HEADER PROTEIN BINDING 27-JUL-16 5GOJ TITLE LYS63-LINKED DI-UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: D-UBIQUITIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606 KEYWDS POLYUBIQUITIN CHAINS, QUASI-RACEMIC CRYSTAL, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.GAO,M.PAN,Y.ZHENG,L.LIU REVDAT 5 15-NOV-23 5GOJ 1 REMARK REVDAT 4 08-NOV-23 5GOJ 1 REMARK REVDAT 3 09-FEB-22 5GOJ 1 REMARK REVDAT 2 16-NOV-16 5GOJ 1 JRNL REVDAT 1 02-NOV-16 5GOJ 0 JRNL AUTH S.GAO,M.PAN,Y.ZHENG,Y.HUANG,Q.ZHENG,D.SUN,L.LU,X.TAN,X.TAN, JRNL AUTH 2 H.LAN,J.WANG,T.WANG,J.WANG,L.LIU JRNL TITL MONOMER/OLIGOMER QUASI-RACEMIC PROTEIN CRYSTALLOGRAPHY JRNL REF J.AM.CHEM.SOC. V. 138 14497 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27768314 JRNL DOI 10.1021/JACS.6B09545 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 17087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0291 - 2.8143 0.99 2883 156 0.2160 0.2056 REMARK 3 2 2.8143 - 2.2339 0.99 2749 123 0.2566 0.2747 REMARK 3 3 2.2339 - 1.9515 0.99 2727 135 0.2449 0.3081 REMARK 3 4 1.9515 - 1.7731 0.99 2658 154 0.3057 0.2910 REMARK 3 5 1.7731 - 1.6460 0.99 2685 137 0.3442 0.3808 REMARK 3 6 1.6460 - 1.5490 0.95 2556 124 0.4349 0.4809 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1209 REMARK 3 ANGLE : 0.999 1625 REMARK 3 CHIRALITY : 0.067 194 REMARK 3 PLANARITY : 0.005 209 REMARK 3 DIHEDRAL : 20.534 619 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6098 8.4621 -5.0079 REMARK 3 T TENSOR REMARK 3 T11: 0.2901 T22: 0.1816 REMARK 3 T33: 0.2377 T12: -0.0041 REMARK 3 T13: -0.0507 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.4866 L22: 0.3829 REMARK 3 L33: 0.2847 L12: 0.3965 REMARK 3 L13: -0.1575 L23: -0.1815 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: 0.1424 S13: -0.1392 REMARK 3 S21: -0.5159 S22: 0.3065 S23: 0.4097 REMARK 3 S31: -0.1249 S32: 0.1137 S33: 0.0127 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4749 10.4539 2.9653 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.3037 REMARK 3 T33: 0.3087 T12: 0.0110 REMARK 3 T13: 0.0108 T23: 0.0901 REMARK 3 L TENSOR REMARK 3 L11: 0.9638 L22: 0.9508 REMARK 3 L33: 2.9968 L12: 0.6099 REMARK 3 L13: -1.0439 L23: -1.0656 REMARK 3 S TENSOR REMARK 3 S11: 0.3450 S12: 0.5888 S13: 0.2800 REMARK 3 S21: 0.6471 S22: 0.6538 S23: 1.0498 REMARK 3 S31: -0.5167 S32: -0.4656 S33: 0.6817 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3686 6.7756 7.7228 REMARK 3 T TENSOR REMARK 3 T11: 0.2429 T22: 0.1901 REMARK 3 T33: 0.2381 T12: -0.0566 REMARK 3 T13: -0.0298 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.0896 L22: 0.0805 REMARK 3 L33: 0.0636 L12: -0.0197 REMARK 3 L13: 0.0027 L23: -0.0649 REMARK 3 S TENSOR REMARK 3 S11: 0.6246 S12: -0.1771 S13: -0.0003 REMARK 3 S21: 0.1929 S22: -0.2739 S23: -0.1995 REMARK 3 S31: 0.0028 S32: 0.3557 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4829 15.2182 1.9377 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.3058 REMARK 3 T33: 0.1849 T12: 0.0045 REMARK 3 T13: 0.0514 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0579 L22: 0.7410 REMARK 3 L33: 0.5699 L12: -0.0553 REMARK 3 L13: -0.1409 L23: -0.2751 