HEADER CHAPERONE 03-AUG-16 5GPK TITLE CRYSTAL STRUCTURE OF CCP1 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NUCLEOSOME ASSEMBLY PROTEIN C36B7.08C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CCP1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE 972H-; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972H-; SOURCE 6 GENE: SPBC36B7.08C; SOURCE 7 EXPRESSION_SYSTEM: SCHIZOSACCHAROMYCES POMBE EXPRESSION VECTOR SOURCE 8 PARG1B; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 477440 KEYWDS CCP1 DIMER, NUCLEOSOME ASSEMBLY PROTEIN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR F.YIN,F.GAO,Y.CHEN REVDAT 1 30-NOV-16 5GPK 0 JRNL AUTH Q.DONG,F.X.YIN,F.GAO,Y.SHEN,F.ZHANG,Y.LI,H.HE,M.GONZALEZ, JRNL AUTH 2 J.YANG,S.ZHANG,M.SU,Y.H.CHEN,F.LI JRNL TITL CCP1 HOMODIMER MEDIATES CHROMATIN INTEGRITY BY ANTAGONIZING JRNL TITL 2 CENP-A LOADING JRNL REF MOL.CELL V. 64 79 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 27666591 JRNL DOI 10.1016/J.MOLCEL.2016.08.022 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8310 - 4.9414 0.99 2843 153 0.1893 0.2512 REMARK 3 2 4.9414 - 3.9233 1.00 2694 140 0.1497 0.2112 REMARK 3 3 3.9233 - 3.4277 1.00 2656 156 0.1661 0.1736 REMARK 3 4 3.4277 - 3.1145 1.00 2646 137 0.1696 0.2007 REMARK 3 5 3.1145 - 2.8913 1.00 2623 143 0.1781 0.2528 REMARK 3 6 2.8913 - 2.7209 1.00 2634 117 0.1783 0.2292 REMARK 3 7 2.7209 - 2.5847 1.00 2595 147 0.1836 0.2571 REMARK 3 8 2.5847 - 2.4722 1.00 2606 140 0.1825 0.2551 REMARK 3 9 2.4722 - 2.3770 1.00 2592 147 0.1856 0.2540 REMARK 3 10 2.3770 - 2.2950 1.00 2573 129 0.1846 0.2275 REMARK 3 11 2.2950 - 2.2233 1.00 2577 131 0.1894 0.2463 REMARK 3 12 2.2233 - 2.1597 1.00 2568 138 0.1961 0.2272 REMARK 3 13 2.1597 - 2.1029 0.99 2569 121 0.2022 0.2396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3533 REMARK 3 ANGLE : 1.033 4776 REMARK 3 CHIRALITY : 0.060 507 REMARK 3 PLANARITY : 0.006 636 REMARK 3 DIHEDRAL : 19.151 2166 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 21.2849 12.2113 7.6194 REMARK 3 T TENSOR REMARK 3 T11: 0.1501 T22: 0.1658 REMARK 3 T33: 0.1209 T12: -0.0179 REMARK 3 T13: -0.0098 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.1588 L22: 1.1152 REMARK 3 L33: -0.0523 L12: -1.0288 REMARK 3 L13: -0.2763 L23: 0.1710 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: -0.0595 S13: 0.1338 REMARK 3 S21: 0.0171 S22: 0.0423 S23: -0.1270 REMARK 3 S31: -0.0285 S32: 0.0560 S33: -0.0172 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36042 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM C3H2NA2O4, 200MM NH4NO3, 18% PEG REMARK 280 3350, 15% EG, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.38800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.69400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.08200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.38800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 119.08200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.69400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLU A 208 REMARK 465 ASP A 209 REMARK 465 GLU A 210 REMARK 465 SER A 211 REMARK 465 VAL A 212 REMARK 465 ASP A 213 REMARK 465 LEU A 214 REMARK 465 GLU A 215 REMARK 465 GLU A 216 REMARK 465 ASP A 217 REMARK 465 GLU A 218 REMARK 465 GLU A 219 REMARK 465 GLU A 220 REMARK 465 GLU A 221 REMARK 465 ASP A 222 REMARK 465 GLU A 223 REMARK 465 GLU A 224 REMARK 465 ASP A 225 REMARK 465 GLU A 226 REMARK 465 GLU A 227 REMARK 465 GLY A 228 REMARK 465 ASP A 229 REMARK 465 GLU A 230 REMARK 465 GLU A 231 REMARK 465 LYS A 232 REMARK 465 GLN A 233 REMARK 465 GLU A 234 REMARK 465 PRO A 235 REMARK 465 PRO A 236 REMARK 465 SER A 237 REMARK 465 LYS A 238 REMARK 465 LYS A 239 REMARK 465 SER A 240 REMARK 465 LYS A 241 REMARK 465 LYS A 242 REMARK 465 SER A 243 REMARK 465 ASN A 244 REMARK 465 ALA A 245 REMARK 465 ALA A 