data_5GNP # _entry.id 5GNP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5GNP pdb_00005gnp 10.2210/pdb5gnp/pdb WWPDB D_1300001053 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-26 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 2 2 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5GNP _pdbx_database_status.recvd_initial_deposition_date 2016-07-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Choi, H.' 1 'Yoon, H.J.' 2 'Lee, H.H.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of a Z-ring associated protein from Salmonella typhimurium' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Choi, H.' 1 ? primary 'Yoon, H.J.' 2 ? primary 'Lee, H.H.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cell division protein ZapD' 28190.363 1 ? ? 'UNP residues 3-247' ? 2 non-polymer syn 'MALONATE ION' 102.046 1 ? ? ? ? 3 water nat water 18.015 36 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Z ring-associated protein D' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TQVLFEHPLNEKMRTWLRIEFLIQQLSINLPIADHAGALHFFRNISDLLDVFERGEVRTELLKELERQQRKLQAWVEVPG VDQDRIEALRQQLKSAGSVLISAPRIGQQLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLQQAQRDAQIESWLASLN PLTQALTLVLDLIRNSAPFRKQTSLNGFYQDNGDDADLLRLMLTLDSQLYPQISGHKSRFAIRFMPLDSENGLVPERLDF ELACC ; _entity_poly.pdbx_seq_one_letter_code_can ;TQVLFEHPLNEKMRTWLRIEFLIQQLSINLPIADHAGALHFFRNISDLLDVFERGEVRTELLKELERQQRKLQAWVEVPG VDQDRIEALRQQLKSAGSVLISAPRIGQQLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLQQAQRDAQIESWLASLN PLTQALTLVLDLIRNSAPFRKQTSLNGFYQDNGDDADLLRLMLTLDSQLYPQISGHKSRFAIRFMPLDSENGLVPERLDF ELACC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MALONATE ION' MLI 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 GLN n 1 3 VAL n 1 4 LEU n 1 5 PHE n 1 6 GLU n 1 7 HIS n 1 8 PRO n 1 9 LEU n 1 10 ASN n 1 11 GLU n 1 12 LYS n 1 13 MET n 1 14 ARG n 1 15 THR n 1 16 TRP n 1 17 LEU n 1 18 ARG n 1 19 ILE n 1 20 GLU n 1 21 PHE n 1 22 LEU n 1 23 ILE n 1 24 GLN n 1 25 GLN n 1 26 LEU n 1 27 SER n 1 28 ILE n 1 29 ASN n 1 30 LEU n 1 31 PRO n 1 32 ILE n 1 33 ALA n 1 34 ASP n 1 35 HIS n 1 36 ALA n 1 37 GLY n 1 38 ALA n 1 39 LEU n 1 40 HIS n 1 41 PHE n 1 42 PHE n 1 43 ARG n 1 44 ASN n 1 45 ILE n 1 46 SER n 1 47 ASP n 1 48 LEU n 1 49 LEU n 1 50 ASP n 1 51 VAL n 1 52 PHE n 1 53 GLU n 1 54 ARG n 1 55 GLY n 1 56 GLU n 1 57 VAL n 1 58 ARG n 1 59 THR n 1 60 GLU n 1 61 LEU n 1 62 LEU n 1 63 LYS n 1 64 GLU n 1 65 LEU n 1 66 GLU n 1 67 ARG n 1 68 GLN n 1 69 GLN n 1 70 ARG n 1 71 LYS n 1 72 LEU n 1 73 GLN n 1 74 ALA n 1 75 TRP n 1 76 VAL n 1 77 GLU n 1 78 VAL n 1 79 PRO n 1 80 GLY n 1 81 VAL n 1 82 ASP n 1 83 GLN n 1 84 ASP n 1 85 ARG n 1 86 ILE n 1 87 GLU n 1 88 ALA n 1 89 LEU n 1 90 ARG n 1 91 GLN n 1 92 GLN n 1 93 LEU n 1 94 LYS n 1 95 SER n 1 96 ALA n 1 97 GLY n 1 98 SER n 1 99 VAL n 1 100 LEU n 1 101 ILE n 1 102 SER n 1 103 ALA n 1 104 PRO n 1 105 ARG n 1 106 ILE n 1 107 GLY n 1 108 GLN n 1 109 GLN n 1 110 LEU n 1 111 ARG n 1 112 GLU n 1 113 ASP n 1 114 ARG n 1 115 LEU n 1 116 ILE n 1 117 ALA n 1 118 LEU n 1 119 VAL n 1 120 ARG n 1 121 GLN n 1 122 ARG n 1 123 LEU n 1 124 SER n 1 125 ILE n 1 126 PRO n 1 127 GLY n 1 128 GLY n 1 129 CYS n 1 130 CYS n 1 131 SER n 1 132 PHE n 1 133 ASP n 1 134 LEU n 1 135 PRO n 1 136 THR n 1 137 LEU n 1 138 HIS n 1 139 ILE n 1 140 TRP n 1 141 LEU n 1 142 HIS n 1 143 LEU n 1 144 GLN n 1 145 GLN n 1 146 ALA n 1 147 GLN n 1 148 ARG n 1 149 ASP n 1 150 ALA n 1 151 GLN n 1 152 ILE n 1 153 GLU n 1 154 SER n 1 155 TRP n 1 156 LEU n 1 157 ALA n 1 158 SER n 1 159 LEU n 1 160 ASN n 1 