HEADER HYDROLASE 20-JUL-16 5GNE TITLE CRYSTAL STRUCTURE OF LAPB FROM LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE AMINOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 24-397; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 272624; SOURCE 4 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 5 GENE: LPG0032; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA KEYWDS AMINOPEPTIDASE, LEGIONELLA PNEUMOPHILA, PA DOMAIN, AUTOINHIBITION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHANG,H.GE REVDAT 4 08-NOV-23 5GNE 1 REMARK LINK REVDAT 3 17-OCT-18 5GNE 1 REMARK REVDAT 2 06-DEC-17 5GNE 1 JRNL REVDAT 1 30-AUG-17 5GNE 0 JRNL AUTH N.ZHANG,S.YIN,W.ZHANG,X.GONG,N.ZHANG,K.FANG,H.GE JRNL TITL CRYSTAL STRUCTURE AND BIOCHEMICAL CHARACTERIZATION OF AN JRNL TITL 2 AMINOPEPTIDASE LAPB FROM LEGIONELLA PNEUMOPHILA. JRNL REF J. AGRIC. FOOD CHEM. V. 65 7569 2017 JRNL REFN ESSN 1520-5118 JRNL PMID 28776986 JRNL DOI 10.1021/ACS.JAFC.7B02849 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 42787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4696 - 6.1617 0.99 3070 150 0.1603 0.1933 REMARK 3 2 6.1617 - 4.8922 1.00 2932 145 0.1605 0.2019 REMARK 3 3 4.8922 - 4.2742 1.00 2899 127 0.1354 0.1587 REMARK 3 4 4.2742 - 3.8836 0.88 2536 142 0.1492 0.2178 REMARK 3 5 3.8836 - 3.6053 0.86 2461 114 0.1775 0.2119 REMARK 3 6 3.6053 - 3.3928 0.82 2335 128 0.2012 0.2436 REMARK 3 7 3.3928 - 3.2229 1.00 2847 149 0.2156 0.2785 REMARK 3 8 3.2229 - 3.0827 1.00 2811 156 0.2104 0.2484 REMARK 3 9 3.0827 - 2.9640 1.00 2811 154 0.2201 0.2799 REMARK 3 10 2.9640 - 2.8617 1.00 2838 135 0.2146 0.2403 REMARK 3 11 2.8617 - 2.7723 1.00 2785 164 0.2277 0.2920 REMARK 3 12 2.7723 - 2.6930 1.00 2828 133 0.2208 0.2807 REMARK 3 13 2.6930 - 2.6221 0.70 1966 109 0.2448 0.3258 REMARK 3 14 2.6221 - 2.5582 1.00 2783 161 0.2352 0.2788 REMARK 3 15 2.5582 - 2.5000 1.00 2764 154 0.2555 0.3202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5982 REMARK 3 ANGLE : 1.410 8114 REMARK 3 CHIRALITY : 0.066 905 REMARK 3 PLANARITY : 0.007 1048 REMARK 3 DIHEDRAL : 15.393 2186 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7402 -7.9143 -23.6518 REMARK 3 T TENSOR REMARK 3 T11: 0.2618 T22: 0.3414 REMARK 3 T33: 0.4713 T12: 0.0351 REMARK 3 T13: -0.0126 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 5.5046 L22: 2.0243 REMARK 3 L33: 2.5717 L12: 0.2700 REMARK 3 L13: -0.8900 L23: 0.3827 REMARK 3 S TENSOR REMARK 3 S11: -0.1110 S12: -0.1726 S13: 0.2147 REMARK 3 S21: 0.2790 S22: -0.1637 S23: -0.0597 REMARK 3 S31: 0.1370 S32: 0.1408 S33: 0.1430 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6216 -23.8942 -52.6111 REMARK 3 T TENSOR REMARK 3 T11: 0.3797 T22: 0.4138 REMARK 3 T33: 0.4160 T12: 0.0965 REMARK 3 T13: 0.1503 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.4567 L22: 0.8575 REMARK 3 L33: 6.3891 L12: 0.4331 REMARK 3 L13: 1.7555 L23: 2.2985 REMARK 3 S TENSOR REMARK 3 S11: -0.4059 S12: -0.0516 S13: 0.1292 REMARK 3 S21: -0.9784 S22: -0.1329 S23: 0.0212 REMARK 3 S31: -0.2499 S32: -0.0770 S33: 0.5103 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3983 -26.2048 -38.5621 REMARK 3 T TENSOR REMARK 3 T11: 0.3028 T22: 0.2964 REMARK 3 T33: 0.4172 T12: -0.0249 REMARK 3 T13: 0.1629 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.8271 L22: 1.6613 REMARK 3 L33: 4.2243 L12: 0.7975 REMARK 3 L13: 1.0766 L23: 1.5425 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -0.2833 S13: -0.0394 REMARK 3 S21: -0.0352 S22: -0.2722 S23: -0.0669 REMARK 3 S31: 0.2742 S32: -0.5939 S33: 0.1471 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9079 -13.1314 -43.2990 REMARK 3 T TENSOR REMARK 3 T11: 0.2299 T22: 0.7020 REMARK 3 T33: 0.5261 T12: 0.1583 REMARK 3 T13: 0.0290 T23: 0.3809 REMARK 3 L TENSOR REMARK 3 L11: 3.6328 L22: 3.1982 REMARK 3 L33: 3.3482 L12: -1.3305 REMARK 3 L13: 0.2386 L23: 0.1805 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.2921 S13: 0.1055 REMARK 3 S21: -0.0816 S22: -0.0928 S23: -0.1901 REMARK 3 S31: 0.3361 S32: 0.6342 S33: 0.0677 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1586 -21.8673 -22.8524 REMARK 3 T TENSOR REMARK 3 T11: 0.4625 T22: 0.7723 REMARK 3 T33: 0.5456 T12: 0.1880 REMARK 3 T13: 0.0333 T23: 0.2343 REMARK 3 L TENSOR REMARK 3 L11: 2.4708 L22: 2.3569 REMARK 3 L33: 1.2406 L12: -1.5480 REMARK 3 L13: 1.2574 L23: -0.8955 REMARK 3 S TENSOR REMARK 3 S11: -0.3950 S12: -0.3659 S13: 0.2169 REMARK 3 S21: 0.5663 S22: 0.3013 S23: -0.1187 REMARK 3 S31: 0.0384 S32: 0.1587 S33: -0.0461 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 154 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6922 -29.5659 -19.0555 REMARK 3 T TENSOR REMARK 3 T11: 0.6274 T22: 1.1156 REMARK 3 T33: 0.5484 T12: 0.5427 REMARK 3 T13: 0.1041 T23: 0.5654 REMARK 3 L TENSOR REMARK 3 L11: 2.1415 L22: 1.7513 REMARK 3 L33: 2.5975 L12: -0.9418 REMARK 3 L13: 0.3330 L23: -0.3652 REMARK 3 S TENSOR REMARK 3 S11: -0.2932 S12: -0.5531 S13: -0.2412 REMARK 3 S21: 0.5882 S22: 0.5027 S23: 0.3425 REMARK 3 S31: 0.0698 S32: -0.4607 S33: -0.2860 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 287 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.8681 -18.0661 -17.8075 REMARK 3 T TENSOR REMARK 3 T11: 0.8264 T22: 0.9621 