246 REMARK 465 ALA A 247 REMARK 465 GLU A 248 REMARK 465 ASN A 249 REMARK 465 LEU A 250 REMARK 465 TYR A 251 REMARK 465 PHE A 252 REMARK 465 GLN A 253 REMARK 465 GLY A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 TYR A 258 REMARK 465 LYS A 259 REMARK 465 ASP A 260 REMARK 465 ASP A 261 REMARK 465 ASP A 262 REMARK 465 ASP A 263 REMARK 465 LYS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 GLU B 208 REMARK 465 ASP B 209 REMARK 465 GLU B 210 REMARK 465 SER B 211 REMARK 465 VAL B 212 REMARK 465 ASP B 213 REMARK 465 LEU B 214 REMARK 465 GLU B 215 REMARK 465 GLU B 216 REMARK 465 ASP B 217 REMARK 465 GLU B 218 REMARK 465 GLU B 219 REMARK 465 GLU B 220 REMARK 465 GLU B 221 REMARK 465 ASP B 222 REMARK 465 GLU B 223 REMARK 465 GLU B 224 REMARK 465 ASP B 225 REMARK 465 GLU B 226 REMARK 465 GLU B 227 REMARK 465 GLY B 228 REMARK 465 ASP B 229 REMARK 465 GLU B 230 REMARK 465 GLU B 231 REMARK 465 LYS B 232 REMARK 465 GLN B 233 REMARK 465 GLU B 234 REMARK 465 PRO B 235 REMARK 465 PRO B 236 REMARK 465 SER B 237 REMARK 465 LYS B 238 REMARK 465 LYS B 239 REMARK 465 SER B 240 REMARK 465 LYS B 241 REMARK 465 LYS B 242 REMARK 465 SER B 243 REMARK 465 ASN B 244 REMARK 465 ALA B 245 REMARK 465 ALA B 246 REMARK 465 ALA B 247 REMARK 465 GLU B 248 REMARK 465 ASN B 249 REMARK 465 LEU B 250 REMARK 465 TYR B 251 REMARK 465 PHE B 252 REMARK 465 GLN B 253 REMARK 465 GLY B 254 REMARK 465 LEU B 255 REMARK 465 GLU B 256 REMARK 465 ASP B 257 REMARK 465 TYR B 258 REMARK 465 LYS B 259 REMARK 465 ASP B 260 REMARK 465 ASP B 261 REMARK 465 ASP B 262 REMARK 465 ASP B 263 REMARK 465 LYS B 264 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 412 O HOH B 453 2.04 REMARK 500 OE2 GLU B 171 O HOH B 301 2.09 REMARK 500 O HOH B 305 O HOH B 453 2.12 REMARK 500 OE1 GLU B 114 O HOH B 302 2.13 REMARK 500 O HOH B 397 O HOH B 473 2.13 REMARK 500 O HOH B 463 O HOH B 473 2.15 REMARK 500 O HOH A 358 O HOH B 338 2.15 REMARK 500 O HOH B 310 O HOH B 402 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 363 O HOH B 380 5655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 171 CD GLU B 171 OE1 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE B 117 CB - CG - SE ANGL. DEV. = -23.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 51.98 -141.81 REMARK 500 ASP A 173 -27.54 -145.82 REMARK 500 ASN B 108 53.06 -142.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 471 DISTANCE = 5.85 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GPL RELATED DB: PDB DBREF 5GPK A 1 244 UNP Q9HGN2 YO48_SCHPO 1 244 DBREF 5GPK B 1 244 UNP Q9HGN2 YO48_SCHPO 1 244 SEQADV 5GPK MSE A 117 UNP Q9HGN2 ILE 117 ENGINEERED MUTATION SEQADV 5GPK MSE A 150 UNP Q9HGN2 LEU 150 ENGINEERED MUTATION SEQADV 5GPK ALA A 245 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ALA A 246 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ALA A 247 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK GLU A 248 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASN A 249 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK LEU A 250 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK TYR A 251 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK PHE A 252 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK GLN A 253 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK GLY A 254 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK LEU A 255 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK GLU A 256 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASP A 257 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK TYR A 258 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK LYS A 259 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASP A 260 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASP A 261 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASP A 262 