HEADER HYDROLASE 27-JUL-16 5GOM TITLE TRUNCATED MITOFUSIN-1, TRANSITION-LIKE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOFUSIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-362,UNP RESIDUES 696-741; COMPND 5 SYNONYM: FZO HOMOLOG,TRANSMEMBRANE GTPASE MFN1; COMPND 6 EC: 3.6.5.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MFN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, MITOCHONDRIAL FUSION EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.CAO,S.GAO REVDAT 3 20-MAR-24 5GOM 1 REMARK REVDAT 2 08-MAR-17 5GOM 1 JRNL REVDAT 1 01-FEB-17 5GOM 0 JRNL AUTH Y.L.CAO,S.MENG,Y.CHEN,J.X.FENG,D.D.GU,B.YU,Y.J.LI,J.Y.YANG, JRNL AUTH 2 S.LIAO,D.C.CHAN,S.GAO JRNL TITL MFN1 STRUCTURES REVEAL NUCLEOTIDE-TRIGGERED DIMERIZATION JRNL TITL 2 CRITICAL FOR MITOCHONDRIAL FUSION JRNL REF NATURE V. 542 372 2017 JRNL REFN ESSN 1476-4687 JRNL PMID 28114303 JRNL DOI 10.1038/NATURE21077 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 46389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6970 - 7.1963 0.96 2495 160 0.1500 0.2122 REMARK 3 2 7.1963 - 5.7148 1.00 2597 147 0.1987 0.2623 REMARK 3 3 5.7148 - 4.9933 1.00 2611 142 0.1690 0.2308 REMARK 3 4 4.9933 - 4.5371 1.00 2557 146 0.1508 0.1877 REMARK 3 5 4.5371 - 4.2121 1.00 2627 140 0.1572 0.2256 REMARK 3 6 4.2121 - 3.9639 1.00 2653 146 0.1824 0.2894 REMARK 3 7 3.9639 - 3.7654 1.00 2599 137 0.2053 0.2753 REMARK 3 8 3.7654 - 3.6016 1.00 2561 150 0.2155 0.2934 REMARK 3 9 3.6016 - 3.4630 1.00 2596 159 0.2259 0.3359 REMARK 3 10 3.4630 - 3.3435 1.00 2582 160 0.2279 0.2787 REMARK 3 11 3.3435 - 3.2390 1.00 2627 122 0.2270 0.2764 REMARK 3 12 3.2390 - 3.1464 1.00 2634 151 0.2411 0.3969 REMARK 3 13 3.1464 - 3.0636 1.00 2516 125 0.2351 0.3017 REMARK 3 14 3.0636 - 2.9888 1.00 2749 108 0.2358 0.3285 REMARK 3 15 2.9888 - 2.9209 1.00 2610 131 0.2286 0.3911 REMARK 3 16 2.9209 - 2.8588 0.99 2561 131 0.2489 0.3738 REMARK 3 17 2.8588 - 2.8016 0.92 2454 105 0.2716 0.3229 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6667 REMARK 3 ANGLE : 0.948 8993 REMARK 3 CHIRALITY : 0.046 1011 REMARK 3 PLANARITY : 0.005 1150 REMARK 3 DIHEDRAL : 19.833 4068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5462 20.4273 6.5172 REMARK 3 T TENSOR REMARK 3 T11: 0.7998 T22: 1.9230 REMARK 3 T33: 0.8228 T12: 0.1240 REMARK 3 T13: 0.0699 T23: 0.0841 REMARK 3 L TENSOR REMARK 3 L11: 9.4059 L22: 4.2184 REMARK 3 L33: 4.5564 L12: 1.8053 REMARK 3 L13: -6.0123 L23: -0.9689 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: -1.0528 S13: -1.6364 REMARK 3 S21: 0.1447 S22: -0.4087 S23: -1.4021 REMARK 3 S31: -0.1593 S32: 1.7315 S33: 0.4641 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1055 18.6308 26.2366 REMARK 3 T TENSOR REMARK 3 T11: 0.5357 T22: 0.4474 REMARK 3 T33: 0.3448 T12: 0.2083 REMARK 3 T13: 0.1583 T23: 0.1269 REMARK 3 L TENSOR REMARK 3 L11: 6.5940 L22: 