HEADER TRANSFERASE 21-JUL-16 5GNK TITLE CRYSTAL STRUCTURE OF EGFR 696-988 T790M IN COMPLEX WITH LXX-6-34 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 696-988; COMPND 5 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 6 ERBB-1; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS EGFR, T790M, LXX-6-34, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.E.YAN,C.H.YUN REVDAT 5 23-OCT-24 5GNK 1 REMARK REVDAT 4 08-NOV-23 5GNK 1 REMARK REVDAT 3 06-DEC-17 5GNK 1 JRNL REVDAT 2 04-OCT-17 5GNK 1 REMARK REVDAT 1 05-APR-17 5GNK 0 JRNL AUTH A.WANG,X.LI,H.WU,F.ZOU,X.E.YAN,C.CHEN,C.HU,K.YU,W.WANG, JRNL AUTH 2 P.ZHAO,J.WU,Z.QI,W.WANG,B.WANG,L.WANG,T.REN,S.ZHANG,C.H.YUN, JRNL AUTH 3 J.LIU,Q.LIU JRNL TITL DISCOVERY OF JRNL TITL 2 (R)-1-(3-(4-AMINO-3-(3-CHLORO-4-(PYRIDIN-2-YLMETHOXY)PHENYL) JRNL TITL 3 -1H-PYRAZOLO[3,4-D]PYRIMIDIN-1-YL)PIPERIDIN-1-YL) JRNL TITL 4 PROP-2-EN-1-ONE (CHMFL-EGFR-202) AS A NOVEL IRREVERSIBLE JRNL TITL 5 EGFR MUTANT KINASE INHIBITOR WITH A DISTINCT BINDING MODE. JRNL REF J. MED. CHEM. V. 60 2944 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28282122 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01907 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4229 - 4.3267 1.00 2902 150 0.1736 0.1844 REMARK 3 2 4.3267 - 3.4346 1.00 2759 160 0.1297 0.1402 REMARK 3 3 3.4346 - 3.0005 1.00 2708 147 0.1527 0.1551 REMARK 3 4 3.0005 - 2.7262 1.00 2716 137 0.1679 0.1772 REMARK 3 5 2.7262 - 2.5308 1.00 2702 137 0.1774 0.1770 REMARK 3 6 2.5308 - 2.3816 1.00 2697 130 0.1766 0.1761 REMARK 3 7 2.3816 - 2.2623 1.00 2681 148 0.1687 0.2042 REMARK 3 8 2.2623 - 2.1639 1.00 2652 140 0.1680 0.1841 REMARK 3 9 2.1639 - 2.0805 1.00 2671 138 0.1761 0.1967 REMARK 3 10 2.0805 - 2.0088 1.00 2667 140 0.1795 0.2048 REMARK 3 11 2.0088 - 1.9459 1.00 2650 151 0.1861 0.2128 REMARK 3 12 1.9459 - 1.8903 1.00 2653 139 0.1808 0.1973 REMARK 3 13 1.8903 - 1.8406 1.00 2638 153 0.1887 0.1984 REMARK 3 14 1.8406 - 1.7956 0.97 2565 123 0.1905 0.2008 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 2450 REMARK 3 ANGLE : 1.512 3276 REMARK 3 CHIRALITY : 0.397 357 REMARK 3 PLANARITY : 0.010 408 REMARK 3 DIHEDRAL : 15.860 952 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GNK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE DEPOSITION ID IS D_1300001099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39654 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.796 REMARK 200 RESOLUTION RANGE LOW (A) : 47.423 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 24.