HEADER HYDROLASE 07-AUG-16 5GQE TITLE CRYSTAL STRUCTURE OF MICHAELIS COMPLEX OF XYLANASE MUTANT (T82A, TITLE 2 N127S, AND E128H) FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-XYLANASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES OLIVACEOVIRIDIS; SOURCE 3 ORGANISM_TAXID: 1921; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS XYLOPENTAOSE, ES COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SUZUKI,Z.FUJIMOTO,S.KANEKO,A.KUNO REVDAT 4 08-NOV-23 5GQE 1 HETSYN LINK REVDAT 3 29-JUL-20 5GQE 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 31-JUL-19 5GQE 1 JRNL REVDAT 1 09-AUG-17 5GQE 0 JRNL AUTH R.SUZUKI,Z.FUJIMOTO,S.KANEKO,T.HASEGAWA,A.KUNO JRNL TITL AZIDOLYSIS BY THE FORMATION OF STABLE SER-HIS CATALYTIC DYAD JRNL TITL 2 IN A GLYCOSIDE HYDROLASE FAMILY 10 XYLANASE MUTANT JRNL REF J.APPL.GLYOSCI. V. 65 2019 JRNL REFN ISSN 1344-7882 JRNL DOI 10.5458/JAG.JAG.JAG-2017_011 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.SUZUKI,Z.FUJIMOTO,S.ITO,S.KAWAHARA,S.KANEKO,K.TAIRA, REMARK 1 AUTH 2 T.HASEGAWA,A.KUNO REMARK 1 TITL CRYSTALLOGRAPHIC SNAPSHOTS OF AN ENTIRE REACTION CYCLE FOR A REMARK 1 TITL 2 RETAINING XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86. REMARK 1 REF J. BIOCHEM. V. 146 61 2009 REMARK 1 REFN ISSN 1756-2651 REMARK 1 PMID 19279191 REMARK 1 DOI 10.1093/JB/MVP047 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3308859.820 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 33153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1648 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5193 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 263 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6478 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 195 REMARK 3 SOLVENT ATOMS : 727 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.08000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.680 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 63.95 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR/PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR/WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CARBOSUP.PARAM REMARK 3 PARAMETER FILE 4 : CARBO_REP.PARAM REMARK 3 PARAMETER FILE 5 : CIS_PEPT82AX5.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR/PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR/WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR/DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 5 : CNS_TOPPAR/ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2D1Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% MCILVAINE BUFFER 25% AMMONIUM REMARK 280 SULFATE, PH 5.