 57 5 4 HELIX 25 AC7 PRO B 60 GLY B 64 5 5 HELIX 26 AC8 SER B 69 ASP B 84 1 16 HELIX 27 AC9 ASP B 84 GLY B 105 1 22 HELIX 28 AD1 PRO B 108 GLY B 123 1 16 HELIX 29 AD2 LEU B 166 LEU B 170 5 5 HELIX 30 AD3 GLU B 193 VAL B 195 5 3 HELIX 31 AD4 SER B 243 LEU B 246 5 4 HELIX 32 AD5 LEU B 247 TYR B 271 1 25 HELIX 33 AD6 PRO B 279 GLU B 282 5 4 HELIX 34 AD7 VAL B 283 ALA B 314 1 32 HELIX 35 AD8 SER B 315 LEU B 322 1 8 HELIX 36 AD9 LEU B 322 GLY B 349 1 28 HELIX 37 AE1 GLY B 350 SER B 354 5 5 HELIX 38 AE2 PRO B 358 ARG B 367 1 10 HELIX 39 AE3 ALA B 368 HIS B 371 5 4 HELIX 40 AE4 MET B 375 GLY B 394 1 20 SHEET 1 AA1 6 ILE A 126 CYS A 129 0 SHEET 2 AA1 6 TRP A 172 VAL A 179 1 O MET A 174 N CYS A 129 SHEET 3 AA1 6 THR A 147 VAL A 151 1 N ALA A 148 O THR A 178 SHEET 4 AA1 6 GLY A 154 LYS A 161 -1 O THR A 158 N THR A 147 SHEET 5 AA1 6 HIS A 212 PRO A 222 -1 O VAL A 221 N TYR A 155 SHEET 6 AA1 6 GLU A 196 GLU A 199 -1 N GLU A 196 O VAL A 215 SHEET 1 AA2 4 ILE A 126 CYS A 129 0 SHEET 2 AA2 4 TRP A 172 VAL A 179 1 O MET A 174 N CYS A 129 SHEET 3 AA2 4 VAL A 185 ARG A 191 -1 O GLY A 186 N ALA A 177 SHEET 4 AA2 4 VAL A 226 GLN A 230 -1 O GLN A 230 N VAL A 185 SHEET 1 AA3 6 ILE B 126 CYS B 129 0 SHEET 2 AA3 6 TRP B 172 VAL B 179 1 O MET B 174 N CYS B 129 SHEET 3 AA3 6 THR B 147 VAL B 151 1 N ALA B 148 O THR B 178 SHEET 4 AA3 6 GLY B 154 LYS B 161 -1 O THR B 158 N THR B 147 SHEET 5 AA3 6 HIS B 212 PRO B 222 -1 O VAL B 221 N TYR B 155 SHEET 6 AA3 6 GLU B 196 GLU B 199 -1 N GLU B 196 O VAL B 215 SHEET 1 AA4 4 ILE B 126 CYS B 129 0 SHEET 2 AA4 4 TRP B 172 VAL B 179 1 O MET B 174 N CYS B 129 SHEET 3 AA4 4 VAL B 185 ARG B 191 -1 O GLY B 186 N ALA B 177 SHEET 4 AA4 4 VAL B 226 GLN B 230 -1 O GLN B 230 N VAL B 185 CISPEP 1 VAL A 234 GLN A 235 0 -9.82 CISPEP 2 PRO A 373 PRO A 374 0 -1.10 CISPEP 3 VAL B 234 GLN B 235 0 -9.70 CISPEP 4 PRO B 373 PRO B 374 0 -1.05 CRYST1 155.691 69.384 83.255 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012011 0.00000