161 PRO n 1 162 LEU n 1 163 THR n 1 164 GLN n 1 165 ALA n 1 166 LEU n 1 167 THR n 1 168 LEU n 1 169 VAL n 1 170 LEU n 1 171 ASP n 1 172 LEU n 1 173 ILE n 1 174 ARG n 1 175 ASN n 1 176 SER n 1 177 ALA n 1 178 PRO n 1 179 PHE n 1 180 ARG n 1 181 LYS n 1 182 GLN n 1 183 THR n 1 184 SER n 1 185 LEU n 1 186 ASN n 1 187 GLY n 1 188 PHE n 1 189 TYR n 1 190 GLN n 1 191 ASP n 1 192 ASN n 1 193 GLY n 1 194 ASP n 1 195 ASP n 1 196 ALA n 1 197 ASP n 1 198 LEU n 1 199 LEU n 1 200 ARG n 1 201 LEU n 1 202 MET n 1 203 LEU n 1 204 THR n 1 205 LEU n 1 206 ASP n 1 207 SER n 1 208 GLN n 1 209 LEU n 1 210 TYR n 1 211 PRO n 1 212 GLN n 1 213 ILE n 1 214 SER n 1 215 GLY n 1 216 HIS n 1 217 LYS n 1 218 SER n 1 219 ARG n 1 220 PHE n 1 221 ALA n 1 222 ILE n 1 223 ARG n 1 224 PHE n 1 225 MET n 1 226 PRO n 1 227 LEU n 1 228 ASP n 1 229 SER n 1 230 GLU n 1 231 ASN n 1 232 GLY n 1 233 LEU n 1 234 VAL n 1 235 PRO n 1 236 GLU n 1 237 ARG n 1 238 LEU n 1 239 ASP n 1 240 PHE n 1 241 GLU n 1 242 LEU n 1 243 ALA n 1 244 CYS n 1 245 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 245 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'zapD, STM0139' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'LT2 / SGSC1412 / ATCC 700720' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 99287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLI non-polymer . 'MALONATE ION' ? 'C3 H2 O4 -2' 102.046 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 3 3 THR THR A . n A 1 2 GLN 2 4 4 GLN GLN A . n A 1 3 VAL 3 5 5 VAL VAL A . n A 1 4 LEU 4 6 6 LEU LEU A . n A 1 5 PHE 5 7 7 PHE PHE A . n A 1 6 GLU 6 8 8 GLU GLU A . n A 1 7 HIS 7 9 9 HIS HIS A . n A 1 8 PRO 8 10 10 PRO PRO A . n A 1 9 LEU 9 11 11 LEU LEU A . n A 1 10 ASN 10 12 12 ASN ASN A . n A 1 11 GLU 11 13 13 GLU GLU A . n A 1 12 LYS 12 14 14 LYS LYS A . n A 1 13 MET 13 15 15 MET MET A . n A 1 14 ARG 14 16 16 ARG ARG A . n A 1 15 THR 15 17 17 THR THR A . n A 1 16 TRP 16 18 18 TRP TRP A . n A 1 17 LEU 17 19 19 LEU LEU A . n A 1 18 ARG 18 20 20 ARG ARG A . n A 1 19 ILE 19 21 21 ILE ILE A . n A 1 20 GLU 20 22 22 GLU GLU A . n A 1 21 PHE 21 23 23 PHE PHE A . n A 1 22 LEU 22 24 24 LEU LEU A . n A 1 23 ILE 23 25 25 ILE ILE A . n A 1 24 GLN 24 26 26 GLN GLN A . n A 1 25 GLN 25 27 27 GLN GLN A . n A 1 26 LEU 26 28 28 LEU LEU A . n A 1 27 SER 27 29 29 SER SER A . n A 1 28 ILE 28 30 30 ILE ILE A . n A 1 29 ASN 29 31 31 ASN ASN A . n A 1 30 LEU 30 32 32 LEU LEU A . n A 1 31 PRO 31 33 33 PRO PRO A . n A 1 32 ILE 32 34 34 ILE ILE A . n A 1 33 ALA 33 35 35 ALA ALA A . n A 1 34 ASP 34 36 36 ASP ASP A . n A 1 35 HIS 35 37 37 HIS HIS A . n A 1 36 ALA 36 38 38 ALA ALA A . n A 1 37 GLY 37 39 39 GLY GLY A . n A 1 38 ALA 38 40 40 ALA ALA A . n A 1 39 LEU 39 41 41 LEU LEU A . n A 1 40 HIS 40 42 42 HIS HIS A . n A 1 41 PHE 41 43 43 PHE PHE A . n A 1 42 PHE 42 44 44 PHE PHE A . n A 1 43 ARG 43 45 45 ARG ARG A . n A 1 44 ASN 44 46 46 ASN ASN A . n A 1 45 ILE 45 47 47 ILE ILE A . n A 1 46 SER 46 48 48 SER SER A . n A 1 47 ASP 47 49 49 ASP ASP A . n A 1 48 LEU 48 50 50 LEU LEU A . n A 1 49 LEU 49 51 51 LEU LEU A . n A 1 50 ASP 50 52 52 ASP ASP A . n A 1 51 VAL 51 53 53 VAL VAL A . n A 1 52 PHE 52 54 54 PHE PHE A . n A 1 53 GLU 53 55 55 GLU GLU A . n A 1 54 ARG 54 56 56 ARG ARG A . n A 1 55 GLY 55 57 57 GLY GLY A . n A 1 56 GLU 56 58 58 GLU GLU A . n A 1 57 VAL 57 59 59 VAL VAL A . n A 1 58 ARG 58 60 60 ARG ARG A . n A 1 59 THR 59 61 61 THR THR A . n A 1 60 GLU 60 62 62 GLU GLU A . n A 1 61 LEU 61 63 63 LEU LEU A . n A 1 62 LEU 62 64 64 LEU LEU A . n A 1 63 LYS 63 65 