REMARK 3 T33: 0.7047 T12: 0.2862 REMARK 3 T13: -0.2407 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.6876 L22: 3.4905 REMARK 3 L33: 7.3903 L12: 2.2356 REMARK 3 L13: 1.0679 L23: 1.1081 REMARK 3 S TENSOR REMARK 3 S11: -0.3089 S12: 0.0205 S13: 0.6430 REMARK 3 S21: 0.2622 S22: 0.0867 S23: -0.3758 REMARK 3 S31: -0.7241 S32: 0.6979 S33: 0.2071 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 323 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6512 -16.0444 -20.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.8040 T22: 0.8041 REMARK 3 T33: 0.6803 T12: 0.3514 REMARK 3 T13: -0.2082 T23: 0.1020 REMARK 3 L TENSOR REMARK 3 L11: 3.4137 L22: 1.0740 REMARK 3 L33: 5.2302 L12: 0.9713 REMARK 3 L13: 2.2235 L23: -0.4310 REMARK 3 S TENSOR REMARK 3 S11: -0.2929 S12: 0.1725 S13: 0.6473 REMARK 3 S21: 0.2152 S22: 0.2140 S23: -0.0313 REMARK 3 S31: -0.7458 S32: 0.2574 S33: 0.1010 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 357 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.8152 -27.8921 -31.7305 REMARK 3 T TENSOR REMARK 3 T11: 0.5606 T22: 1.0439 REMARK 3 T33: 0.6349 T12: 0.2499 REMARK 3 T13: -0.0626 T23: 0.1210 REMARK 3 L TENSOR REMARK 3 L11: 1.2228 L22: 0.9922 REMARK 3 L33: 5.4031 L12: -1.0736 REMARK 3 L13: 2.4790 L23: -2.0429 REMARK 3 S TENSOR REMARK 3 S11: -0.2158 S12: 0.1148 S13: 0.4435 REMARK 3 S21: 0.1491 S22: 0.1088 S23: -0.9027 REMARK 3 S31: -0.4778 S32: 1.0431 S33: 0.1381 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 377 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2418 -25.5145 -10.4218 REMARK 3 T TENSOR REMARK 3 T11: 0.8824 T22: 0.9403 REMARK 3 T33: 0.4925 T12: 0.5484 REMARK 3 T13: -0.1651 T23: 0.0804 REMARK 3 L TENSOR REMARK 3 L11: 4.2077 L22: 6.2217 REMARK 3 L33: 4.3431 L12: -1.8946 REMARK 3 L13: 0.8974 L23: 0.0025 REMARK 3 S TENSOR REMARK 3 S11: -0.4078 S12: -0.4787 S13: 0.3280 REMARK 3 S21: 1.0489 S22: 0.4737 S23: -0.1895 REMARK 3 S31: -0.3774 S32: -0.1991 S33: -0.0495 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300001104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42854 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 17.40 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1AMP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE PH 6.0, 0.32 M AMMONIUM SULFATE, 1.0 M LITHIUM SULFATE REMARK 280 MONOHYDRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 76.48500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 76.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.20500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 76.48500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 76.