3.2838 REMARK 3 L33: 4.5559 L12: 0.5826 REMARK 3 L13: -0.0229 L23: -0.2276 REMARK 3 S TENSOR REMARK 3 S11: 0.2437 S12: -0.2383 S13: -0.1844 REMARK 3 S21: 0.0810 S22: -0.2232 S23: -0.0852 REMARK 3 S31: -0.2204 S32: -0.0736 S33: -0.0288 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 735 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1510 25.5073 1.2210 REMARK 3 T TENSOR REMARK 3 T11: 0.6112 T22: 1.1648 REMARK 3 T33: 0.6014 T12: 0.0430 REMARK 3 T13: 0.0461 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 5.4713 L22: 2.8054 REMARK 3 L33: 4.1554 L12: 1.3051 REMARK 3 L13: -4.1481 L23: -0.8028 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: 1.2315 S13: 0.2775 REMARK 3 S21: -0.0373 S22: 0.1844 S23: -0.8669 REMARK 3 S31: -0.2980 S32: 0.1306 S33: -0.1583 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.0145 33.9178 71.1612 REMARK 3 T TENSOR REMARK 3 T11: 0.5636 T22: 3.2850 REMARK 3 T33: 0.2282 T12: 0.2086 REMARK 3 T13: 0.2562 T23: -0.4632 REMARK 3 L TENSOR REMARK 3 L11: 1.6034 L22: 1.8732 REMARK 3 L33: 3.3930 L12: -0.4033 REMARK 3 L13: -1.5251 L23: 0.9553 REMARK 3 S TENSOR REMARK 3 S11: -0.3735 S12: -0.2074 S13: -0.1397 REMARK 3 S21: -0.2254 S22: 0.0495 S23: -0.2551 REMARK 3 S31: -0.7966 S32: -0.8395 S33: -0.5067 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.4386 26.2173 41.0945 REMARK 3 T TENSOR REMARK 3 T11: 0.7967 T22: 1.1734 REMARK 3 T33: 0.6769 T12: 0.2499 REMARK 3 T13: 0.0390 T23: -0.2148 REMARK 3 L TENSOR REMARK 3 L11: 5.7787 L22: 3.3868 REMARK 3 L33: 5.8087 L12: -0.5880 REMARK 3 L13: -0.8459 L23: -1.1983 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.1740 S13: 0.8378 REMARK 3 S21: 0.1839 S22: -0.1179 S23: 0.6464 REMARK 3 S31: -1.2356 S32: -1.1752 S33: 0.0602 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4180 14.1046 47.8770 REMARK 3 T TENSOR REMARK 3 T11: 0.5194 T22: 1.2812 REMARK 3 T33: 0.4402 T12: -0.0102 REMARK 3 T13: 0.0798 T23: 0.0883 REMARK 3 L TENSOR REMARK 3 L11: 3.4879 L22: 2.7225 REMARK 3 L33: 6.3606 L12: 0.0133 REMARK 3 L13: -0.5654 L23: -0.1810 REMARK 3 S TENSOR REMARK 3 S11: 0.2044 S12: -1.3972 S13: -0.0903 REMARK 3 S21: 0.1270 S22: -0.4063 S23: -0.1343 REMARK 3 S31: -0.2646 S32: 0.1324 S33: 0.2266 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 736 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.6126 25.4295 75.0645 REMARK 3 T TENSOR REMARK 3 T11: 0.7328 T22: 2.7091 REMARK 3 T33: 0.5848 T12: -0.0354 REMARK 3 T13: 0.1852 T23: -0.3710 REMARK 3 L TENSOR REMARK 3 L11: 2.1167 L22: 0.4295 REMARK 3 L33: 3.6174 L12: -1.5614 REMARK 3 L13: -3.1182 L23: 1.8468 REMARK 3 S TENSOR REMARK 3 S11: -0.3070 S12: -0.9387 S13: -0.3511 REMARK 3 S21: 0.3379 S22: -0.0024 S23: 0.0485 REMARK 3 S31: 0.4512 S32: -0.1996 S33: 0.2777 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 5GOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300001179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 181542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.802 REMARK 200 RESOLUTION RANGE LOW (A) : 48.697 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES (PH 6.0), 240MM NACL, 36% REMARK 280 PENTAERYTHRIOL PROPOXYLATE (5/4 PO/OH), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.05400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.99100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.05400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.99100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 PRO A -5 REMARK 465 HIS A -4 REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 736 REMARK 465 SER A 737 REMARK 465 ASN A 738 REMARK 465 GLU A 739 REMARK 465 GLU A 740 REMARK 465 SER A 741 REMARK 465 GLY B -6 REMARK 465 PRO B -5 REMARK 465 HIS B -4 REMARK 465 MET B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 VAL B 184 REMARK 465 THR B 185 REMARK 465 SER B 737 REMARK 465 ASN B 738 REMARK 465 GLU B 739 REMARK 465 GLU B 740 REMARK 465 SER B 741 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 308 NH2 ARG A 313 2.16 REMARK 500 O GLU B 308 NH2 ARG B 313 2.16 REMARK 500 O ASN B 353 OG SER B 357 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 101 C - N - CA ANGL. DEV. = -15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 44 42.92 -80.97 REMARK 500 LEU A 45 94.92 -168.10 REMARK 500 SER A 103 28.58 -152.99 REMARK 500 CYS A 156 173.69 -59.57 REMARK 500 ALA A 165 31.05 -88.36 REMARK 500 ASP A 172 35.30 -87.32 REMARK 500 THR A 186 -48.07 75.73 REMARK 500 SER A 210 -166.25 -119.98 REMARK 500 LEU A 212 107.69 -50.15 REMARK 500 LYS A 229 72.07 39.40 REMARK 500 ASN A 236 89.02 -53.90 REMARK 500 LYS A 269 23.75 47.75 REMARK 500 LYS A 293 -18.76 -45.91 REMARK 500 ARG A 697 -55.97 -140.03 REMARK 500 SER B 85 4.17 83.96 REMARK 500 ILE B 92 -55.24 -29.35 REMARK 500 ASP B 149 96.31 -61.03 REMARK 500 ASP B 172 41.75 -90.49 REMARK 500 ASP B 189 -71.28 -54.09 REMARK 500 ASP B 193 -141.22 37.04 REMARK 500 CYS B 196 -20.00 -142.01 REMARK 500 SER B 210 -164.64 -108.83 REMARK 500 ARG B 226 44.58 -89.02 REMARK 500 LYS B 229 39.81 38.84 REMARK 500 ASN B 278 32.73 -88.11 REMARK 500 SER B 369 19.00 -162.21 REMARK 500 ARG B 716 -35.29 -39.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GOF RELATED DB: PDB REMARK 900 RELATED ID: 5GOE RELATED DB: PDB REMARK 900 RELATED ID: 5GO4 RELATED DB: PDB DBREF 5GOM A 1 362 UNP Q8IWA4 MFN1_HUMAN 1 362 DBREF 5GOM A 696 741 UNP Q8IWA4 MFN1_HUMAN 696 741 DBREF 5GOM B 1 362 UNP Q8IWA4 MFN1_HUMAN 1 362 DBREF 5GOM B 696 741 UNP Q8IWA4 MFN1_HUMAN 696 741 SEQADV 5GOM GLY A -6 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM PRO A -5 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM HIS A -4 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM MET A -3 