65 LYS LYS A . n A 1 64 GLU 64 66 66 GLU GLU A . n A 1 65 LEU 65 67 67 LEU LEU A . n A 1 66 GLU 66 68 68 GLU GLU A . n A 1 67 ARG 67 69 69 ARG ARG A . n A 1 68 GLN 68 70 70 GLN GLN A . n A 1 69 GLN 69 71 71 GLN GLN A . n A 1 70 ARG 70 72 72 ARG ARG A . n A 1 71 LYS 71 73 73 LYS LYS A . n A 1 72 LEU 72 74 74 LEU LEU A . n A 1 73 GLN 73 75 75 GLN GLN A . n A 1 74 ALA 74 76 76 ALA ALA A . n A 1 75 TRP 75 77 77 TRP TRP A . n A 1 76 VAL 76 78 78 VAL VAL A . n A 1 77 GLU 77 79 79 GLU GLU A . n A 1 78 VAL 78 80 80 VAL VAL A . n A 1 79 PRO 79 81 81 PRO PRO A . n A 1 80 GLY 80 82 82 GLY GLY A . n A 1 81 VAL 81 83 83 VAL VAL A . n A 1 82 ASP 82 84 84 ASP ASP A . n A 1 83 GLN 83 85 85 GLN GLN A . n A 1 84 ASP 84 86 86 ASP ASP A . n A 1 85 ARG 85 87 87 ARG ARG A . n A 1 86 ILE 86 88 88 ILE ILE A . n A 1 87 GLU 87 89 89 GLU GLU A . n A 1 88 ALA 88 90 90 ALA ALA A . n A 1 89 LEU 89 91 91 LEU LEU A . n A 1 90 ARG 90 92 92 ARG ARG A . n A 1 91 GLN 91 93 93 GLN GLN A . n A 1 92 GLN 92 94 94 GLN GLN A . n A 1 93 LEU 93 95 95 LEU LEU A . n A 1 94 LYS 94 96 96 LYS LYS A . n A 1 95 SER 95 97 97 SER SER A . n A 1 96 ALA 96 98 98 ALA ALA A . n A 1 97 GLY 97 99 99 GLY GLY A . n A 1 98 SER 98 100 100 SER SER A . n A 1 99 VAL 99 101 101 VAL VAL A . n A 1 100 LEU 100 102 102 LEU LEU A . n A 1 101 ILE 101 103 103 ILE ILE A . n A 1 102 SER 102 104 104 SER SER A . n A 1 103 ALA 103 105 105 ALA ALA A . n A 1 104 PRO 104 106 106 PRO PRO A . n A 1 105 ARG 105 107 107 ARG ARG A . n A 1 106 ILE 106 108 108 ILE ILE A . n A 1 107 GLY 107 109 109 GLY GLY A . n A 1 108 GLN 108 110 110 GLN GLN A . n A 1 109 GLN 109 111 111 GLN GLN A . n A 1 110 LEU 110 112 112 LEU LEU A . n A 1 111 ARG 111 113 113 ARG ARG A . n A 1 112 GLU 112 114 114 GLU GLU A . n A 1 113 ASP 113 115 115 ASP ASP A . n A 1 114 ARG 114 116 116 ARG ARG A . n A 1 115 LEU 115 117 117 LEU LEU A . n A 1 116 ILE 116 118 118 ILE ILE A . n A 1 117 ALA 117 119 119 ALA ALA A . n A 1 118 LEU 118 120 120 LEU LEU A . n A 1 119 VAL 119 121 121 VAL VAL A . n A 1 120 ARG 120 122 122 ARG ARG A . n A 1 121 GLN 121 123 123 GLN GLN A . n A 1 122 ARG 122 124 124 ARG ARG A . n A 1 123 LEU 123 125 125 LEU LEU A . n A 1 124 SER 124 126 126 SER SER A . n A 1 125 ILE 125 127 127 ILE ILE A . n A 1 126 PRO 126 128 128 PRO PRO A . n A 1 127 GLY 127 129 129 GLY GLY A . n A 1 128 GLY 128 130 130 GLY GLY A . n A 1 129 CYS 129 131 131 CYS CYS A . n A 1 130 CYS 130 132 132 CYS CYS A . n A 1 131 SER 131 133 133 SER SER A . n A 1 132 PHE 132 134 134 PHE PHE A . n A 1 133 ASP 133 135 135 ASP ASP A . n A 1 134 LEU 134 136 136 LEU LEU A . n A 1 135 PRO 135 137 137 PRO PRO A . n A 1 136 THR 136 138 138 THR THR A . n A 1 137 LEU 137 139 139 LEU LEU A . n A 1 138 HIS 138 140 140 HIS HIS A . n A 1 139 ILE 139 141 141 ILE ILE A . n A 1 140 TRP 140 142 142 TRP TRP A . n A 1 141 LEU 141 143 143 LEU LEU A . n A 1 142 HIS 142 144 144 HIS HIS A . n A 1 143 LEU 143 145 145 LEU LEU A . n A 1 144 GLN 144 146 146 GLN GLN A . n A 1 145 GLN 145 147 147 GLN GLN A . n A 1 146 ALA 146 148 148 ALA ALA A . n A 1 147 GLN 147 149 149 GLN GLN A . n A 1 148 ARG 148 150 150 ARG ARG A . n A 1 149 ASP 149 151 151 ASP ASP A . n A 1 150 ALA 150 152 152 ALA ALA A . n A 1 151 GLN 151 153 153 GLN GLN A . n A 1 152 ILE 152 154 154 ILE ILE A . n A 1 153 GLU 153 155 155 GLU GLU A . n A 1 154 SER 154 156 156 SER SER A . n A 1 155 TRP 155 157 157 TRP TRP A . n A 1 156 LEU 156 158 158 LEU LEU A . n A 1 157 ALA 157 159 159 ALA ALA A . n A 1 158 SER 158 160 160 SER SER A . n A 1 159 LEU 159 161 161 LEU LEU A . n