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.20500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 76.48500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.48500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.20500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 76.48500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.48500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.20500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 PRO A 27 REMARK 465 SER A 111 REMARK 465 THR A 112 REMARK 465 ALA A 113 REMARK 465 ASN A 114 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 PRO B 27 REMARK 465 SER B 111 REMARK 465 THR B 112 REMARK 465 ALA B 113 REMARK 465 ASN B 114 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 84 OH TYR A 269 2.12 REMARK 500 NH1 ARG B 250 O LEU B 394 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 88 59.93 38.98 REMARK 500 GLN A 89 -6.22 78.03 REMARK 500 ASN A 119 18.16 -144.43 REMARK 500 ARG A 262 59.34 -118.98 REMARK 500 GLN A 289 86.18 62.98 REMARK 500 ALA A 296 -9.61 -54.11 REMARK 500 GLN A 299 -1.85 61.00 REMARK 500 GLN B 88 -125.15 46.61 REMARK 500 SER B 109 -7.75 -54.97 REMARK 500 ARG B 262 62.03 -118.53 REMARK 500 GLN B 289 82.15 60.81 REMARK 500 ALA B 296 -7.04 -57.30 REMARK 500 GLN B 299 1.97 57.98 REMARK 500 LYS B 325 60.91 39.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 213 NE2 REMARK 620 2 ASP A 226 OD1 87.0 REMARK 620 3 ASP A 288 OD1 96.7 98.0 REMARK 620 4 ASP A 288 OD2 100.5 154.9 57.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 226 OD2 REMARK 620 2 GLU A 261 OE2 72.1 REMARK 620 3 HIS A 366 NE2 72.2 67.3 REMARK 620 4 HOH A 529 O 125.1 149.5 138.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 213 NE2 REMARK 620 2 ASP B 226 OD1 90.9 REMARK 620 3 ASP B 288 OD1 91.5 100.5 REMARK 620 4 ASP B 288 OD2 105.2 152.5 57.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 226 OD2 REMARK 620 2 GLU B 261 OE2 67.4 REMARK 620 3 HIS B 366 NE2 71.2 76.4 REMARK 620 4 HOH B 509 O 137.2 140.1 134.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 DBREF 5GNE A 24 397 UNP Q5ZZH8 Q5ZZH8_LEGPH 24 397 DBREF 5GNE B 24 397 UNP Q5ZZH8 Q5ZZH8_LEGPH 24 397 SEQADV 5GNE GLY A 23 UNP Q5ZZH8 EXPRESSION TAG SEQADV 5GNE GLY B 23 UNP Q5ZZH8 EXPRESSION TAG SEQRES 1 A 375 GLY SER GLN SER PRO GLU GLU ASP ARG ILE ILE VAL SER SEQRES 2 A 375 ASN CYS LEU TYR GLU GLN LEU LYS ASP LYS ALA ARG LEU SEQRES 3 A 375 ILE ALA GLN SER ASP HIS PHE SER PHE ILE ALA ILE PRO SEQRES 4 A 375 ILE ASP GLU ASN ILE THR ASN THR LEU GLN LYS MET ARG SEQRES 5 A 375 PRO VAL CYS GLY