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.82050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.00350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.82050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.00350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 304 REMARK 465 SER A 305 REMARK 465 THR A 306 REMARK 465 PRO A 307 REMARK 465 PRO A 308 REMARK 465 PRO A 309 REMARK 465 SER A 310 REMARK 465 SER B 804 REMARK 465 SER B 805 REMARK 465 THR B 806 REMARK 465 PRO B 807 REMARK 465 PRO B 808 REMARK 465 PRO B 809 REMARK 465 SER B 810 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 668 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 28.86 -171.44 REMARK 500 ASN A 45 -32.72 -151.75 REMARK 500 LYS A 117 117.21 -39.06 REMARK 500 PRO A 198 75.30 -66.61 REMARK 500 VAL A 268 -68.05 -93.37 REMARK 500 THR A 279 61.57 29.67 REMARK 500 LEU A 281 -168.04 -102.28 REMARK 500 PRO A 327 123.76 -34.11 REMARK 500 ASN A 328 29.01 47.13 REMARK 500 ALA A 369 50.00 -99.92 REMARK 500 TRP A 383 -3.57 -143.52 REMARK 500 VAL A 410 132.57 -36.07 REMARK 500 GLU B 502 5.06 -171.19 REMARK 500 ASN B 545 -18.70 -148.91 REMARK 500 ASP B 662 87.96 -159.93 REMARK 500 VAL B 768 -60.36 -103.56 REMARK 500 THR B 779 57.10 31.46 REMARK 500 VAL B 818 91.62 -61.40 REMARK 500 SER B 820 -10.91 -151.16 REMARK 500 PRO B 827 118.13 -36.99 REMARK 500 TRP B 883 -0.61 -143.18 REMARK 500 THR B 914 -2.79 -143.54 REMARK 500 GLN B 931 10.59 -148.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 669 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 929 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 930 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 931 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 932 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 933 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A 934 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 935 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A 936 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A 937 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A 938 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH A 939 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH A 940 DISTANCE = 8.10 ANGSTROMS REMARK 525 HOH A 941 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH A 942 DISTANCE = 8.90 ANGSTROMS REMARK 525 HOH B1453 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B1454 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B1455 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B1456 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B1457 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B1458 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B1459 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B1460 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH B1461 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B1462 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B1463 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH B1464 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B1465 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B1466 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B1467 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B1468 