A 1 160 ASN 160 162 162 ASN ASN A . n A 1 161 PRO 161 163 163 PRO PRO A . n A 1 162 LEU 162 164 164 LEU LEU A . n A 1 163 THR 163 165 165 THR THR A . n A 1 164 GLN 164 166 166 GLN GLN A . n A 1 165 ALA 165 167 167 ALA ALA A . n A 1 166 LEU 166 168 168 LEU LEU A . n A 1 167 THR 167 169 169 THR THR A . n A 1 168 LEU 168 170 170 LEU LEU A . n A 1 169 VAL 169 171 171 VAL VAL A . n A 1 170 LEU 170 172 172 LEU LEU A . n A 1 171 ASP 171 173 173 ASP ASP A . n A 1 172 LEU 172 174 174 LEU LEU A . n A 1 173 ILE 173 175 175 ILE ILE A . n A 1 174 ARG 174 176 176 ARG ARG A . n A 1 175 ASN 175 177 177 ASN ASN A . n A 1 176 SER 176 178 178 SER SER A . n A 1 177 ALA 177 179 179 ALA ALA A . n A 1 178 PRO 178 180 180 PRO PRO A . n A 1 179 PHE 179 181 181 PHE PHE A . n A 1 180 ARG 180 182 182 ARG ARG A . n A 1 181 LYS 181 183 183 LYS LYS A . n A 1 182 GLN 182 184 184 GLN GLN A . n A 1 183 THR 183 185 185 THR THR A . n A 1 184 SER 184 186 186 SER SER A . n A 1 185 LEU 185 187 187 LEU LEU A . n A 1 186 ASN 186 188 188 ASN ASN A . n A 1 187 GLY 187 189 189 GLY GLY A . n A 1 188 PHE 188 190 190 PHE PHE A . n A 1 189 TYR 189 191 191 TYR TYR A . n A 1 190 GLN 190 192 192 GLN GLN A . n A 1 191 ASP 191 193 193 ASP ASP A . n A 1 192 ASN 192 194 194 ASN ASN A . n A 1 193 GLY 193 195 195 GLY GLY A . n A 1 194 ASP 194 196 196 ASP ASP A . n A 1 195 ASP 195 197 197 ASP ASP A . n A 1 196 ALA 196 198 198 ALA ALA A . n A 1 197 ASP 197 199 199 ASP ASP A . n A 1 198 LEU 198 200 200 LEU LEU A . n A 1 199 LEU 199 201 201 LEU LEU A . n A 1 200 ARG 200 202 202 ARG ARG A . n A 1 201 LEU 201 203 203 LEU LEU A . n A 1 202 MET 202 204 204 MET MET A . n A 1 203 LEU 203 205 205 LEU LEU A . n A 1 204 THR 204 206 206 THR THR A . n A 1 205 LEU 205 207 207 LEU LEU A . n A 1 206 ASP 206 208 208 ASP ASP A . n A 1 207 SER 207 209 209 SER SER A . n A 1 208 GLN 208 210 210 GLN GLN A . n A 1 209 LEU 209 211 211 LEU LEU A . n A 1 210 TYR 210 212 212 TYR TYR A . n A 1 211 PRO 211 213 213 PRO PRO A . n A 1 212 GLN 212 214 214 GLN GLN A . n A 1 213 ILE 213 215 215 ILE ILE A . n A 1 214 SER 214 216 216 SER SER A . n A 1 215 GLY 215 217 217 GLY GLY A . n A 1 216 HIS 216 218 218 HIS HIS A . n A 1 217 LYS 217 219 219 LYS LYS A . n A 1 218 SER 218 220 220 SER SER A . n A 1 219 ARG 219 221 221 ARG ARG A . n A 1 220 PHE 220 222 222 PHE PHE A . n A 1 221 ALA 221 223 223 ALA ALA A . n A 1 222 ILE 222 224 224 ILE ILE A . n A 1 223 ARG 223 225 225 ARG ARG A . n A 1 224 PHE 224 226 226 PHE PHE A . n A 1 225 MET 225 227 227 MET MET A . n A 1 226 PRO 226 228 228 PRO PRO A . n A 1 227 LEU 227 229 229 LEU LEU A . n A 1 228 ASP 228 230 230 ASP ASP A . n A 1 229 SER 229 231 231 SER SER A . n A 1 230 GLU 230 232 232 GLU GLU A . n A 1 231 ASN 231 233 233 ASN ASN A . n A 1 232 GLY 232 234 234 GLY GLY A . n A 1 233 LEU 233 235 235 LEU LEU A . n A 1 234 VAL 234 236 236 VAL VAL A . n A 1 235 PRO 235 237 237 PRO PRO A . n A 1 236 GLU 236 238 238 GLU GLU A . n A 1 237 ARG 237 239 239 ARG ARG A . n A 1 238 LEU 238 240 240 LEU LEU A . n A 1 239 ASP 239 241 241 ASP ASP A . n A 1 240 PHE 240 242 242 PHE PHE A . n A 1 241 GLU 241 243 243 GLU GLU A . n A 1 242 LEU 242 244 244 LEU LEU A . n A 1 243 ALA 243 245 245 ALA ALA A . n A 1 244 CYS 244 246 246 CYS CYS A . n A 1 245 CYS 245 247 247 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI 1 301 1 MLI MLI A . C 3 HOH 1 401 36 HOH HOH A . C 3 HOH 2 402 10 HOH HOH A . C 3 HOH 3 403 12 HOH HOH A . C 3 HOH 4 404 20 HOH HOH A . C 3 HOH 5 405 7 HOH HOH A . C 3 HOH 6 406 5 HOH HOH A . C 3 HOH 7 407 21 HOH