ASN TYR LEU ASN ALA GLU PRO TYR ILE SEQRES 6 A 375 GLN GLN THR SER ASN ARG PHE LEU ASP SER LYS LYS LEU SEQRES 7 A 375 LEU ASP LYS LEU THR SER TYR HIS SER ILE SER THR ALA SEQRES 8 A 375 ASN PRO TYR PRO ILE ASN HIS GLU ALA GLN VAL HIS SER SEQRES 9 A 375 LEU PHE GLU GLN ILE ASP PRO ALA LYS ILE TRP GLN THR SEQRES 10 A 375 ASN GLN HIS LEU THR SER TYR ILE ASN ARG SER ALA LYS SEQRES 11 A 375 SER ARG THR GLY VAL GLU ALA ALA GLN TRP PHE LYS GLN SEQRES 12 A 375 GLN PHE ASP THR LEU ALA GLN ASP TYR GLY ARG LYS ASP SEQRES 13 A 375 VAL GLU SER TYR PHE VAL LYS THR GLY ASN LYS PHE ILE SEQRES 14 A 375 GLN PRO SER VAL VAL THR VAL ILE GLY LYS ASP LYS PRO SEQRES 15 A 375 GLY GLU ALA ILE VAL ILE GLY ALA HIS ILE ASP THR LEU SEQRES 16 A 375 ASP GLY ASN MET PRO GLY ALA ASP ASP ASP SER SER GLY SEQRES 17 A 375 ILE SER VAL GLU LEU GLU MET ALA ARG VAL VAL PHE SER SEQRES 18 A 375 SER ASN PHE GLU LEU ASN ARG PRO ILE TYR PHE ILE ALA SEQRES 19 A 375 TYR ALA ALA GLU GLU ARG GLY LEU ILE GLY SER GLY TYR SEQRES 20 A 375 VAL VAL GLN ASP PHE LEU GLN LYS LYS ILE PRO VAL LYS SEQRES 21 A 375 ALA VAL MET GLN LEU ASP GLN ALA GLY TYR ARG ALA ASN SEQRES 22 A 375 ALA LYS ASP GLN THR ILE TRP LEU LEU LYS ASP TYR VAL SEQRES 23 A 375 ASP LYS GLY LEU THR GLU PHE THR ALA GLU LEU LEU THR SEQRES 24 A 375 ARG TYR VAL LYS THR PRO VAL GLY TYR THR LYS CYS GLY SEQRES 25 A 375 TYR ALA CYS SER ASP HIS VAL ASN TRP THR ASN GLU GLY SEQRES 26 A 375 PHE LYS THR THR TYR PRO SER ALA THR THR LEU ASP ASP SEQRES 27 A 375 ASP ASN PRO TYR VAL HIS THR SER ASN ASP THR LEU ASP SEQRES 28 A 375 ILE LEU ASN LEU GLU HIS MET VAL ASN PHE THR LYS LEU SEQRES 29 A 375 GLY LEU ALA PHE ILE VAL GLU LEU GLY LEU ASN SEQRES 1 B 375 GLY SER GLN SER PRO GLU GLU ASP ARG ILE ILE VAL SER SEQRES 2 B 375 ASN CYS LEU TYR GLU GLN LEU LYS ASP LYS ALA ARG LEU SEQRES 3 B 375 ILE ALA GLN SER ASP HIS PHE SER PHE ILE ALA ILE PRO SEQRES 4 B 375 ILE ASP GLU ASN ILE THR ASN THR LEU GLN LYS MET ARG SEQRES 5 B 375 PRO VAL CYS GLY ASN TYR LEU ASN ALA GLU PRO TYR ILE SEQRES 6 B 375 GLN GLN THR SER ASN ARG PHE LEU ASP SER LYS LYS LEU SEQRES 7 B 375 LEU ASP LYS LEU THR SER TYR HIS SER ILE SER THR ALA SEQRES 8 B 375 ASN PRO TYR PRO ILE ASN HIS GLU ALA GLN VAL HIS SER SEQRES 9 B 375 LEU PHE GLU GLN ILE ASP PRO ALA LYS ILE TRP GLN THR SEQRES 10 B 375 ASN GLN HIS LEU THR SER TYR ILE ASN ARG SER ALA LYS SEQRES 11 B 375 SER ARG THR GLY VAL GLU ALA ALA GLN TRP PHE LYS GLN SEQRES 12 B 375 GLN PHE ASP THR LEU ALA GLN ASP TYR GLY ARG LYS ASP SEQRES 13 B 375 VAL GLU SER TYR PHE VAL LYS THR GLY ASN LYS PHE ILE SEQRES 14 B 375 GLN PRO SER VAL VAL THR VAL ILE GLY LYS