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM GLY A -2 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM GLY A -1 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM SER A 0 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM GLU A 363 UNP Q8IWA4 LINKER SEQADV 5GOM ASP A 364 UNP Q8IWA4 LINKER SEQADV 5GOM LYS A 365 UNP Q8IWA4 LINKER SEQADV 5GOM ARG A 366 UNP Q8IWA4 LINKER SEQADV 5GOM HIS A 367 UNP Q8IWA4 LINKER SEQADV 5GOM TYR A 368 UNP Q8IWA4 LINKER SEQADV 5GOM SER A 369 UNP Q8IWA4 LINKER SEQADV 5GOM GLY B -6 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM PRO B -5 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM HIS B -4 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM MET B -3 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM GLY B -2 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM GLY B -1 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM SER B 0 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOM GLU B 363 UNP Q8IWA4 LINKER SEQADV 5GOM ASP B 364 UNP Q8IWA4 LINKER SEQADV 5GOM LYS B 365 UNP Q8IWA4 LINKER SEQADV 5GOM ARG B 366 UNP Q8IWA4 LINKER SEQADV 5GOM HIS B 367 UNP Q8IWA4 LINKER SEQADV 5GOM TYR B 368 UNP Q8IWA4 LINKER SEQADV 5GOM SER B 369 UNP Q8IWA4 LINKER SEQRES 1 A 422 GLY PRO HIS MET GLY GLY SER MET ALA GLU PRO VAL SER SEQRES 2 A 422 PRO LEU LYS HIS PHE VAL LEU ALA LYS LYS ALA ILE THR SEQRES 3 A 422 ALA ILE PHE ASP GLN LEU LEU GLU PHE VAL THR GLU GLY SEQRES 4 A 422 SER HIS PHE VAL GLU ALA THR TYR LYS ASN PRO GLU LEU SEQRES 5 A 422 ASP ARG ILE ALA THR GLU ASP ASP LEU VAL GLU MET GLN SEQRES 6 A 422 GLY TYR LYS ASP LYS LEU SER ILE ILE GLY GLU VAL LEU SEQRES 7 A 422 SER ARG ARG HIS MET LYS VAL ALA PHE PHE GLY ARG THR SEQRES 8 A 422 SER SER GLY LYS SER SER VAL ILE ASN ALA MET LEU TRP SEQRES 9 A 422 ASP LYS VAL LEU PRO SER GLY ILE GLY HIS ILE THR ASN SEQRES 10 A 422 CYS PHE LEU SER VAL GLU GLY THR ASP GLY ASP LYS ALA SEQRES 11 A 422 TYR LEU MET THR GLU GLY SER ASP GLU LYS LYS SER VAL SEQRES 12 A 422 LYS THR VAL ASN GLN LEU ALA HIS ALA LEU HIS MET ASP SEQRES 13 A 422 LYS ASP LEU LYS ALA GLY CYS LEU VAL ARG VAL PHE TRP SEQRES 14 A 422 PRO LYS ALA LYS CYS ALA LEU LEU ARG ASP ASP LEU VAL SEQRES 15 A 422 LEU VAL ASP SER PRO GLY THR ASP VAL THR THR GLU LEU SEQRES 16 A 422 ASP SER TRP ILE ASP LYS PHE CYS LEU ASP ALA ASP VAL SEQRES 17 A 422 PHE VAL LEU VAL ALA ASN SER GLU SER THR LEU MET ASN SEQRES 18 A 422 THR GLU LYS HIS PHE PHE HIS LYS VAL ASN GLU ARG LEU SEQRES 19 A 422 SER LYS PRO ASN ILE PHE ILE LEU ASN ASN ARG TRP ASP SEQRES 20 A 422 ALA SER ALA SER GLU PRO GLU TYR MET GLU ASP VAL ARG SEQRES 21 A 422 ARG GLN HIS MET GLU ARG CYS LEU HIS PHE LEU VAL GLU SEQRES 22 A 422 GLU LEU LYS VAL VAL ASN ALA LEU GLU ALA GLN ASN ARG SEQRES 23 A 422 ILE PHE PHE VAL SER ALA LYS GLU VAL LEU SER ALA ARG SEQRES 24 A 422 LYS GLN LYS ALA GLN GLY