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JIT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.8M NANO3 ,0.1M B-TRIS PROPONE PH REMARK 280 6.5, 5MM TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.00200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.00200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.89550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.00200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.00200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.89550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.00200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.00200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.89550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.00200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.00200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.89550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 692 REMARK 465 ALA A 693 REMARK 465 MET A 694 REMARK 465 GLY A 695 REMARK 465 GLY A 696 REMARK 465 ALA A 864 REMARK 465 GLU A 865 REMARK 465 GLU A 866 REMARK 465 LYS A 867 REMARK 465 GLU A 868 REMARK 465 TYR A 869 REMARK 465 HIS A 870 REMARK 465 ALA A 871 REMARK 465 GLU A 872 REMARK 465 GLY A 873 REMARK 465 GLY A 874 REMARK 465 LYS A 875 REMARK 465 ARG A 986 REMARK 465 MET A 987 REMARK 465 HIS A 988 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 697 CD OE1 OE2 REMARK 470 GLU A 736 CD OE1 OE2 REMARK 470 GLU A 749 CD OE1 OE2 REMARK 470 LYS A 757 CD CE NZ REMARK 470 GLN A 976 OE1 NE2 REMARK 470 GLU A 985 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 783 -120.56 -135.92 REMARK 500 ARG A 836 -11.88 80.32 REMARK 500 ASP A 837 44.27 -146.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 80U A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1016 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1017 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1018 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1019 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1020 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1021 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1022 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1023 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1024 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1025 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1026 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1027 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1028 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1029 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1030 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 1031 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1032 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1033 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GMP RELATED DB: PDB DBREF 5GNK A 696 988 UNP P00533 EGFR_HUMAN 696 988 SEQADV 5GNK GLY A 692 UNP P00533 EXPRESSION TAG SEQADV 5GNK ALA A 693 UNP P00533 EXPRESSION TAG SEQADV 5GNK MET A 694 UNP P00533 EXPRESSION TAG SEQADV 5GNK GLY A 695 UNP P00533 EXPRESSION TAG SEQADV 5GNK MET A 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQRES 1 A 297 GLY ALA MET GLY GLY GLU ALA PRO ASN GLN ALA LEU LEU SEQRES 2 A 297 ARG ILE LEU LYS GLU THR GLU PHE LYS LYS ILE LYS VAL SEQRES 3 A 297 LEU GLY SER GLY ALA PHE GLY THR VAL TYR LYS GLY LEU SEQRES 4 A 297 TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA SEQRES 5 A 297 ILE LYS GLU LEU ARG GLU ALA THR SER PRO LYS ALA ASN SEQRES 6 A 297 LYS GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SER VAL SEQRES 7 A 297 ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU SEQRES 8 A 297 THR SER THR VAL GLN LEU ILE MET GLN LEU MET PRO PHE SEQRES 9 A 297 GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN SEQRES 10 A 297 ILE GLY SER GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE SEQRES 11 A 297 ALA LYS GLY MET ASN TYR LEU GLU ASP ARG ARG LEU VAL SEQRES 12 A 297 HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL LYS THR SEQRES 13 A 297 PRO GLN HIS VAL LYS ILE THR ASP PHE GLY LEU ALA LYS SEQRES 14 A 297 LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY SEQRES 15 A 297 GLY LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SER ILE SEQRES 16 A 297 LEU HIS ARG ILE TYR THR HIS GLN SER ASP VAL TRP SER SEQRES 17 A 297 TYR GLY VAL THR VAL TRP GLU LEU MET THR PHE GLY SER SEQRES 18 A 297 LYS PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SER SER SEQRES 19 A 297 ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE SEQRES 20 A 297 CYS THR ILE ASP VAL TYR MET ILE MET VAL LYS CYS TRP SEQRES 21 A 297 MET ILE ASP ALA ASP SER ARG PRO LYS PHE ARG GLU LEU SEQRES 22 A 297 ILE ILE GLU PHE SER LYS MET ALA ARG ASP PRO GLN ARG SEQRES 23 A 297 TYR LEU VAL ILE GLN GLY ASP GLU ARG MET HIS HET 80U A1001 35 HET NO3 A1002 4 HET NO3 A1003 4 HET NO3 A1004 4 HET NO3 A1005 4 HET NO3 A1006 4 HET NO3 A1007 4 HET NO3 A1008 4 HET NO3 A1009 4 HET NO3 A1010 4 HET EDO A1011 4 HET EDO A1012 4 HET EDO A1013 4 HET EDO A1014 4 HET EDO A1015 4 HET CL A1016 1 HET EDO A1017 4 HET EDO A1018 4 HET EDO A1019 4 HET EDO A1020 4 HET EDO A1021 4 HET EDO A1022 4 HET EDO A1023 4 HET EDO A1024 4 HET EDO A1025 4 HET EDO A1026 4 HET EDO A1027 4 HET CL A1028 1 HET NO3 A1029 4 HET EDO A1030 4 HET NO3 A1031 4 HET EDO A1032 4 HET EDO A1033 4 HETNAM 80U 1-[(3R)-3-[4-AZANYL-3-[3-CHLORANYL-4-[(1- HETNAM 2 80U METHYLIMIDAZOL-2-YL)METHOXY]PHENYL]PYRAZOLO[3,4- HETNAM 3 80U D]PYRIMIDIN-1-YL]PIPERIDIN-1-YL]PROP-2-EN-1-ONE HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 80U C24 H25 CL N8 O2 FORMUL 3 NO3 11(N O3 1-) FORMUL 12 EDO 19(C2 H6 O2) FORMUL 17 CL 2(CL 1-) FORMUL 35 HOH *239(H2 O) HELIX 1 AA1 LYS A 708 THR A 710 5 3 HELIX 2 AA2 LYS A 754 VAL A 769 1 16 HELIX 3 AA3 CYS A 797 HIS A 805 1 9 HELIX 4 AA4 LYS A 806 ILE A 809 5 4 HELIX 5 AA5 GLY A 810 ARG A 831 1 22 HELIX 6 AA6 ALA A 839 ARG A 841 5 3 HELIX 7 AA7 GLY A 857 GLY A 863 1 7 HELIX 8 AA8 PRO A 877 MET A 881 5 5 HELIX 9 AA9 ALA A 882 ARG A 889 1 8 HELIX 10 AB1 THR A 892 THR A 909 1 18 HELIX 11 AB2 PRO A 919 SER A 921 5 3 HELIX 12 AB3 GLU A 922 LYS A 929 1 8 HELIX 13 AB4 THR A 940 CYS A 950 1 11 HELIX 14 AB5 ASP A 954 ARG A 958 5 5 HELIX 15 AB6 LYS A 960 ARG A 973 1 14 HELIX 16 AB7 ASP A 974 TYR A 978 5 5 SHEET 1 AA1 5 PHE A 712 SER A 720 0 SHEET 2 AA1 5 GLY A 724 TRP