ASP LYS PRO SEQRES 15 B 375 GLY GLU ALA ILE VAL ILE GLY ALA HIS ILE ASP THR LEU SEQRES 16 B 375 ASP GLY ASN MET PRO GLY ALA ASP ASP ASP SER SER GLY SEQRES 17 B 375 ILE SER VAL GLU LEU GLU MET ALA ARG VAL VAL PHE SER SEQRES 18 B 375 SER ASN PHE GLU LEU ASN ARG PRO ILE TYR PHE ILE ALA SEQRES 19 B 375 TYR ALA ALA GLU GLU ARG GLY LEU ILE GLY SER GLY TYR SEQRES 20 B 375 VAL VAL GLN ASP PHE LEU GLN LYS LYS ILE PRO VAL LYS SEQRES 21 B 375 ALA VAL MET GLN LEU ASP GLN ALA GLY TYR ARG ALA ASN SEQRES 22 B 375 ALA LYS ASP GLN THR ILE TRP LEU LEU LYS ASP TYR VAL SEQRES 23 B 375 ASP LYS GLY LEU THR GLU PHE THR ALA GLU LEU LEU THR SEQRES 24 B 375 ARG TYR VAL LYS THR PRO VAL GLY TYR THR LYS CYS GLY SEQRES 25 B 375 TYR ALA CYS SER ASP HIS VAL ASN TRP THR ASN GLU GLY SEQRES 26 B 375 PHE LYS THR THR TYR PRO SER ALA THR THR LEU ASP ASP SEQRES 27 B 375 ASP ASN PRO TYR VAL HIS THR SER ASN ASP THR LEU ASP SEQRES 28 B 375 ILE LEU ASN LEU GLU HIS MET VAL ASN PHE THR LYS LEU SEQRES 29 B 375 GLY LEU ALA PHE ILE VAL GLU LEU GLY LEU ASN HET ZN A 401 1 HET ZN A 402 1 HET SO4 A 403 5 HET ZN B 401 1 HET ZN B 402 1 HET SO4 B 403 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *46(H2 O) HELIX 1 AA1 ASN A 36 LYS A 43 1 8 HELIX 2 AA2 ASP A 44 ALA A 46 5 3 HELIX 3 AA3 ASP A 63 GLY A 78 1 16 HELIX 4 AA4 ALA A 83 GLN A 88 1 6 HELIX 5 AA5 SER A 91 LEU A 95 5 5 HELIX 6 AA6 ASP A 96 LEU A 104 1 9 HELIX 7 AA7 HIS A 120 GLU A 129 1 10 HELIX 8 AA8 ASP A 132 TYR A 146 1 15 HELIX 9 AA9 SER A 153 TYR A 174 1 22 HELIX 10 AB1 ASP A 227 SER A 244 1 18 HELIX 11 AB2 LEU A 264 LYS A 277 1 14 HELIX 12 AB3 ASP A 309 TYR A 323 1 15 HELIX 13 AB4 ASP A 339 GLU A 346 1 8 HELIX 14 AB5 THR A 371 LEU A 375 5 5 HELIX 15 AB6 ASN A 376 LEU A 396 1 21 HELIX 16 AB7 ASN B 36 LYS B 43 1 8 HELIX 17 AB8 ASP B 44 ALA B 46 5 3 HELIX 18 AB9 ASP B 63 MET B 73 1 11 HELIX 19 AC1 MET B 73 GLY B 78 1 6 HELIX 20 AC2 ALA B 83 GLN B 88 1 6 HELIX 21 AC3 SER B 91 LEU B 95 5 5 HELIX 22 AC4 ASP B 96 LEU B 104 1 9 HELIX 23 AC5 HIS B 120 GLU B 129 1 10 HELIX 24 AC6 ASP B 132 THR B 144 1 13 HELIX 25 AC7 SER B 153 TYR B 174 1 22 HELIX 26 AC8 ASP B 227 ASN B 245 1 19 HELIX 27 AC9 LEU B 264 LYS B 277 1 14 HELIX 28 AD1 ASP B 309 TYR B 323 1 15 HELIX 29 AD2 ASP B 339 GLU B 346 1 8 HELIX 30 AD3 THR B 371 LEU B 375 5 5 HELIX 31 AD4 ASN B 376 LEU B 396 1 21 SHEET 1 AA1 4 ARG A 47 GLN A 51 0 SHEET 2 AA1 4 PHE A 55 ILE A 60 -1 O PHE A 57 N ALA A 50 SHEET 3 AA1 4 ASP A 30 SER A 35 -1 N ILE A 32 O ILE A 58 SHEET 4 AA1 4 LEU A 81 ASN A 82 -1 O LEU A 81 N ILE A 33 SHEET 1 AA2 6 VAL A 179 THR A 186 0 SHEET 2 AA2 6 PHE A 190 ILE A 199 -1 O