HEADER CELL CYCLE 25-JUL-16 5GO0 TITLE SOLUTION STRUCTURE OF NEDD8 FROM TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI (STRAIN 927/4 SOURCE 3 GUTAT10.1); SOURCE 4 ORGANISM_TAXID: 185431; SOURCE 5 STRAIN: 927/4 GUTAT10.1; SOURCE 6 GENE: TB927.4.2540; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 8 PPPARG4; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 1182032; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS UBIQUITIN-LIKE FOLD, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.WANG,S.LIAO,J.ZHANG,X.TU REVDAT 3 15-MAY-24 5GO0 1 REMARK REVDAT 2 14-JUN-23 5GO0 1 REMARK REVDAT 1 26-JUL-17 5GO0 0 JRNL AUTH R.WANG,S.LIAO,J.ZHANG,X.TU JRNL TITL SOLUTION STRUCTURE OF NEDD8 FROM TRYPANOSOMA BRUCEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300001168. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM NAH2PO4 SODIUM DIHYDROGEN REMARK 210 PHOSPHATE, 150 NM NACL SODIUM REMARK 210 CHLORIDE, 25 UM ARG ARGININE, 25 REMARK 210 UM GLU GLUTAMINE, 2 MM DTT REMARK 210 DITHIOTHREITOL, 2 UM EDTA REMARK 210 ETHYLENE DIAMINE TETRAACETIC REMARK 210 ACID, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D 1H-15N NOESY; REMARK 210 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRPIPE, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 16 59.44 -117.91 REMARK 500 1 SER A 17 83.18 -171.21 REMARK 500 1 THR A 23 -84.38 62.69 REMARK 500 1 ASN A 40 -72.56 174.40 REMARK 500 1 LEU A 51 93.39 56.37 REMARK 500 1 ALA A 64 44.86 -178.57 REMARK 500 2 THR A 16 59.10 -118.41 REMARK 500 2 SER A 17 82.85 -171.70 REMARK 500 2 THR A 23 -84.95 62.61 REMARK 500 2 ASN A 40 -71.27 175.02 REMARK 500 2 LEU A 51 93.39 56.72 REMARK 500 2 ALA A 64 45.05 -179.10 REMARK 500 3 THR A 16 59.15 -118.31 REMARK 500 3 SER A 17 82.90 -171.94 REMARK 500 3 THR A 23 -85.02 62.70 REMARK 500 3 ASN A 40 -71.28 174.85 REMARK 500 3 LEU A 51 93.44 56.83 REMARK 500 3 ALA A 64 44.90 -178.71 REMARK 500 4 SER A 17 82.57 -172.03 REMARK 500 4 ASN A 22 -50.51 -120.54 REMARK 500 4 THR A 23 -84.21 63.20 REMARK 500 4 ASN A 40 -72.46 175.61 REMARK 500 4 LEU A 51 93.50 63.36 REMARK 500 4 ALA A 64 45.09 -178.80 REMARK 500 5 SER A 17 82.97 -171.96 REMARK 500 5 THR A 23 -83.86 62.73 REMARK 500 5 ASN A 40 -72.49 174.57 REMARK 500 5 LEU A 51 93.47 56.50 REMARK 500 5 ALA A 64 44.94 -178.95 REMARK 500 6 THR A 16 61.03 -115.48 REMARK 500 6 SER A 17 82.96 -172.18 REMARK 500 6 THR A 23 -84.50 63.38 REMARK 500 6 ASN A 40 -71.27 176.38 REMARK 500 6 LEU A 51 93.56 56.59 REMARK 500 6 ALA A 64 51.57 -178.69 REMARK 500 7 THR A 16 59.15 -118.36 REMARK 500 7 SER A 17 82.94 -171.03 REMARK 500 7 ASN A 22 -50.41 -120.24 REMARK 500 7 THR A 23 -84.00 63.27 REMARK 500 7 ASN A 40 -72.70 175.61 REMARK 500 7 LEU A 51 93.53 63.45 REMARK 500 7 ALA A 64 44.84 -178.96 REMARK 500 8 SER A 17 82.61 -172.04 REMARK 500 8 THR A 23 -85.51 63.01 REMARK 500 8 ASN A 40 -72.34 175.95 REMARK 500 8 LEU A 51 93.46 56.38 REMARK 500 8 LYS A 55 36.82 -99.56 REMARK 500 8 ALA A 64 44.99 -178.87 REMARK 500 9 THR A 16 59.01 -118.58 REMARK 500 9 SER A 17 82.34 -170.59 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36012 RELATED DB: BMRB DBREF 5GO0 A 1 78 UNP Q584D3 Q584D3_TRYB2 1 78 SEQADV 5GO0 MET A -7 UNP Q584D3 EXPRESSION TAG SEQADV 5GO0 GLY A -6 UNP Q584D3 EXPRESSION TAG SEQADV 5GO0 HIS A -5 UNP Q584D3 EXPRESSION TAG SEQADV 5GO0 HIS A -4 UNP Q584D3 EXPRESSION TAG SEQADV 5GO0 HIS A -3 UNP Q584D3 EXPRESSION TAG SEQADV 5GO0 HIS A -2 UNP Q584D3 EXPRESSION TAG SEQADV 5GO0 HIS A -1 UNP Q584D3 EXPRESSION TAG SEQADV 5GO0 HIS A 0 UNP Q584D3 EXPRESSION TAG SEQRES 1 A 86 MET GLY HIS HIS HIS HIS HIS HIS MET LEU LEU LYS VAL SEQRES 2 A 86 LYS THR VAL SER ASN LYS VAL ILE GLN ILE THR SER LEU SEQRES 3 A 86 THR ASP ASP ASN THR ILE ALA GLU LEU LYS GLY LYS LEU SEQRES 4 A 86 GLU GLU SER GLU GLY ILE PRO GLY ASN MET ILE ARG LEU SEQRES 5 A 86 VAL TYR GLN GLY LYS GLN LEU GLU ASP GLU LYS ARG LEU SEQRES 6 A 86 LYS ASP TYR GLN MET SER ALA GLY ALA THR PHE HIS MET SEQRES 7 A 86 VAL VAL ALA LEU ARG ALA GLY CYS HELIX 1 AA1 THR A 23 GLU A 35 1 13 HELIX 2 AA2 GLU A 52 GLU A 54 5 3 HELIX 3 AA3 LYS A 55 GLN A 61 1 7 SHEET 1 AA1 4 VAL A 12 THR A 16 0 SHEET 2 AA1 4 LEU A 2 LYS A 6 -1 N VAL A 5 O ILE A 13 SHEET 3 AA1 4 GLY A 65 MET A 70 1 O THR A 67 N LYS A 4 SHEET 4 AA1 4 ARG A 43 TYR A 46 -1 N ARG A 43 O MET A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1