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B1469 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B1470 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH B1471 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B1472 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH B1473 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH B1474 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH B1475 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH B1476 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH B1477 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH B1478 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH B1479 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH B1480 DISTANCE = 8.16 ANGSTROMS REMARK 525 HOH B1481 DISTANCE = 8.20 ANGSTROMS REMARK 525 HOH B1482 DISTANCE = 8.72 ANGSTROMS REMARK 525 HOH B1483 DISTANCE = 8.78 ANGSTROMS REMARK 525 HOH B1484 DISTANCE = 8.91 ANGSTROMS REMARK 525 HOH B1485 DISTANCE = 9.23 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GQD RELATED DB: PDB DBREF 5GQE A 1 436 UNP Q7SI98 Q7SI98_STROI 1 436 DBREF 5GQE B 501 936 UNP Q7SI98 Q7SI98_STROI 1 436 SEQADV 5GQE ALA A 82 UNP Q7SI98 THR 82 ENGINEERED MUTATION SEQADV 5GQE SER A 127 UNP Q7SI98 ASN 127 ENGINEERED MUTATION SEQADV 5GQE HIS A 128 UNP Q7SI98 GLU 128 ENGINEERED MUTATION SEQADV 5GQE ALA B 582 UNP Q7SI98 THR 82 ENGINEERED MUTATION SEQADV 5GQE SER B 627 UNP Q7SI98 ASN 127 ENGINEERED MUTATION SEQADV 5GQE HIS B 628 UNP Q7SI98 GLU 128 ENGINEERED MUTATION SEQRES 1 A 436 ALA GLU SER THR LEU GLY ALA ALA ALA ALA GLN SER GLY SEQRES 2 A 436 ARG TYR PHE GLY THR ALA ILE ALA SER GLY LYS LEU GLY SEQRES 3 A 436 ASP SER ALA TYR THR THR ILE ALA SER ARG GLU PHE ASN SEQRES 4 A 436 MET VAL THR ALA GLU ASN GLU MET LYS ILE ASP ALA THR SEQRES 5 A 436 GLU PRO GLN ARG GLY GLN PHE ASN PHE SER ALA GLY ASP SEQRES 6 A 436 ARG VAL TYR ASN TRP ALA VAL GLN ASN GLY LYS GLN VAL SEQRES 7 A 436 ARG GLY HIS ALA LEU ALA TRP HIS SER GLN GLN PRO GLY SEQRES 8 A 436 TRP MET GLN SER LEU SER GLY SER THR LEU ARG GLN ALA SEQRES 9 A 436 MET ILE ASP HIS ILE ASN GLY VAL MET GLY HIS TYR LYS SEQRES 10 A 436 GLY LYS ILE ALA GLN TRP ASP VAL VAL SER HIS ALA PHE SEQRES 11 A 436 SER ASP ASP GLY SER GLY GLY ARG ARG ASP SER ASN LEU SEQRES 12 A 436 GLN ARG THR GLY ASN ASP TRP ILE GLU VAL ALA PHE ARG SEQRES 13 A 436 THR ALA ARG ALA ALA ASP PRO ALA ALA LYS LEU CYS TYR SEQRES 14 A 436 ASN ASP TYR ASN ILE GLU ASN TRP THR TRP ALA LYS THR SEQRES 15 A 436 GLN GLY VAL TYR ASN MET VAL ARG ASP PHE LYS GLN ARG SEQRES 16 A 436 GLY VAL PRO ILE ASP CYS VAL GLY PHE GLN SER HIS PHE SEQRES 17 A 436 ASN SER GLY SER PRO TYR ASN SER ASN PHE ARG THR THR SEQRES 18 A 436 LEU GLN ASN PHE ALA ALA LEU GLY VAL ASP VAL ALA ILE SEQRES 19 A 436 THR GLU LEU ASP ILE GLN GLY ALA SER SER SER THR TYR SEQRES 20 A 436 ALA ALA VAL THR ASN ASP CYS LEU ALA VAL SER ARG CYS SEQRES 21 A 436 LEU GLY ILE THR VAL TRP GLY VAL ARG ASP THR