HOH A . C 3 HOH 8 408 26 HOH HOH A . C 3 HOH 9 409 28 HOH HOH A . C 3 HOH 10 410 13 HOH HOH A . C 3 HOH 11 411 18 HOH HOH A . C 3 HOH 12 412 8 HOH HOH A . C 3 HOH 13 413 17 HOH HOH A . C 3 HOH 14 414 23 HOH HOH A . C 3 HOH 15 415 14 HOH HOH A . C 3 HOH 16 416 22 HOH HOH A . C 3 HOH 17 417 9 HOH HOH A . C 3 HOH 18 418 4 HOH HOH A . C 3 HOH 19 419 30 HOH HOH A . C 3 HOH 20 420 35 HOH HOH A . C 3 HOH 21 421 1 HOH HOH A . C 3 HOH 22 422 11 HOH HOH A . C 3 HOH 23 423 19 HOH HOH A . C 3 HOH 24 424 31 HOH HOH A . C 3 HOH 25 425 29 HOH HOH A . C 3 HOH 26 426 16 HOH HOH A . C 3 HOH 27 427 24 HOH HOH A . C 3 HOH 28 428 6 HOH HOH A . C 3 HOH 29 429 15 HOH HOH A . C 3 HOH 30 430 27 HOH HOH A . C 3 HOH 31 431 3 HOH HOH A . C 3 HOH 32 432 2 HOH HOH A . C 3 HOH 33 433 34 HOH HOH A . C 3 HOH 34 434 37 HOH HOH A . C 3 HOH 35 435 32 HOH HOH A . C 3 HOH 36 436 33 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0049 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.entry_id 5GNP _cell.length_a 84.239 _cell.length_b 84.239 _cell.length_c 149.865 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GNP _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5GNP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Sodium malonate, HEPES, Jeffamin ED-2001(pH7.0).' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-04-22 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5GNP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.6 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8289 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13 _reflns.pdbx_Rmerge_I_obs 0.160 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 48.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.85 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.649 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5GNP _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7871 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 99.54 _refine.ls_R_factor_obs 0.25283 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.25134 _refine.ls_R_factor_R_free 0.28290 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 383 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.911 _refine.correlation_coeff_Fo_to_Fc_free 0.802 _refine.B_iso_mean 82.374 _refine.aniso_B[1][1] 0.63 _refine.aniso_B[2][2] 0.63 _refine.aniso_B[3][3] -2.05 _refine.aniso_B[1][2] 0.32 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.409 _refine.overall_SU_ML 0.299 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 14.796 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1983 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 2026 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.019 ? 2026 'X-RAY DIFFRACTION' ? r_bond_other_d 0.005 0.020 ? 1986 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.927 1.974 ? 2742 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.707 3.000 ? 4543 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.150 5.000 ? 244 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.230 23.750 ? 104 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.119 15.000 ? 366 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.704 15.000 ? 21 'X-RAY DIFFRACTION' ? r_chiral_restr 0.050 0.200 ? 309 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.021 ? 2299 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 486 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.850 8.116 ? 979 'X-RAY DIFFRACTION' ? r_mcbond_other 2.849 8.117 ? 978 'X-RAY DIFFRACTION' ? r_mcangle_it 4.864 12.168 ? 