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: 0.3286 S13: 0.2565 REMARK 3 S21: 0.6152 S22: -0.1927 S23: -0.6958 REMARK 3 S31: -0.5744 S32: 0.6207 S33: -0.0242 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2550 16.0674 -7.5209 REMARK 3 T TENSOR REMARK 3 T11: 0.4356 T22: 0.2189 REMARK 3 T33: 0.2477 T12: -0.0820 REMARK 3 T13: -0.0008 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.6461 L22: 0.4751 REMARK 3 L33: 0.0846 L12: -0.5188 REMARK 3 L13: -0.2271 L23: 0.1647 REMARK 3 S TENSOR REMARK 3 S11: 0.2089 S12: 0.2874 S13: 0.3485 REMARK 3 S21: -0.7152 S22: -0.6163 S23: -0.0615 REMARK 3 S31: -0.5213 S32: 0.4702 S33: -0.0352 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9177 4.6535 6.6098 REMARK 3 T TENSOR REMARK 3 T11: 0.1980 T22: 0.2605 REMARK 3 T33: 0.2049 T12: -0.0643 REMARK 3 T13: 0.0669 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.4407 L22: 0.7808 REMARK 3 L33: 0.1870 L12: -0.4747 REMARK 3 L13: -0.0808 L23: 0.2592 REMARK 3 S TENSOR REMARK 3 S11: 0.8243 S12: -0.0489 S13: 0.0875 REMARK 3 S21: -0.0300 S22: 0.0892 S23: 0.3326 REMARK 3 S31: -0.8527 S32: 0.2487 S33: 0.1472 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0850 28.7065 19.1816 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.2110 REMARK 3 T33: 0.2131 T12: 0.0005 REMARK 3 T13: 0.0092 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.9910 L22: 1.0783 REMARK 3 L33: 0.7401 L12: -0.6693 REMARK 3 L13: -0.3548 L23: 0.3501 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: -0.1762 S13: -0.1110 REMARK 3 S21: 0.1638 S22: -0.0153 S23: 0.0474 REMARK 3 S31: 0.2592 S32: 0.0384 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17136 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.549 REMARK 200 RESOLUTION RANGE LOW (A) : 36.019 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.58 REMARK 200 R MERGE FOR SHELL (I) : 2.12600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 26.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS HYDROCHLORIDE PH8.5, 2.0M REMARK 280 AMMONIUM PHOSPHATE MONOBASIC, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 20.22000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.22000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -35.80000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 109 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 72 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 103 O HOH B 110 2.00 REMARK 500 OD2 DAS B 39 O HOH B 101 2.04 REMARK 500 O HOH B 144 O HOH B 151 2.19 REMARK 500 OE1 DGL B 51 O HOH B 102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 135 O HOH A 135 2655 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 129.95 93.89 REMARK 500 DAR B 74 106.00 -175.