ASP SER SEQRES 22 A 436 TRP ARG SER GLY ASP THR PRO LEU LEU PHE ASN GLY ASP SEQRES 23 A 436 GLY SER LYS LYS ALA ALA TYR THR ALA VAL LEU ASN ALA SEQRES 24 A 436 LEU ASN GLY GLY SER SER THR PRO PRO PRO SER GLY GLY SEQRES 25 A 436 GLY GLN ILE LYS GLY VAL GLY SER GLY ARG CYS LEU ASP SEQRES 26 A 436 VAL PRO ASN ALA SER THR THR ASP GLY THR GLN VAL GLN SEQRES 27 A 436 LEU TYR ASP CYS HIS SER ALA THR ASN GLN GLN TRP THR SEQRES 28 A 436 TYR THR ASP ALA GLY GLU LEU ARG VAL TYR GLY ASP LYS SEQRES 29 A 436 CYS LEU ASP ALA ALA GLY THR GLY ASN GLY THR LYS VAL SEQRES 30 A 436 GLN ILE TYR SER CYS TRP GLY GLY ASP ASN GLN LYS TRP SEQRES 31 A 436 ARG LEU ASN SER ASP GLY SER ILE VAL GLY VAL GLN SER SEQRES 32 A 436 GLY LEU CYS LEU ASP ALA VAL GLY GLY GLY THR ALA ASN SEQRES 33 A 436 GLY THR LEU ILE GLN LEU TYR SER CYS SER ASN GLY SER SEQRES 34 A 436 ASN GLN ARG TRP THR ARG THR SEQRES 1 B 436 ALA GLU SER THR LEU GLY ALA ALA ALA ALA GLN SER GLY SEQRES 2 B 436 ARG TYR PHE GLY THR ALA ILE ALA SER GLY LYS LEU GLY SEQRES 3 B 436 ASP SER ALA TYR THR THR ILE ALA SER ARG GLU PHE ASN SEQRES 4 B 436 MET VAL THR ALA GLU ASN GLU MET LYS ILE ASP ALA THR SEQRES 5 B 436 GLU PRO GLN ARG GLY GLN PHE ASN PHE SER ALA GLY ASP SEQRES 6 B 436 ARG VAL TYR ASN TRP ALA VAL GLN ASN GLY LYS GLN VAL SEQRES 7 B 436 ARG GLY HIS ALA LEU ALA TRP HIS SER GLN GLN PRO GLY SEQRES 8 B 436 TRP MET GLN SER LEU SER GLY SER THR LEU ARG GLN ALA SEQRES 9 B 436 MET ILE ASP HIS ILE ASN GLY VAL MET GLY HIS TYR LYS SEQRES 10 B 436 GLY LYS ILE ALA GLN TRP ASP VAL VAL SER HIS ALA PHE SEQRES 11 B 436 SER ASP ASP GLY SER GLY GLY ARG ARG ASP SER ASN LEU SEQRES 12 B 436 GLN ARG THR GLY ASN ASP TRP ILE GLU VAL ALA PHE ARG SEQRES 13 B 436 THR ALA ARG ALA ALA ASP PRO ALA ALA LYS LEU CYS TYR SEQRES 14 B 436 ASN ASP TYR ASN ILE GLU ASN TRP THR TRP ALA LYS THR SEQRES 15 B 436 GLN GLY VAL TYR ASN MET VAL ARG ASP PHE LYS GLN ARG SEQRES 16 B 436 GLY VAL PRO ILE ASP CYS VAL GLY PHE GLN SER HIS PHE SEQRES 17 B 436 ASN SER GLY SER PRO TYR ASN SER ASN PHE ARG THR THR SEQRES 18 B 436 LEU GLN ASN PHE ALA ALA LEU GLY VAL ASP VAL ALA ILE SEQRES 19 B 436 THR GLU LEU ASP ILE GLN GLY ALA SER SER SER THR TYR SEQRES 20 B 436 ALA ALA VAL THR ASN ASP CYS LEU ALA VAL SER ARG CYS SEQRES 21 B 436 LEU GLY ILE THR VAL TRP GLY VAL ARG ASP THR ASP SER SEQRES 22 B 436 TRP ARG SER GLY ASP THR PRO LEU LEU PHE ASN GLY ASP SEQRES 23 B 436 GLY SER LYS LYS ALA ALA TYR THR ALA VAL LEU ASN ALA SEQRES 24 B 436 LEU ASN GLY GLY SER SER THR PRO PRO PRO SER GLY GLY SEQRES 25 B 436 GLY GLN ILE LYS GLY VAL GLY SER GLY ARG CYS LEU ASP SEQRES 26 B 436 VAL PRO ASN ALA SER THR THR ASP GLY THR GLN VAL GLN SEQRES 27 B 436 LEU TYR ASP CYS HIS SER ALA THR ASN GLN GLN TRP THR SEQRES 28 B 436 TYR THR ASP ALA GLY GLU LEU ARG VAL TYR GLY ASP LYS SEQRES 29 B 436 CYS LEU ASP ALA ALA GLY THR GLY ASN GLY THR LYS VAL SEQRES 30 B 436 GLN ILE TYR SER CYS TRP GLY GLY ASP ASN GLN LYS TRP SEQRES 31 B 436 ARG LEU ASN SER ASP GLY