HEADER CHAPERONE 04-JUL-16 5GKM TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF CASEINOLYTIC PROTEASE TITLE 2 ASSOCIATED CHAPERONE CLPD FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AT5G51070/K3K7_27; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 79-233; COMPND 5 SYNONYM: ATCLPD; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS CHAPERONE, PROTEASE, CLP EXPDTA X-RAY DIFFRACTION AUTHOR C.MOHAPATRA,D.VASUDEVAN REVDAT 3 08-NOV-23 5GKM 1 REMARK REVDAT 2 01-JAN-20 5GKM 1 JRNL REVDAT 1 22-MAR-17 5GKM 0 JRNL AUTH C.MOHAPATRA,M.KUMAR JAGDEV,D.VASUDEVAN JRNL TITL CRYSTAL STRUCTURES REVEAL N-TERMINAL DOMAIN OF ARABIDOPSIS JRNL TITL 2 THALIANA CLPD TO BE HIGHLY DIVERGENT FROM THAT OF CLPC1. JRNL REF SCI REP V. 7 44366 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28287170 JRNL DOI 10.1038/SREP44366 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1771 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2573 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2301 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2348 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2229 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3172 ; 1.706 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5159 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.749 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;34.456 ;23.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;12.341 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;22.165 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2619 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 497 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1184 ; 1.584 ; 1.373 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1183 ; 1.579 ; 1.371 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1477 ; 2.042 ; 2.048 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1478 ; 2.041 ; 2.049 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1164 ; 2.961 ; 1.688 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1165 ; 2.960 ; 1.689 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1687 ; 4.089 ; 2.406 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2765 ; 4.851 ;16.973 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2762 ; 4.835 ;16.959 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 80 230 B 80 230 9166 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1331 19.7251 62.3465 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.0184 REMARK 3 T33: 0.0011 T12: -0.0164 REMARK 3 T13: -0.0014 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.1148 L22: 1.0578 REMARK 3 L33: 1.4626 L12: -0.0774 REMARK 3 L13: -0.3314 L23: -0.3383 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: 0.0100 S13: 0.0035 REMARK 3 S21: -0.0241 S22: 0.0316 S23: 0.0141 REMARK 3 S31: -0.0222 S32: -0.0507 S33: 0.0235 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 331 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7028 9.1202 88.1740 REMARK 3 T TENSOR REMARK 3 T11: 0.0271 T22: 0.0498 REMARK 3 T33: 0.0228 T12: 0.0225 REMARK 3 T13: 0.0229 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.8534 L22: 0.9265 REMARK 3 L33: 3.4445 L12: 0.2672 REMARK 3 L13: -1.3267 L23: -0.3299 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: 0.0246 S13: -0.0818 REMARK 3 S21: 0.0277 S22: 0.0189 S23: 0.0382 REMARK 3 S31: -0.0542 S32: -0.1736 S33: -0.0028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300000945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.1.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37033 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5CTZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(V/V) 2-PROPANOL, 20%(W/V) PEG MME REMARK 280 2000, 100 MM MES MONOHYDRATE, PH 6.