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GO7 RELATED DB: PDB REMARK 900 RELATED ID: 5GO8 RELATED DB: PDB REMARK 900 RELATED ID: 5GOB RELATED DB: PDB REMARK 900 RELATED ID: 5GOC RELATED DB: PDB REMARK 900 RELATED ID: 5GOD RELATED DB: PDB REMARK 900 RELATED ID: 5GOG RELATED DB: PDB REMARK 900 RELATED ID: 5GOH RELATED DB: PDB REMARK 900 RELATED ID: 5GOI RELATED DB: PDB REMARK 900 RELATED ID: 5GOK RELATED DB: PDB DBREF 5GOJ A 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 5GOJ B 1 76 PDB 5GOJ 5GOJ 1 76 SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 76 DNE DGN DIL DPN DVA DLY DTH DLE DTH GLY DLY DTH DIL SEQRES 2 B 76 DTH DLE DGL DVA DGL DPR DSN DAS DTH DIL DGL DSG DVA SEQRES 3 B 76 DLY DAL DLY DIL DGN DAS DLY DGL GLY DIL DPR DPR DAS SEQRES 4 B 76 DGN DGN DAR DLE DIL DPN DAL GLY DLY DGN DLE DGL DAS SEQRES 5 B 76 GLY DAR DTH DLE DSN DAS DTY DSG DIL DGN DLY DGL DSN SEQRES 6 B 76 DTH DLE DHI DLE DVA DLE DAR DLE DAR GLY GLY HET DNE B 1 8 HET DGN B 2 9 HET DIL B 3 8 HET DPN B 4 11 HET DVA B 5 7 HET DLY B 6 9 HET DTH B 7 7 HET DLE B 8 8 HET DTH B 9 7 HET DLY B 11 9 HET DTH B 12 7 HET DIL B 13 8 HET DTH B 14 7 HET DLE B 15 8 HET DGL B 16 9 HET DVA B 17 7 HET DGL B 18 9 HET DPR B 19 7 HET DSN B 20 6 HET DAS B 21 8 HET DTH B 22 7 HET DIL B 23 8 HET DGL B 24 9 HET DSG B 25 8 HET DVA B 26 7 HET DLY B 27 9 HET DAL B 28 5 HET DLY B 29 9 HET DIL B 30 8 HET DGN B 31 9 HET DAS B 32 8 HET DLY B 33 9 HET DGL B 34 9 HET DIL B 36 8 HET DPR B 37 7 HET DPR B 38 7 HET DAS B 39 8 HET DGN B 40 9 HET DGN B 41 9 HET DAR B 42 11 HET DLE B 43 8 HET DIL B 44 8 HET DPN B 45 11 HET DAL B 46 5 HET DLY B 48 9 HET DGN B 49 9 HET DLE B 50 8 HET DGL B 51 9 HET DAS B 52 8 HET DAR B 54 11 HET DTH B 55 7 HET DLE B 56 8 HET DSN B 57 6 HET DAS B 58 8 HET DTY B 59 12 HET DSG B 60 8 HET DIL B 61 8 HET DGN B 62 9 HET DLY B 63 9 HET DGL B 64 9 HET DSN B 65 6 HET DTH B 66 7 HET DLE B 67 8 HET DHI B 68 10 HET DLE B 69 8 HET DVA B 70 7 HET DLE B 71 8 HET DAR B 72 11 HET DLE B 73 8 HET DAR B 74 11 HETNAM DNE D-NORLEUCINE HETNAM DGN D-GLUTAMINE HETNAM DIL D-ISOLEUCINE HETNAM DPN D-PHENYLALANINE HETNAM DVA D-VALINE HETNAM DLY D-LYSINE HETNAM DTH D-THREONINE HETNAM DLE D-LEUCINE HETNAM DGL D-GLUTAMIC ACID HETNAM DPR D-PROLINE HETNAM DSN D-SERINE HETNAM DAS D-ASPARTIC ACID HETNAM DSG D-ASPARAGINE HETNAM DAL D-ALANINE HETNAM DAR D-ARGININE HETNAM DTY D-TYROSINE HETNAM DHI D-HISTIDINE FORMUL 2 DNE C6 H13 N O2 FORMUL 2 DGN 6(C5 H10 N2 O3) FORMUL 2 DIL 7(C6 H13 N O2) FORMUL 2 DPN 2(C9 H11 N O2) FORMUL 2 DVA 4(C5 H11 N O2) FORMUL 2 DLY 7(C6 H14 N2 O2) FORMUL 2 DTH 7(C4 H9 N O3) FORMUL 2 DLE 9(C6 H13 N O2) FORMUL 2 DGL 6(C5 H9 N O4) FORMUL 2 DPR 3(C5 H9 N O2) FORMUL 2 DSN 3(C3 H7 N O3) FORMUL 2 DAS 5(C4 H7 N O4) FORMUL 2 DSG 2(C4 H8 N2 O3) FORMUL 2 DAL 2(C3 H7 N O2) FORMUL 2 DAR 4(C6 H15 N4 O2 1+) FORMUL 2 DTY C9 H11 N O3 FORMUL 2 DHI C6 H10 N3 O2 1+ FORMUL 3 HOH *99(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 DTH B 22 GLY B 35 1 14 HELIX 5 AA5 DPR B 37 DAS B 39 5 3 HELIX 6 AA6 DLE B 56 DSG B 60 5 5 SHEET 1 AA1 5 THR A 12 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 THR A 7 -1 N ILE A 3 O LEU A 15 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 DTH B 12 DGL B 16 0 SHEET 2 AA2 5 DGN B 2 DLY B 6 -1 N DVA B 5 O DIL B 13 SHEET 3 AA2 5 DTH B 66 DLE B 71 1 O DLE B 67 N DPN B 4 SHEET 4 AA2 5 DGN B 41 DPN B 45 -1 N DIL B 44 O DHI B 68 SHEET 5 AA2 5 DLY B 48 DGN B 49 -1 O DLY B 48 N DPN B 45 LINK C DNE B 1 N DGN B 2 1555 1555 1.32 LINK C DGN B 2 N DIL B 3 1555 1555 1.33 LINK C DIL B 3 N DPN B 4 1555 1555 1.32 