MET PRO GLU SER GLY VAL ALA SEQRES 25 A 422 LEU ALA GLU GLY PHE HIS ALA ARG LEU GLN GLU PHE GLN SEQRES 26 A 422 ASN PHE GLU GLN ILE PHE GLU GLU CYS ILE SER GLN SER SEQRES 27 A 422 ALA VAL LYS THR LYS PHE GLU GLN HIS THR ILE ARG ALA SEQRES 28 A 422 LYS GLN ILE LEU ALA THR VAL LYS ASN ILE MET ASP SER SEQRES 29 A 422 VAL ASN LEU ALA ALA GLU ASP LYS ARG HIS TYR SER ALA SEQRES 30 A 422 ARG LEU PRO LYS GLU ILE ASP GLN LEU GLU LYS ILE GLN SEQRES 31 A 422 ASN ASN SER LYS LEU LEU ARG ASN LYS ALA VAL GLN LEU SEQRES 32 A 422 GLU ASN GLU LEU GLU ASN PHE THR LYS GLN PHE LEU PRO SEQRES 33 A 422 SER SER ASN GLU GLU SER SEQRES 1 B 422 GLY PRO HIS MET GLY GLY SER MET ALA GLU PRO VAL SER SEQRES 2 B 422 PRO LEU LYS HIS PHE VAL LEU ALA LYS LYS ALA ILE THR SEQRES 3 B 422 ALA ILE PHE ASP GLN LEU LEU GLU PHE VAL THR GLU GLY SEQRES 4 B 422 SER HIS PHE VAL GLU ALA THR TYR LYS ASN PRO GLU LEU SEQRES 5 B 422 ASP ARG ILE ALA THR GLU ASP ASP LEU VAL GLU MET GLN SEQRES 6 B 422 GLY TYR LYS ASP LYS LEU SER ILE ILE GLY GLU VAL LEU SEQRES 7 B 422 SER ARG ARG HIS MET LYS VAL ALA PHE PHE GLY ARG THR SEQRES 8 B 422 SER SER GLY LYS SER SER VAL ILE ASN ALA MET LEU TRP SEQRES 9 B 422 ASP LYS VAL LEU PRO SER GLY ILE GLY HIS ILE THR ASN SEQRES 10 B 422 CYS PHE LEU SER VAL GLU GLY THR ASP GLY ASP LYS ALA SEQRES 11 B 422 TYR LEU MET THR GLU GLY SER ASP GLU LYS LYS SER VAL SEQRES 12 B 422 LYS THR VAL ASN GLN LEU ALA HIS ALA LEU HIS MET ASP SEQRES 13 B 422 LYS ASP LEU LYS ALA GLY CYS LEU VAL ARG VAL PHE TRP SEQRES 14 B 422 PRO LYS ALA LYS CYS ALA LEU LEU ARG ASP ASP LEU VAL SEQRES 15 B 422 LEU VAL ASP SER PRO GLY THR ASP VAL THR THR GLU LEU SEQRES 16 B 422 ASP SER TRP ILE ASP LYS PHE CYS LEU ASP ALA ASP VAL SEQRES 17 B 422 PHE VAL LEU VAL ALA ASN SER GLU SER THR LEU MET ASN SEQRES 18 B 422 THR GLU LYS HIS PHE PHE HIS LYS VAL ASN GLU ARG LEU SEQRES 19 B 422 SER LYS PRO ASN ILE PHE ILE LEU ASN ASN ARG TRP ASP SEQRES 20 B 422 ALA SER ALA SER GLU PRO GLU TYR MET GLU ASP VAL ARG SEQRES 21 B 422 ARG GLN HIS MET GLU ARG CYS LEU HIS PHE LEU VAL GLU SEQRES 22 B 422 GLU LEU LYS VAL VAL ASN ALA LEU GLU ALA GLN ASN ARG SEQRES 23 B 422 ILE PHE PHE VAL SER ALA LYS GLU VAL LEU SER ALA ARG SEQRES 24 B 422 LYS GLN LYS ALA GLN GLY MET PRO GLU SER GLY VAL ALA SEQRES 25 B 422 LEU ALA GLU GLY PHE HIS ALA ARG LEU GLN GLU PHE GLN SEQRES 26 B 422 ASN PHE GLU GLN ILE PHE GLU GLU CYS ILE SER GLN SER SEQRES 27 B 422 ALA VAL LYS THR LYS PHE GLU GLN HIS THR ILE ARG ALA SEQRES 28 B 422 LYS GLN ILE LEU ALA THR VAL LYS ASN ILE MET ASP SER SEQRES 29 B 422 VAL ASN LEU ALA ALA GLU ASP LYS ARG HIS TYR SER ALA SEQRES 30 B 422 ARG LEU PRO LYS GLU ILE ASP GLN LEU GLU LYS ILE GLN SEQRES 31 B 422 ASN ASN SER LYS LEU LEU ARG ASN LYS ALA VAL GLN LEU SEQRES 32 B 422 GLU ASN GLU LEU GLU ASN PHE THR LYS GLN PHE LEU PRO SEQRES 33 B 422 SER SER ASN GLU GLU SER HET GDP A 901 