SER ILE VAL GLY VAL GLN SER SEQRES 32 B 436 GLY LEU CYS LEU ASP ALA VAL GLY GLY GLY THR ALA ASN SEQRES 33 B 436 GLY THR LEU ILE GLN LEU TYR SER CYS SER ASN GLY SER SEQRES 34 B 436 ASN GLN ARG TRP THR ARG THR HET XYP C 1 10 HET XYP C 2 9 HET XYP C 3 9 HET XYP C 4 9 HET XYP C 5 9 HET XYP D 1 10 HET XYP D 2 9 HET XYP D 3 9 HET XYP D 4 9 HET XYP E 1 10 HET XYP E 2 9 HET XYP F 1 10 HET XYP F 2 9 HET XYP F 3 9 HET XYP F 4 9 HET XYP F 5 9 HET XYP G 1 10 HET XYP G 2 9 HET XYP H 1 10 HET XYP H 2 9 HET XYP H 3 9 HETNAM XYP BETA-D-XYLOPYRANOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 3 XYP 21(C5 H10 O5) FORMUL 9 HOH *727(H2 O) HELIX 1 AA1 THR A 4 GLN A 11 1 8 HELIX 2 AA2 ALA A 21 LEU A 25 5 5 HELIX 3 AA3 ASP A 27 PHE A 38 1 12 HELIX 4 AA4 LYS A 48 GLU A 53 1 6 HELIX 5 AA5 PHE A 61 ASN A 74 1 14 HELIX 6 AA6 PRO A 90 LEU A 96 1 7 HELIX 7 AA7 SER A 97 LYS A 117 1 21 HELIX 8 AA8 LEU A 143 ASN A 148 5 6 HELIX 9 AA9 ASP A 149 ASP A 162 1 14 HELIX 10 AB1 TRP A 179 GLY A 196 1 18 HELIX 11 AB2 SER A 216 LEU A 228 1 13 HELIX 12 AB3 SER A 243 ALA A 256 1 14 HELIX 13 AB4 ARG A 269 SER A 273 5 5 HELIX 14 AB5 ARG A 275 THR A 279 5 5 HELIX 15 AB6 LYS A 290 ASN A 301 1 12 HELIX 16 AB7 VAL A 326 SER A 330 5 5 HELIX 17 AB8 ALA A 345 GLN A 349 5 5 HELIX 18 AB9 GLY A 385 GLN A 388 5 4 HELIX 19 AC1 GLY A 411 GLY A 413 5 3 HELIX 20 AC2 THR B 504 GLN B 511 1 8 HELIX 21 AC3 ALA B 521 LEU B 525 5 5 HELIX 22 AC4 ASP B 527 PHE B 538 1 12 HELIX 23 AC5 LYS B 548 GLU B 553 1 6 HELIX 24 AC6 PHE B 561 ASN B 574 1 14 HELIX 25 AC7 PRO B 590 SER B 595 1 6 HELIX 26 AC8 SER B 597 LYS B 617 1 21 HELIX 27 AC9 LEU B 643 ASN B 648 5 6 HELIX 28 AD1 ASP B 649 ASP B 662 1 14 HELIX 29 AD2 TRP B 679 GLY B 696 1 18 HELIX 30 AD3 ASN B 717 ALA B 727 1 11 HELIX 31 AD4 SER B 743 ALA B 756 1 14 HELIX 32 AD5 ARG B 769 SER B 773 5 5 HELIX 33 AD6 ARG B 775 THR B 779 5 5 HELIX 34 AD7 LYS B 790 GLY B 802 1 13 HELIX 35 AD8 VAL B 826 SER B 830 5 5 HELIX 36 AD9 ALA B 845 GLN B 849 5 5 HELIX 37 AE1 GLY B 885 GLN B 888 5 4 HELIX 38 AE2 GLY B 911 GLY B 913 5 3 HELIX 39 AE3 GLY B 928 ARG B 932 5 5 SHEET 1 AA110 HIS A 207 PHE A 208 0 SHEET 2 AA110 ASP A 231 ILE A 239 1 O ASP A 238 N PHE A 208 SHEET 3 AA110 CYS A 260 VAL A 265 1 O LEU A 261 N VAL A 232 SHEET 4 AA110 TYR A 15 ILE A 20 1 N GLY A 17 O ILE A 263 SHEET 5 AA110 MET A 40 ALA A 43 1 O THR A 42 N ILE A 20 SHEET 6 AA110 GLN A 77 GLY A 80 1 O ARG A 79 N VAL A 41 SHEET 7 AA110 GLN A 122 SER A 127 1 O GLN A 122 N GLY A 80 SHEET 8 AA110 LYS A 166 ASP A 171 1 O CYS A 168 N TRP A 123 SHEET 9 AA110 CYS A 201 PHE A 204 1 O GLY A 203 N TYR A 169 SHEET 10 AA110 ASP A 231 ILE A 239 1 O ALA A 233 N PHE A 204 SHEET 1 AA2 2 ILE A 315 GLY A 317 0 SHEET 2 AA2 2 TRP A 433 ARG A 435 -1 O THR A 434 N LYS A 316 SHEET 1 AA3 2 CYS A 323 ASP A 325 0 SHEET 2 AA3 2 GLN A 338 TYR A 340 -1 O GLN A 338 N ASP A 325 SHEET 1 AA4 4 THR A 351 TYR A 352 0 SHEET 2 AA4 4 LEU A 358 VAL A 360 -1 O ARG A 359 N THR A 351 SHEET 3 AA4 