A 731 -1 O VAL A 726 N LEU A 718 SHEET 3 AA1 5 ILE A 740 LEU A 747 -1 O ILE A 744 N TYR A 727 SHEET 4 AA1 5 VAL A 786 GLN A 791 -1 O MET A 790 N ALA A 743 SHEET 5 AA1 5 GLY A 779 LEU A 782 -1 N GLY A 779 O ILE A 789 SHEET 1 AA2 2 VAL A 843 THR A 847 0 SHEET 2 AA2 2 HIS A 850 ILE A 853 -1 O LYS A 852 N LEU A 844 LINK SG CYS A 797 CAO 80U A1001 1555 1555 1.83 SITE 1 AC1 17 LEU A 718 ALA A 743 LYS A 745 MET A 766 SITE 2 AC1 17 CYS A 775 LEU A 788 MET A 790 GLN A 791 SITE 3 AC1 17 MET A 793 CYS A 797 ARG A 841 LEU A 844 SITE 4 AC1 17 THR A 854 ASP A 855 EDO A1026 EDO A1027 SITE 5 AC1 17 HOH A1205 SITE 1 AC2 5 LYS A 713 LYS A 739 THR A 847 PRO A 848 SITE 2 AC2 5 GLN A 849 SITE 1 AC3 7 GLU A 804 HIS A 805 LYS A 806 ASP A 807 SITE 2 AC3 7 ASN A 808 HOH A1112 HOH A1170 SITE 1 AC4 6 ASN A 816 VAL A 819 GLN A 820 LYS A 823 SITE 2 AC4 6 EDO A1023 HOH A1138 SITE 1 AC5 10 GLY A 721 ALA A 722 PHE A 723 GLY A 724 SITE 2 AC5 10 LYS A 745 ARG A 841 ASN A 842 ASP A 855 SITE 3 AC5 10 EDO A1026 HOH A1104 SITE 1 AC6 3 SER A 912 PRO A 937 NO3 A1031 SITE 1 AC7 7 ILE A 715 LYS A 728 PHE A 795 TYR A 801 SITE 2 AC7 7 GLU A 804 HIS A 805 HOH A1103 SITE 1 AC8 4 LYS A 714 ILE A 715 TYR A 727 HOH A1254 SITE 1 AC9 5 PRO A 877 ILE A 878 LYS A 879 TRP A 880 SITE 2 AC9 5 ALA A 920 SITE 1 AD1 4 GLU A 884 ILE A 953 ASP A 954 ALA A 955 SITE 1 AD2 4 ARG A 705 ARG A 776 LEU A 778 HOH A1117 SITE 1 AD3 7 GLU A 709 PHE A 712 LYS A 714 GLN A 787 SITE 2 AD3 7 HOH A1122 HOH A1198 HOH A1258 SITE 1 AD4 3 GLY A 724 THR A 725 GLU A 746 SITE 1 AD5 4 ASN A 771 LYS A 823 EDO A1015 HOH A1115 SITE 1 AD6 4 PRO A 753 ILE A 965 EDO A1014 HOH A1131 SITE 1 AD7 4 CYS A 775 ARG A 776 GLN A 791 LYS A 852 SITE 1 AD8 4 LEU A 883 GLU A 884 HIS A 888 HOH A1147 SITE 1 AD9 2 THR A 892 HIS A 893 SITE 1 AE1 2 ILE A 981 GLN A 982 SITE 1 AE2 5 ASP A 956 ARG A 958 LYS A 960 GLU A 963 SITE 2 AE2 5 HOH A1155 SITE 1 AE3 3 ARG A 889 LYS A 970 TYR A 978 SITE 1 AE4 2 GLU A 762 HOH A1107 SITE 1 AE5 5 GLN A 820 GLN A 849 NO3 A1004 HOH A1239 SITE 2 AE5 5 HOH A1263 SITE 1 AE6 2 GLY A 911 HOH A1124 SITE 1 AE7 3 THR A 783 GLU A 928 HOH A1211 SITE 1 AE8 9 SER A 720 GLY A 721 VAL A 726 ARG A 841 SITE 2 AE8 9 80U A1001 NO3 A1005 EDO A1027 HOH A1113 SITE 3 AE8 9 HOH A1205 SITE 1 AE9 7 SER A 720 80U A1001 EDO A1026 HOH A1132 SITE 2 AE9 7 HOH A1171 HOH A1218 HOH A1262 SITE 1 AF1 3 LYS A 846 HIS A 850 LYS A 852 SITE 1 AF2 7 TYR A 801 HIS A 805 ASN A 808 ILE A 809 SITE 2 AF2 7 TYR A 813 PRO A 848 HOH A1229 SITE 1 AF3 7 ASP A 837 ALA A 839 ARG A 841 TRP A 880 SITE 2 AF3 7 HOH A1192 HOH A1216 HOH A1232 SITE 1 AF4 8 TRP A 905 LYS A 913 TYR A 915 ASP A 916 SITE 2 AF4 8 LEU A 933 PRO A 934 NO3 A1006 HOH A1164 SITE 1 AF5 4 LYS A 716 LEU A 718 LYS A 728 HOH A1114 SITE 1 AF6 5 LEU A 782 ARG A 932 VAL A 948 TRP A 951 SITE 2 AF6 5 MET A 952 CRYST1 106.004 106.004 73.791 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009434 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013552 0.00000