28 HET DTT A 902 8 HET GDP B 901 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 DTT C4 H10 O2 S2 FORMUL 6 HOH *4(H2 O) HELIX 1 AA1 LEU A 8 ASN A 42 1 35 HELIX 2 AA2 THR A 50 SER A 72 1 23 HELIX 3 AA3 GLY A 87 LEU A 96 1 10 HELIX 4 AA4 THR A 138 ASP A 149 1 12 HELIX 5 AA5 CYS A 167 ASP A 172 1 6 HELIX 6 AA6 GLU A 187 ILE A 192 1 6 HELIX 7 AA7 MET A 213 LEU A 227 1 15 HELIX 8 AA8 TRP A 239 SER A 244 1 6 HELIX 9 AA9 GLU A 245 GLU A 247 5 3 HELIX 10 AB1 TYR A 248 GLU A 267 1 20 HELIX 11 AB2 ASN A 272 GLN A 277 1 6 HELIX 12 AB3 SER A 284 ALA A 296 1 13 HELIX 13 AB4 GLY A 309 SER A 369 1 61 HELIX 14 AB5 LEU A 698 LEU A 734 1 37 HELIX 15 AB6 LEU B 8 ASN B 42 1 35 HELIX 16 AB7 THR B 50 SER B 72 1 23 HELIX 17 AB8 GLY B 87 TRP B 97 1 11 HELIX 18 AB9 GLY B 104 THR B 109 1 6 HELIX 19 AC1 THR B 138 ASP B 149 1 12 HELIX 20 AC2 CYS B 167 ASP B 172 1 6 HELIX 21 AC3 ILE B 192 LEU B 197 1 6 HELIX 22 AC4 MET B 213 ARG B 226 1 14 HELIX 23 AC5 TRP B 239 SER B 244 1 6 HELIX 24 AC6 GLU B 245 GLU B 247 5 3 HELIX 25 AC7 TYR B 248 GLU B 266 1 19 HELIX 26 AC8 GLU B 275 ASN B 278 5 4 HELIX 27 AC9 SER B 284 GLN B 297 1 14 HELIX 28 AD1 GLY B 309 SER B 369 1 61 HELIX 29 AD2 LEU B 698 LEU B 734 1 37 SHEET 1 AA1 9 LYS A 134 SER A 135 0 SHEET 2 AA1 9 TYR A 124 MET A 126 -1 N LEU A 125 O LYS A 134 SHEET 3 AA1 9 LEU A 157 PRO A 163 -1 O PHE A 161 N TYR A 124 SHEET 4 AA1 9 PHE A 112 THR A 118 1 N SER A 114 O VAL A 160 SHEET 5 AA1 9 LEU A 174 ASP A 178 -1 O ASP A 178 N LEU A 113 SHEET 6 AA1 9 MET A 76 PHE A 81 1 N MET A 76 O VAL A 175 SHEET 7 AA1 9 VAL A 201 ASN A 207 1 O VAL A 205 N PHE A 81 SHEET 8 AA1 9 ASN A 231 ASN A 237 1 O PHE A 233 N LEU A 204 SHEET 9 AA1 9 ILE A 280 PHE A 282 1 O PHE A 281 N ILE A 234 SHEET 1 AA2 9 LYS B 134 SER B 135 0 SHEET 2 AA2 9 TYR B 124 MET B 126 -1 N LEU B 125 O LYS B 134 SHEET 3 AA2 9 VAL B 158 PRO B 163 -1 O ARG B 159 N MET B 126 SHEET 4 AA2 9 LEU B 113 THR B 118 1 N GLU B 116 O TRP B 162 SHEET 5 AA2 9 LEU B 174 ASP B 178 -1 O ASP B 178 N LEU B 113 SHEET 6 AA2 9 MET B 76 PHE B 81 1 N MET B 76 O VAL B 175 SHEET 7 AA2 9 VAL B 201 ASN B 207 1 O VAL B 203 N ALA B 79 SHEET 8 AA2 9 ASN B 231 ASN B 237 1 O PHE B 233 N LEU B 204 SHEET 9 AA2 9 ILE B 280 PHE B 282 1 O PHE B 281 N ASN B 236 SITE 1 AC1 15 SER A 85 SER A 86 GLY A 87 LYS A 88 SITE 2 AC1 15 SER A 89 SER A 90 SER A 103 GLY A 104 SITE 3 AC1 15 HIS A 107 ASN A 237 ARG A 238 ASP A 240 SITE 4 AC1 15 SER A 284 ALA A 285 LYS A 286 SITE 1 AC2 14 SER B 85 GLY B 87 LYS B 88 SER B 89 SITE 2 AC2 14 SER B 90 SER B 103 HIS B 107 ASN B 237 SITE 3 AC2 14 ARG B 238 ASP B 240 SER B 284 ALA B 285 SITE 4 AC2 14 LYS B 286 LEU B 306 CRYST1 146.108 45.982 146.180 90.00 92.23 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006844 0.000000 0.000267 0.00000 SCALE2 0.000000 0.021748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006846 0.00000