4 LYS A 364 ALA A 368 -1 O LYS A 364 N VAL A 360 SHEET 4 AA4 4 VAL A 377 SER A 381 -1 O GLN A 378 N ASP A 367 SHEET 1 AA5 2 TRP A 390 LEU A 392 0 SHEET 2 AA5 2 ILE A 398 GLY A 400 -1 O VAL A 399 N ARG A 391 SHEET 1 AA6 2 CYS A 406 ALA A 409 0 SHEET 2 AA6 2 ILE A 420 TYR A 423 -1 O GLN A 421 N ASP A 408 SHEET 1 AA710 HIS B 707 PHE B 708 0 SHEET 2 AA710 ASP B 731 ILE B 739 1 O ASP B 738 N PHE B 708 SHEET 3 AA710 CYS B 760 VAL B 765 1 O THR B 764 N LEU B 737 SHEET 4 AA710 TYR B 515 ILE B 520 1 N GLY B 517 O ILE B 763 SHEET 5 AA710 MET B 540 ALA B 543 1 O THR B 542 N ILE B 520 SHEET 6 AA710 GLN B 577 GLY B 580 1 O GLN B 577 N VAL B 541 SHEET 7 AA710 GLN B 622 SER B 627 1 O GLN B 622 N GLY B 580 SHEET 8 AA710 LYS B 666 ASP B 671 1 O CYS B 668 N TRP B 623 SHEET 9 AA710 CYS B 701 PHE B 704 1 O GLY B 703 N TYR B 669 SHEET 10 AA710 ASP B 731 ILE B 739 1 O ALA B 733 N PHE B 704 SHEET 1 AA8 2 ILE B 815 LYS B 816 0 SHEET 2 AA8 2 THR B 934 ARG B 935 -1 O THR B 934 N LYS B 816 SHEET 1 AA9 7 CYS B 823 ASP B 825 0 SHEET 2 AA9 7 GLN B 838 TYR B 840 -1 O GLN B 838 N ASP B 825 SHEET 3 AA9 7 THR B 918 TYR B 923 -1 O THR B 918 N LEU B 839 SHEET 4 AA9 7 THR B 875 SER B 881 -1 N VAL B 877 O ILE B 920 SHEET 5 AA9 7 LYS B 864 ALA B 868 -1 N ASP B 867 O GLN B 878 SHEET 6 AA9 7 LEU B 858 VAL B 860 -1 N VAL B 860 O LYS B 864 SHEET 7 AA9 7 THR B 851 TYR B 852 -1 N THR B 851 O ARG B 859 SHEET 1 AB1 4 THR B 835 GLN B 836 0 SHEET 2 AB1 4 THR B 875 SER B 881 -1 O ILE B 879 N THR B 835 SHEET 3 AB1 4 THR B 918 TYR B 923 -1 O ILE B 920 N VAL B 877 SHEET 4 AB1 4 CYS B 906 ALA B 909 -1 N ASP B 908 O GLN B 921 SHEET 1 AB2 2 TRP B 890 LEU B 892 0 SHEET 2 AB2 2 ILE B 898 GLY B 900 -1 O VAL B 899 N ARG B 891 SSBOND 1 CYS A 168 CYS A 201 1555 1555 2.03 SSBOND 2 CYS A 254 CYS A 260 1555 1555 2.03 SSBOND 3 CYS A 323 CYS A 342 1555 1555 2.03 SSBOND 4 CYS A 365 CYS A 382 1555 1555 2.04 SSBOND 5 CYS A 406 CYS A 425 1555 1555 2.04 SSBOND 6 CYS B 668 CYS B 701 1555 1555 2.04 SSBOND 7 CYS B 754 CYS B 760 1555 1555 2.03 SSBOND 8 CYS B 823 CYS B 842 1555 1555 2.03 SSBOND 9 CYS B 865 CYS B 882 1555 1555 2.03 SSBOND 10 CYS B 906 CYS B 925 1555 1555 2.03 LINK O4 XYP C 1 C1 XYP C 2 1555 1555 1.38 LINK O4 XYP C 2 C1 XYP C 3 1555 1555 1.39 LINK O4 XYP C 3 C1 XYP C 4 1555 1555 1.38 LINK O4 XYP C 4 C1 XYP C 5 1555 1555 1.39 LINK O4 XYP D 1 C1 XYP D 2 1555 1555 1.39 LINK O4 XYP D 2 C1 XYP D 3 1555 1555 1.39 LINK O4 XYP D 3 C1 XYP D 4 1555 1555 1.39 LINK O4 XYP E 1 C1 XYP E 2 1555 1555 1.40 LINK O4 XYP F 1 C1 XYP F 2 1555 1555 1.38 LINK O4 XYP F 2 C1 XYP F 3 1555 1555 1.39 LINK O4 XYP F 3 C1 XYP F 4 1555 1555 1.38 LINK O4 XYP F 4 C1 XYP F 5 1555 1555 1.39 LINK O4 XYP G 1 C1 XYP G 2 1555 1555 1.39 LINK O4 XYP H 1 C1 XYP H 2 1555 1555 1.39 LINK O4 XYP H 2 C1 XYP H 3 1555 1555 1.39 CISPEP 1 HIS A 81 ALA A 82 0 -0.72 CISPEP 2 HIS B 581 ALA B 582 0 -1.04 CRYST1 75.130 94.007 137.641 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007265 0.00000