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASP A 263 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK LYS A 264 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS A 265 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS A 266 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS A 267 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS A 268 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS A 269 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS A 270 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS A 271 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS A 272 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS A 273 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS A 274 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK MSE B 117 UNP Q9HGN2 ILE 117 ENGINEERED MUTATION SEQADV 5GPK MSE B 150 UNP Q9HGN2 LEU 150 ENGINEERED MUTATION SEQADV 5GPK ALA B 245 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ALA B 246 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ALA B 247 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK GLU B 248 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASN B 249 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK LEU B 250 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK TYR B 251 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK PHE B 252 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK GLN B 253 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK GLY B 254 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK LEU B 255 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK GLU B 256 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASP B 257 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK TYR B 258 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK LYS B 259 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASP B 260 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASP B 261 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASP B 262 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK ASP B 263 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK LYS B 264 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS B 265 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS B 266 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS B 267 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS B 268 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS B 269 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS B 270 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS B 271 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS B 272 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS B 273 UNP Q9HGN2 EXPRESSION TAG SEQADV 5GPK HIS B 274 UNP Q9HGN2 EXPRESSION TAG SEQRES 1 A 274 MSE GLU ALA ALA GLN ALA PHE GLU ASN LEU ALA ASN LEU SEQRES 2 A 274 GLU GLN GLU PHE GLY LYS ALA GLU ILE GLU ILE LEU LYS SEQRES 3 A 274 LYS GLN ASN GLU LEU PHE GLN PRO LEU PHE GLU GLN ARG SEQRES 4 A 274 ARG ASP ILE LEU LYS THR ILE ASN ASN PHE TRP VAL VAL SEQRES 5 A 274 VAL LEU GLU ALA ALA GLY ASP GLU ILE SER GLN TYR ILE SEQRES 6 A 274 THR PRO GLU ASP SER VAL LEU LEU GLU LYS LEU GLU ASN SEQRES 7 A 274 ILE TYR VAL GLU ARG PHE ASN GLU LYS GLU PRO ARG ASP SEQRES 8 A 274 VAL ARG ILE SER LEU THR PHE GLN PRO ASN GLU TYR LEU SEQRES 9 A 274 GLN ASP ASP ASN LEU THR LEU VAL LYS GLU VAL ARG MSE SEQRES 10 A 274 LYS GLU GLU LYS ALA LYS ASP ASP GLU GLY LEU GLU LYS SEQRES 11 A 274 LYS ILE THR LYS TYR THR SER GLN PRO VAL ASP ILE HIS SEQRES 12 A 274 TRP LYS PRO GLY LYS SER MSE PHE ARG LYS ASN LYS LYS SEQRES 13 A 274 LEU PRO PRO ASN PHE PHE ASP TYR PHE GLN TRP THR GLY SEQRES 14 A 274 GLU GLU GLU ASP ASP ASP PHE ASP GLY ALA THR LEU THR SEQRES 15 A 274 ILE PHE LEU ALA GLU ASP LEU PHE PRO ASN ALA VAL LYS SEQRES 16 A 274 TYR PHE THR GLU ALA MSE THR GLU