1222 'X-RAY DIFFRACTION' ? r_mcangle_other 4.862 12.167 ? 1223 'X-RAY DIFFRACTION' ? r_scbond_it 2.723 8.437 ? 1047 'X-RAY DIFFRACTION' ? r_scbond_other 2.722 8.435 ? 1045 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 4.650 12.541 ? 1520 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.774 62.589 ? 2204 'X-RAY DIFFRACTION' ? r_long_range_B_other 7.769 62.603 ? 2203 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.800 _refine_ls_shell.d_res_low 2.873 _refine_ls_shell.number_reflns_R_work 548 _refine_ls_shell.R_factor_R_work 0.304 _refine_ls_shell.percent_reflns_obs 99.83 _refine_ls_shell.R_factor_R_free 0.303 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 27 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5GNP _struct.title 'Crystal structure of a Z-ring associated protein from Salmonella typhimurium' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5GNP _struct_keywords.text 'ZapD, cytokinesis, cell division, FtsZ, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ZAPD_SALTY _struct_ref.pdbx_db_accession P67693 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TQVLFEHPLNEKMRTWLRIEFLIQQLSINLPIADHAGALHFFRNISDLLDVFERGEVRTELLKELERQQRKLQAWVEVPG VDQDRIEALRQQLKSAGSVLISAPRIGQQLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLQQAQRDAQIESWLASLN PLTQALTLVLDLIRNSAPFRKQTSLNGFYQDNGDDADLLRLMLTLDSQLYPQISGHKSRFAIRFMPLDSENGLVPERLDF ELACC ; _struct_ref.pdbx_align_begin 3 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5GNP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 245 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P67693 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 247 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 247 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4100 ? 1 MORE -22 ? 1 'SSA (A^2)' 25040 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 10 ? ASN A 29 ? ASN A 12 ASN A 31 1 ? 20 HELX_P HELX_P2 AA2 ASP A 34 ? PHE A 52 ? ASP A 36 PHE A 54 1 ? 19 HELX_P HELX_P3 AA3 GLU A 53 ? GLY A 55 ? GLU A 55 GLY A 57 5 ? 3 HELX_P HELX_P4 AA4 GLU A 56 ? GLN A 73 ? GLU A 58 GLN A 75 1 ? 18 HELX_P HELX_P5 AA5 ASP A 82 ? ALA A 103 ? ASP A 84 ALA A 105 1 ? 22 HELX_P HELX_P6 AA6 GLY A 107 ? ASP A 113 ? GLY A 109 ASP A 115 1 ? 7 HELX_P HELX_P7 AA7 ASP A 113 ? LEU A 123 ? ASP A 115 LEU A 125 1 ? 11 HELX_P HELX_P8 AA8 LEU A 134 ? LEU A 141 ? LEU A 136 LEU A 143 1 ? 8 HELX_P HELX_P9 AA9 GLN A 144 ? SER A 158 ? GLN A 146 SER A 160 1 ? 15 HELX_P HELX_P10 AB1 LEU A 159 ? ASN A 175 ? LEU A 161 ASN A 177 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 30 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 32 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 31 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 33 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.48 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 2 ? PRO A 8 ? GLN A 4 PRO A 10 AA1 2 LEU A 198 ? THR A 204 ? LEU A 200 THR A 206 AA1 3 ARG A 237 ? CYS A 244 ? ARG A 239 CYS A 246 AA1 4 ARG A 180 ? LEU A 185 ? ARG A 182 LEU A 187 AA2 1 PHE A 188 ? ASN A 192 ? PHE A 190 ASN A 194 AA2 2 ARG A 219 ? PRO A 226 ? ARG A 221 PRO A 228 AA2 3 LEU A 209 ? GLY A 215 ? LEU A 211 GLY A 217 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 5 ? N PHE A 7 O LEU A 201 ? O LEU A 203 AA1 2 3 N ARG A 200 ? N ARG A 202 O ALA A 243 ? O ALA A 245 AA1 3 4 O LEU A 238 ? O LEU A 240 N SER A 184 ? N SER A 186 AA2 1 2 N TYR A 189 ? N TYR A 191 O ILE A 222 ? O ILE A 224 AA2 2 3 O MET A 225 ? O MET A 227 N TYR A 210 ? N TYR A 212 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MLI _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'binding site for residue MLI A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG A 180 ? ARG A 182 . ? 