LINK C DPN B 4 N DVA B 5 1555 1555 1.33 LINK C DVA B 5 N DLY B 6 1555 1555 1.33 LINK C DLY B 6 N DTH B 7 1555 1555 1.34 LINK C DTH B 7 N DLE B 8 1555 1555 1.33 LINK C DLE B 8 N DTH B 9 1555 1555 1.33 LINK C DTH B 9 N GLY B 10 1555 1555 1.33 LINK C GLY B 10 N DLY B 11 1555 1555 1.33 LINK C DLY B 11 N DTH B 12 1555 1555 1.33 LINK C DTH B 12 N DIL B 13 1555 1555 1.33 LINK C DIL B 13 N DTH B 14 1555 1555 1.33 LINK C DTH B 14 N DLE B 15 1555 1555 1.34 LINK C DLE B 15 N DGL B 16 1555 1555 1.33 LINK C DGL B 16 N DVA B 17 1555 1555 1.33 LINK C DVA B 17 N DGL B 18 1555 1555 1.32 LINK C DGL B 18 N DPR B 19 1555 1555 1.34 LINK C DPR B 19 N DSN B 20 1555 1555 1.33 LINK C DSN B 20 N DAS B 21 1555 1555 1.33 LINK C DAS B 21 N DTH B 22 1555 1555 1.33 LINK C DTH B 22 N DIL B 23 1555 1555 1.33 LINK C DIL B 23 N DGL B 24 1555 1555 1.33 LINK C DGL B 24 N DSG B 25 1555 1555 1.33 LINK C DSG B 25 N DVA B 26 1555 1555 1.33 LINK C DVA B 26 N DLY B 27 1555 1555 1.33 LINK C DLY B 27 N DAL B 28 1555 1555 1.33 LINK C DAL B 28 N DLY B 29 1555 1555 1.34 LINK C DLY B 29 N DIL B 30 1555 1555 1.33 LINK C DIL B 30 N DGN B 31 1555 1555 1.33 LINK C DGN B 31 N DAS B 32 1555 1555 1.33 LINK C DAS B 32 N DLY B 33 1555 1555 1.33 LINK C DLY B 33 N DGL B 34 1555 1555 1.33 LINK C DGL B 34 N GLY B 35 1555 1555 1.33 LINK C GLY B 35 N DIL B 36 1555 1555 1.33 LINK C DIL B 36 N DPR B 37 1555 1555 1.34 LINK C DPR B 37 N DPR B 38 1555 1555 1.34 LINK C DPR B 38 N DAS B 39 1555 1555 1.33 LINK C DAS B 39 N DGN B 40 1555 1555 1.33 LINK C DGN B 40 N DGN B 41 1555 1555 1.33 LINK C DGN B 41 N DAR B 42 1555 1555 1.33 LINK C DAR B 42 N DLE B 43 1555 1555 1.34 LINK C DLE B 43 N DIL B 44 1555 1555 1.33 LINK C DIL B 44 N DPN B 45 1555 1555 1.33 LINK C DPN B 45 N DAL B 46 1555 1555 1.33 LINK C DAL B 46 N GLY B 47 1555 1555 1.33 LINK C GLY B 47 N DLY B 48 1555 1555 1.33 LINK C DLY B 48 N DGN B 49 1555 1555 1.33 LINK C DGN B 49 N DLE B 50 1555 1555 1.33 LINK C DLE B 50 N DGL B 51 1555 1555 1.33 LINK C DGL B 51 N DAS B 52 1555 1555 1.33 LINK C DAS B 52 N GLY B 53 1555 1555 1.33 LINK C GLY B 53 N DAR B 54 1555 1555 1.33 LINK C DAR B 54 N DTH B 55 1555 1555 1.33 LINK C DTH B 55 N DLE B 56 1555 1555 1.33 LINK C DLE B 56 N DSN B 57 1555 1555 1.33 LINK C DSN B 57 N DAS B 58 1555 1555 1.34 LINK C DAS B 58 N DTY B 59 1555 1555 1.33 LINK C DTY B 59 N DSG B 60 1555 1555 1.33 LINK C DSG B 60 N DIL B 61 1555 1555 1.33 LINK C DIL B 61 N DGN B 62 1555 1555 1.33 LINK C DGN B 62 N DLY B 63 1555 1555 1.33 LINK C DLY B 63 N DGL B 64 1555 1555 1.33 LINK C DGL B 64 N DSN B 65 1555 1555 1.33 LINK C DSN B 65 N DTH B 66 1555 1555 1.33 LINK C DTH B 66 N DLE B 67 1555 1555 1.34 LINK C DLE B 67 N DHI B 68 1555 1555 1.33 LINK C DHI B 68 N DLE B 69 1555 1555 1.33 LINK C DLE B 69 N DVA B 70 1555 1555 1.33 LINK C DVA B 70 N DLE B 71 1555 1555 1.33 LINK C DLE B 71 N DAR B 72 1555 1555 1.33 LINK C DAR B 72 N DLE B 73 1555 1555 1.33 LINK C DLE B 73 N DAR B 74 1555 1555 1.33 LINK C DAR B 74 N GLY B 75 1555 1555 1.33 CRYST1 40.440 79.230 35.800 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024728 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027933 0.00000