GLU ALA SER ASP GLU SEQRES 17 A 274 ASP GLU SER VAL ASP LEU GLU GLU ASP GLU GLU GLU GLU SEQRES 18 A 274 ASP GLU GLU ASP GLU GLU GLY ASP GLU GLU LYS GLN GLU SEQRES 19 A 274 PRO PRO SER LYS LYS SER LYS LYS SER ASN ALA ALA ALA SEQRES 20 A 274 GLU ASN LEU TYR PHE GLN GLY LEU GLU ASP TYR LYS ASP SEQRES 21 A 274 ASP ASP ASP LYS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 22 A 274 HIS SEQRES 1 B 274 MSE GLU ALA ALA GLN ALA PHE GLU ASN LEU ALA ASN LEU SEQRES 2 B 274 GLU GLN GLU PHE GLY LYS ALA GLU ILE GLU ILE LEU LYS SEQRES 3 B 274 LYS GLN ASN GLU LEU PHE GLN PRO LEU PHE GLU GLN ARG SEQRES 4 B 274 ARG ASP ILE LEU LYS THR ILE ASN ASN PHE TRP VAL VAL SEQRES 5 B 274 VAL LEU GLU ALA ALA GLY ASP GLU ILE SER GLN TYR ILE SEQRES 6 B 274 THR PRO GLU ASP SER VAL LEU LEU GLU LYS LEU GLU ASN SEQRES 7 B 274 ILE TYR VAL GLU ARG PHE ASN GLU LYS GLU PRO ARG ASP SEQRES 8 B 274 VAL ARG ILE SER LEU THR PHE GLN PRO ASN GLU TYR LEU SEQRES 9 B 274 GLN ASP ASP ASN LEU THR LEU VAL LYS GLU VAL ARG MSE SEQRES 10 B 274 LYS GLU GLU LYS ALA LYS ASP ASP GLU GLY LEU GLU LYS SEQRES 11 B 274 LYS ILE THR LYS TYR THR SER GLN PRO VAL ASP ILE HIS SEQRES 12 B 274 TRP LYS PRO GLY LYS SER MSE PHE ARG LYS ASN LYS LYS SEQRES 13 B 274 LEU PRO PRO ASN PHE PHE ASP TYR PHE GLN TRP THR GLY SEQRES 14 B 274 GLU GLU GLU ASP ASP ASP PHE ASP GLY ALA THR LEU THR SEQRES 15 B 274 ILE PHE LEU ALA GLU ASP LEU PHE PRO ASN ALA VAL LYS SEQRES 16 B 274 TYR PHE THR GLU ALA MSE THR GLU GLU ALA SER ASP GLU SEQRES 17 B 274 ASP GLU SER VAL ASP LEU GLU GLU ASP GLU GLU GLU GLU SEQRES 18 B 274 ASP GLU GLU ASP GLU GLU GLY ASP GLU GLU LYS GLN GLU SEQRES 19 B 274 PRO PRO SER LYS LYS SER LYS LYS SER ASN ALA ALA ALA SEQRES 20 B 274 GLU ASN LEU TYR PHE GLN GLY LEU GLU ASP TYR LYS ASP SEQRES 21 B 274 ASP ASP ASP LYS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 22 B 274 HIS MODRES 5GPK MSE A 201 MET MODIFIED RESIDUE MODRES 5GPK MSE B 1 MET MODIFIED RESIDUE MODRES 5GPK MSE B 201 MET MODIFIED RESIDUE HET MSE A 117 8 HET MSE A 150 8 HET MSE A 201 8 HET MSE B 1 8 HET MSE B 117 8 HET MSE B 150 8 HET MSE B 201 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 HOH *353(H2 O) HELIX 1 AA1 GLU A 2 LYS A 44 1 43 HELIX 2 AA2 ASN A 48 ALA A 57 1 10 HELIX 3 AA3 GLY A 58 GLN A 63 1 6 HELIX 4 AA4 THR A 66 GLU A 74 1 9 HELIX 5 AA5 GLN A 105 ASN A 108 5 4 HELIX 6 AA6 ASN A 160 TRP A 167 5 8 HELIX 7 AA7 ASP A 177 ASP A 188 1 12 HELIX 8 AA8 ASN A 192 SER A 206 1 15 HELIX 9 AA9 GLU B 2 LYS B 44 1 43 HELIX 10 AB1 ASN B 48 ALA B 57 1 10 HELIX 11 AB2 GLY B 58 GLN B 63 1 6 HELIX 12 AB3 THR B 66 GLU B 74 1 9 HELIX 13 AB4 GLN B 105 ASN B 108 5 4 HELIX 14 AB5 ASN B 160 TRP B 167 5 8 HELIX 15 AB6 ASP B 177 ASP B 188 1 12 HELIX 16 AB7 ASN B 192 THR B 202 1 11 SHEET 1 AA1 4 LEU A 76 GLU A 82 0 SHEET 2 AA1 4 VAL A 92 PHE A 98 -1 O THR A 97 N GLU A 77 SHEET 3 AA1 4 THR A 110 LYS A 123 -1 O LYS A 113 N ILE A 94 SHEET 4 AA1 4 GLU A 129 THR A 136 -1 O ILE A 132 N GLU A 120 SHEET 1 AA2 4 LEU B 76 GLU B 82 0 SHEET 2 AA2 4 VAL B 92 PHE B 98 -1 O THR B 97 N GLU B 77 SHEET 3 AA2 4 THR B 110 LYS B 123 -1 O LYS B 113 N ILE B 94 SHEET 4 AA2 4 GLU B 129 SER B 137 -1 O ILE B 132 N GLU B 120 LINK C ARG A 116 N MSE A 117 1555 1555 1.32 LINK C MSE A 117 N LYS A 118 1555 1555 1.33 LINK C SER A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N PHE A 151 1555 1555 1.32 LINK C ALA A 200 N MSE A 201 1555 1555 1.33 LINK C MSE A 201 N THR A 202 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.34 LINK C ARG B 116 N MSE B 117 1555 1555 1.32 LINK C MSE B 117 N LYS B 118 1555 1555 1.32 LINK C SER B 149 N MSE B 150 1555 1555 1.33 LINK C MSE B 150 N PHE B 151 1555 1555 1.33 LINK C ALA B 200 N MSE B 201 1555 1555 1.33 LINK C MSE B 201 N THR B 202 1555 1555 1.33 CRYST1 86.814 86.814 158.776 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006298 0.00000