11_554 ? 2 AC1 4 TYR A 189 ? TYR A 191 . ? 1_555 ? 3 AC1 4 GLN A 190 ? GLN A 192 . ? 1_555 ? 4 AC1 4 HOH C . ? HOH A 409 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 196 ? ? 70.44 -129.87 2 1 SER A 216 ? ? -102.43 -161.03 3 1 SER A 220 ? ? -155.07 -44.52 4 1 ARG A 221 ? ? -43.76 98.57 5 1 GLU A 232 ? ? -124.95 -60.09 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 419 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MLI C1 C N N 250 MLI C2 C N N 251 MLI C3 C N N 252 MLI O6 O N N 253 MLI O7 O N N 254 MLI O8 O N N 255 MLI O9 O N N 256 MLI H11 H N N 257 MLI H12 H N N 258 PHE N N N N 259 PHE CA C N S 260 PHE C C N N 261 PHE O O N N 262 PHE CB C N N 263 PHE CG C Y N 264 PHE CD1 C Y N 265 PHE CD2 C Y N 266 PHE CE1 C Y N 267 PHE CE2 C Y N 268 PHE CZ C Y N 269 PHE OXT O N N 270 PHE H H N N 271 PHE H2 H N N 272 PHE HA H N N 273 PHE HB2 H N N 274 PHE HB3 H N N 275 PHE HD1 H N N 276 PHE HD2 H N N 277 PHE HE1 H N N 278 PHE HE2 H N N 279 PHE HZ H N N 280 PHE HXT H N N 281 PRO N N N N 282 PRO CA C N S 283 PRO C C N N 284 PRO O O N N 285 PRO CB C N N 286 PRO CG C N N 287 PRO CD C N N 288 PRO OXT O N N 289 PRO H H N N 290 PRO HA H N N 291 PRO HB2 H N N 292 PRO HB3 H N N 293 PRO HG2 H N N 294 PRO HG3 H N N 295 PRO HD2 H N N 296 PRO HD3 H N N 297 PRO HXT H N N 298 SER N N N N 299 SER CA C N S 300 SER C C N N 301 SER O O N N 302 SER CB C N N 303 SER OG O N N 304 SER OXT O N N 305 SER H H N N 306 SER H2 H N N 307 SER HA H N N 308 SER HB2 H N N 309 SER HB3 H N N 310 SER HG H N N 311 SER HXT H N N 312 THR N N N N 313 THR CA C N S 314 THR C C N N 315 THR O O N N 316 THR CB C N R 317 THR OG1 O N N 318 THR CG2 C N N 319 THR OXT O N N 320 THR H H N N 321 THR H2 H N N 322 THR HA H N N 323 THR HB H N N 324 THR HG1 H N N 325 THR HG21 H N N 326 THR HG22 H N N 327 THR HG23 H N N 328 THR HXT H N N 329 TRP N N N N 330 TRP CA C N S 331 TRP C C N N 332 TRP O O N N 333 TRP CB C N N 334 TRP CG C Y N 335 TRP CD1 C Y N 336 TRP CD2 C Y N 337 TRP NE1 N Y N 338 TRP CE2 C Y N 339 TRP CE3 C Y N 340 TRP CZ2 C Y N 341 TRP CZ3 C Y N 342 TRP CH2 C Y N 343 TRP OXT O N N 344 TRP H H N N 345 TRP H2 H N N 346 TRP HA H N N 347 TRP HB2 H N N 348 TRP HB3 H N N 349 TRP HD1 H N N 350 TRP HE1 H N N 351 TRP HE3 H N N 352 TRP HZ2 H N N 353 TRP HZ3 H N N 354 TRP HH2 H N N 355 TRP HXT H N N 356 TYR N N N N 357 TYR CA C N S 358 TYR C C N N 359 TYR O O N N 360 TYR CB C N N 361 TYR CG C Y N 362 TYR CD1 C Y N 363 TYR CD2 C Y N 364 TYR CE1 C Y N 365 TYR CE2 C Y N 366 TYR CZ C Y N 367 TYR OH O N N 368 TYR OXT O N N 369 TYR H H N N 370 TYR H2 H N N 371 TYR HA H N N 372 TYR HB2 H N N 373 TYR HB3 H N N 374 TYR HD1 H N N 375 TYR HD2 H N N 376 TYR HE1 H N N 377 TYR HE2 H N N 378 TYR HH H N N 379 TYR HXT H N N 380 VAL N N N N 381 VAL CA C N S 382 VAL C C N N 383 VAL O O N N 384 VAL CB C N N 385 VAL CG1 C N N 386 VAL CG2 C N N 387 VAL OXT O N N 388 VAL H H N N 389 VAL H2 H N N 390 VAL HA H N N 391 VAL HB H N N 392 VAL HG11 H N N 393 VAL HG12 H N N 394 VAL HG13 H N N 395 VAL HG21 H N N 396 VAL HG22 H N N 397 VAL HG23 H N N 398 VAL HXT H N N 399 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MLI C1 C2 sing N N 237 MLI C1 C3 sing N N 238 MLI C1 H11 sing N N 239 MLI C1 H12 sing N N 240 MLI C2 O6 doub N N 241 MLI C2 O7 sing N N 242 MLI C3 O8 doub N N 243 MLI C3 O9 sing N N 244 PHE N CA sing N N 245 PHE N H sing N N 246 