VAL A 196 N TYR A 182 SHEET 3 AA2 6 ILE A 252 TYR A 257 -1 O ILE A 252 N ILE A 199 SHEET 4 AA2 6 ALA A 207 HIS A 213 1 N ILE A 208 O TYR A 253 SHEET 5 AA2 6 VAL A 281 GLN A 286 1 O MET A 285 N VAL A 209 SHEET 6 AA2 6 THR A 350 THR A 351 1 O THR A 351 N VAL A 284 SHEET 1 AA3 3 VAL A 328 THR A 331 0 SHEET 2 AA3 3 ILE A 301 LEU A 304 1 N LEU A 303 O GLY A 329 SHEET 3 AA3 3 PRO A 353 SER A 354 -1 O SER A 354 N TRP A 302 SHEET 1 AA4 4 ARG B 47 GLN B 51 0 SHEET 2 AA4 4 PHE B 55 ILE B 60 -1 O PHE B 57 N ALA B 50 SHEET 3 AA4 4 ASP B 30 SER B 35 -1 N VAL B 34 O SER B 56 SHEET 4 AA4 4 LEU B 81 ASN B 82 -1 O LEU B 81 N ILE B 33 SHEET 1 AA5 6 VAL B 179 THR B 186 0 SHEET 2 AA5 6 PHE B 190 ILE B 199 -1 O SER B 194 N VAL B 184 SHEET 3 AA5 6 ILE B 252 TYR B 257 -1 O ILE B 252 N ILE B 199 SHEET 4 AA5 6 ALA B 207 HIS B 213 1 N ILE B 208 O TYR B 253 SHEET 5 AA5 6 VAL B 281 GLN B 286 1 O MET B 285 N VAL B 209 SHEET 6 AA5 6 THR B 350 THR B 351 1 O THR B 351 N GLN B 286 SHEET 1 AA6 3 VAL B 328 THR B 331 0 SHEET 2 AA6 3 ILE B 301 LEU B 304 1 N LEU B 303 O THR B 331 SHEET 3 AA6 3 PRO B 353 SER B 354 -1 O SER B 354 N TRP B 302 SSBOND 1 CYS A 37 CYS A 77 1555 1555 2.05 SSBOND 2 CYS A 333 CYS A 337 1555 1555 2.03 SSBOND 3 CYS B 37 CYS B 77 1555 1555 2.04 SSBOND 4 CYS B 333 CYS B 337 1555 1555 2.03 LINK NE2 HIS A 213 ZN ZN A 402 1555 1555 2.29 LINK OD2 ASP A 226 ZN ZN A 401 1555 1555 2.61 LINK OD1 ASP A 226 ZN ZN A 402 1555 1555 2.25 LINK OE2 GLU A 261 ZN ZN A 401 1555 1555 2.35 LINK OD1 ASP A 288 ZN ZN A 402 1555 1555 1.99 LINK OD2 ASP A 288 ZN ZN A 402 1555 1555 2.50 LINK NE2 HIS A 366 ZN ZN A 401 1555 1555 2.61 LINK ZN ZN A 401 O HOH A 529 1555 1555 2.06 LINK NE2 HIS B 213 ZN ZN B 402 1555 1555 2.16 LINK OD2 ASP B 226 ZN ZN B 401 1555 1555 2.56 LINK OD1 ASP B 226 ZN ZN B 402 1555 1555 2.40 LINK OE2 GLU B 261 ZN ZN B 401 1555 1555 2.11 LINK OD1 ASP B 288 ZN ZN B 402 1555 1555 2.29 LINK OD2 ASP B 288 ZN ZN B 402 1555 1555 2.27 LINK NE2 HIS B 366 ZN ZN B 401 1555 1555 2.21 LINK ZN ZN B 401 O HOH B 509 1555 1555 2.13 SITE 1 AC1 5 ASP A 226 GLU A 261 HIS A 366 ZN A 402 SITE 2 AC1 5 HOH A 529 SITE 1 AC2 5 HIS A 213 ASP A 226 ASP A 288 ZN A 401 SITE 2 AC2 5 HOH A 529 SITE 1 AC3 4 GLY A 205 GLU A 206 ARG A 250 LYS A 282 SITE 1 AC4 5 ASP B 226 GLU B 261 HIS B 366 ZN B 402 SITE 2 AC4 5 HOH B 509 SITE 1 AC5 5 HIS B 213 ASP B 226 ASP B 288 ZN B 401 SITE 2 AC5 5 HOH B 509 SITE 1 AC6 4 LYS A 177 ASP A 202 ASP B 44 HOH B 501 CRYST1 152.970 152.970 108.410 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006537 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009224 0.00000