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.65500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 74 REMARK 465 SER A 156 REMARK 465 SER A 157 REMARK 465 THR A 158 REMARK 465 SER A 159 REMARK 465 GLU A 233 REMARK 465 PRO B 74 REMARK 465 LEU B 75 REMARK 465 GLY B 76 REMARK 465 SER B 77 REMARK 465 MET B 78 REMARK 465 LYS B 151 REMARK 465 GLN B 152 REMARK 465 GLU B 153 REMARK 465 GLU B 154 REMARK 465 ALA B 155 REMARK 465 SER B 156 REMARK 465 SER B 157 REMARK 465 THR B 158 REMARK 465 SER B 159 REMARK 465 TYR B 160 REMARK 465 SER B 161 REMARK 465 GLY B 232 REMARK 465 GLU B 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 231 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 133 O HOH A 301 1.83 REMARK 500 O HOH A 344 O HOH A 374 2.12 REMARK 500 OG SER A 77 O HOH A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 77 ND2 ASN B 218 1655 1.60 REMARK 500 O HOH B 326 O HOH B 337 2557 1.82 REMARK 500 O HOH B 305 O HOH B 314 2547 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 153 CD GLU A 153 OE1 -0.066 REMARK 500 GLU A 154 CD GLU A 154 OE1 -0.072 REMARK 500 SER A 171 N SER A 171 CA 0.135 REMARK 500 SER A 171 N SER A 171 CA 0.143 REMARK 500 GLU A 194 CD GLU A 194 OE2 -0.072 REMARK 500 SER B 94 N SER B 94 CA 0.127 REMARK 500 SER B 94 N SER B 94 CA 0.133 REMARK 500 SER B 94 C SER B 94 O -0.115 REMARK 500 PHE B 125 C PHE B 125 O -0.117 REMARK 500 GLU B 181 CD GLU B 181 OE1 -0.072 REMARK 500 GLU B 194 CD GLU B 194 OE2 -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 188 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 89 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 18.63 58.89 REMARK 500 ALA A 146 -132.80 -128.66 REMARK 500 ALA B 146 -133.83 -136.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 166 13.98 REMARK 500 MET A 166 13.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GUI RELATED DB: PDB DBREF 5GKM A 79 233 UNP Q94C10 Q94C10_ARATH 79 233 DBREF 5GKM B 79 233 UNP Q94C10 Q94C10_ARATH 79 233 SEQADV 5GKM PRO A 74 UNP Q94C10 EXPRESSION TAG SEQADV 5GKM LEU A 75 UNP Q94C10 EXPRESSION TAG SEQADV 5GKM GLY A 76 UNP Q94C10 EXPRESSION TAG SEQADV 5GKM SER A 77 UNP Q94C10 EXPRESSION TAG SEQADV 5GKM MET A 78 UNP Q94C10 EXPRESSION TAG SEQADV 5GKM PRO B 74 UNP Q94C10 EXPRESSION TAG SEQADV 5GKM LEU B 75 UNP Q94C10 EXPRESSION TAG SEQADV 5GKM GLY B 76 UNP Q94C10 EXPRESSION TAG SEQADV 5GKM SER B 77 UNP Q94C10 EXPRESSION TAG SEQADV 5GKM MET B 78 UNP Q94C10 EXPRESSION TAG SEQRES 1 A 160 PRO LEU GLY SER MET VAL PHE GLU ARG PHE THR GLU ARG SEQRES 2 A 160 ALA ILE ARG ALA ILE ILE PHE SER GLN LYS GLU ALA LYS SEQRES 3 A 160 SER LEU GLY LYS ASP MET VAL TYR THR GLN HIS LEU LEU SEQRES 4 A 160 LEU GLY LEU ILE ALA GLU ASP ARG ASP PRO GLN GLY PHE SEQRES 5 A 160 LEU GLY SER GLY ILE THR ILE ASP LYS ALA ARG GLU ALA SEQRES 6 A 160 VAL TRP SER ILE TRP ASP GLU ALA ASN SER ASP SER LYS SEQRES 7 A 160 GLN GLU GLU ALA SER SER THR SER TYR SER LYS SER THR SEQRES 8 A 160 ASP MET PRO PHE SER ILE SER THR LYS ARG VAL PHE GLU SEQRES 9 A 160 ALA ALA VAL GLU TYR SER ARG THR MET ASP CYS GLN TYR SEQRES 10 A 160 ILE ALA PRO GLU HIS ILE ALA VAL GLY LEU PHE THR VAL SEQRES 11 A 160 ASP ASP GLY SER ALA GLY ARG VAL LEU LYS ARG LEU GLY SEQRES 12 A 160 ALA ASN MET ASN LEU LEU THR ALA ALA ALA LEU THR ARG SEQRES 13 A 160 LEU LYS GLY GLU SEQRES 1 B 160 PRO LEU GLY SER MET VAL PHE GLU ARG PHE THR GLU ARG SEQRES 2 B 160 ALA ILE ARG ALA ILE ILE PHE SER GLN LYS GLU ALA LYS SEQRES 3 B 160 SER LEU GLY LYS ASP MET VAL TYR THR GLN HIS LEU LEU SEQRES 4 B 160 LEU GLY LEU ILE ALA GLU ASP ARG ASP PRO GLN GLY PHE SEQRES 5 B 160 LEU GLY SER GLY ILE THR ILE ASP LYS ALA ARG GLU ALA SEQRES 6 B 160 VAL TRP SER ILE TRP ASP GLU ALA ASN SER ASP SER LYS SEQRES 7 B 160 GLN GLU GLU ALA SER SER THR SER TYR SER LYS SER THR SEQRES 8 B 160 ASP MET PRO PHE SER ILE SER THR LYS ARG VAL PHE GLU SEQRES 9 B 160 ALA ALA VAL GLU TYR SER ARG THR MET ASP CYS GLN TYR SEQRES 10 B 160 ILE ALA PRO GLU HIS ILE ALA VAL GLY LEU PHE THR VAL SEQRES 11 B 160 ASP ASP GLY SER ALA GLY ARG VAL LEU LYS ARG LEU GLY SEQRES 12 B 160 ALA ASN MET ASN LEU LEU THR ALA ALA ALA LEU THR ARG SEQRES 13 B 160 LEU LYS GLY GLU FORMUL 3 HOH *120(H2 O) HELIX 1 AA1 THR A 84 LEU A 101 1 18 HELIX 2 AA2 TYR A 107 ASP A 119 1 13 HELIX 3 AA3 GLY A 124 SER A 128 5 5 HELIX 4 AA4 THR A 131 GLU A 145 1 15 HELIX 5 AA5 LYS A 162 MET A 166 5 5 HELIX 6 AA6 SER A 169 MET A 186 1 18 HELIX 7 AA7 ALA A 192 ASP A 204 1 13 HELIX 8 AA8 GLY A 206 GLY A 216 1 11 HELIX 9 AA9 ASN A 218 GLY A 232 1 15 HELIX 10 AB1 VAL B 79 PHE B 83 5 5 HELIX 11 AB2 THR B 84 LEU B 101 1 18 HELIX 12 AB3 TYR B 107 ASP B 119 1 13 HELIX 13 AB4 GLY B 124 SER B 128 5 5 HELIX 14 AB5 THR B 131 GLU B 145 1 15 HELIX 15 AB6 LYS B 162 MET B 166 5 5 HELIX 16 AB7 SER B 169 MET B 186 1 18 HELIX 17 AB8 ALA B 192 PHE B 201 1 10 HELIX 18 AB9 GLY B 206 LEU B 215 1 10 HELIX 19 AC1 ASN B 218 LYS B 231 1 14 CRYST1 38.080 37.310 99.980 90.00 96.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026261 0.000000 0.002797 0.00000 SCALE2 0.000000 0.026802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010059 0.00000