PHE N H2 sing N N 247 PHE CA C sing N N 248 PHE CA CB sing N N 249 PHE CA HA sing N N 250 PHE C O doub N N 251 PHE C OXT sing N N 252 PHE CB CG sing N N 253 PHE CB HB2 sing N N 254 PHE CB HB3 sing N N 255 PHE CG CD1 doub Y N 256 PHE CG CD2 sing Y N 257 PHE CD1 CE1 sing Y N 258 PHE CD1 HD1 sing N N 259 PHE CD2 CE2 doub Y N 260 PHE CD2 HD2 sing N N 261 PHE CE1 CZ doub Y N 262 PHE CE1 HE1 sing N N 263 PHE CE2 CZ sing Y N 264 PHE CE2 HE2 sing N N 265 PHE CZ HZ sing N N 266 PHE OXT HXT sing N N 267 PRO N CA sing N N 268 PRO N CD sing N N 269 PRO N H sing N N 270 PRO CA C sing N N 271 PRO CA CB sing N N 272 PRO CA HA sing N N 273 PRO C O doub N N 274 PRO C OXT sing N N 275 PRO CB CG sing N N 276 PRO CB HB2 sing N N 277 PRO CB HB3 sing N N 278 PRO CG CD sing N N 279 PRO CG HG2 sing N N 280 PRO CG HG3 sing N N 281 PRO CD HD2 sing N N 282 PRO CD HD3 sing N N 283 PRO OXT HXT sing N N 284 SER N CA sing N N 285 SER N H sing N N 286 SER N H2 sing N N 287 SER CA C sing N N 288 SER CA CB sing N N 289 SER CA HA sing N N 290 SER C O doub N N 291 SER C OXT sing N N 292 SER CB OG sing N N 293 SER CB HB2 sing N N 294 SER CB HB3 sing N N 295 SER OG HG sing N N 296 SER OXT HXT sing N N 297 THR N CA sing N N 298 THR N H sing N N 299 THR N H2 sing N N 300 THR CA C sing N N 301 THR CA CB sing N N 302 THR CA HA sing N N 303 THR C O doub N N 304 THR C OXT sing N N 305 THR CB OG1 sing N N 306 THR CB CG2 sing N N 307 THR CB HB sing N N 308 THR OG1 HG1 sing N N 309 THR CG2 HG21 sing N N 310 THR CG2 HG22 sing N N 311 THR CG2 HG23 sing N N 312 THR OXT HXT sing N N 313 TRP N CA sing N N 314 TRP N H sing N N 315 TRP N H2 sing N N 316 TRP CA C sing N N 317 TRP CA CB sing N N 318 TRP CA HA sing N N 319 TRP C O doub N N 320 TRP C OXT sing N N 321 TRP CB CG sing N N 322 TRP CB HB2 sing N N 323 TRP CB HB3 sing N N 324 TRP CG CD1 doub Y N 325 TRP CG CD2 sing Y N 326 TRP CD1 NE1 sing Y N 327 TRP CD1 HD1 sing N N 328 TRP CD2 CE2 doub Y N 329 TRP CD2 CE3 sing Y N 330 TRP NE1 CE2 sing Y N 331 TRP NE1 HE1 sing N N 332 TRP CE2 CZ2 sing Y N 333 TRP CE3 CZ3 doub Y N 334 TRP CE3 HE3 sing N N 335 TRP CZ2 CH2 doub Y N 336 TRP CZ2 HZ2 sing N N 337 TRP CZ3 CH2 sing Y N 338 TRP CZ3 HZ3 sing N N 339 TRP CH2 HH2 sing N N 340 TRP OXT HXT sing N N 341 TYR N CA sing N N 342 TYR N H sing N N 343 TYR N H2 sing N N 344 TYR CA C sing N N 345 TYR CA CB sing N N 346 TYR CA HA sing N N 347 TYR C O doub N N 348 TYR C OXT sing N N 349 TYR CB CG sing N N 350 TYR CB HB2 sing N N 351 TYR CB HB3 sing N N 352 TYR CG CD1 doub Y N 353 TYR CG CD2 sing Y N 354 TYR CD1 CE1 sing Y N 355 TYR CD1 HD1 sing N N 356 TYR CD2 CE2 doub Y N 357 TYR CD2 HD2 sing N N 358 TYR CE1 CZ doub Y N 359 TYR CE1 HE1 sing N N 360 TYR CE2 CZ sing Y N 361 TYR CE2 HE2 sing N N 362 TYR CZ OH sing N N 363 TYR OH HH sing N N 364 TYR OXT HXT sing N N 365 VAL N CA sing N N 366 VAL N H sing N N 367 VAL N H2 sing N N 368 VAL CA C sing N N 369 VAL CA CB sing N N 370 VAL CA HA sing N N 371 VAL C O doub N N 372 VAL C OXT sing N N 373 VAL CB CG1 sing N N 374 VAL CB CG2 sing N N 375 VAL CB HB sing N N 376 VAL CG1 HG11 sing N N 377 VAL CG1 HG12 sing N N 378 VAL CG1 HG13 sing N N 379 VAL CG2 HG21 sing N N 380 VAL CG2 HG22 sing N N 381 VAL CG2 HG23 sing N N 382 VAL OXT HXT sing N N 383 # _atom_sites.entry_id 5GNP _atom_sites.fract_transf_matrix[1][1] 0.011871 _atom_sites.fract_transf_matrix[1][2] 0.006854 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013707 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006673 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_