HEADER TRANSFERASE 08-AUG-16 5GQR TITLE CRYSTAL STRUCTURE OF PXY-CLE41-SERK2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 32-629; COMPND 5 SYNONYM: PROTEIN PHLOEM INTERCALATED WITH XYLEM; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TDIF; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: SOMATIC EMBRYOGENESIS RECEPTOR KINASE 2; COMPND 14 CHAIN: K; COMPND 15 FRAGMENT: UNP RESIDUES 30-214; COMPND 16 SYNONYM: SERK2; COMPND 17 EC: 2.7.11.1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: TDR; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: ARABIDEAE; SOURCE 12 ORGANISM_TAXID: 981070; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 15 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 16 ORGANISM_TAXID: 3702; SOURCE 17 GENE: SERK2; SOURCE 18 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 19 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS MERISTEM CELL PROLIFERATION, SERK, CLE PEPTIDES, LEUCINE RICH REPEAT, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.CHAI,H.Q.ZHANG REVDAT 4 08-NOV-23 5GQR 1 HETSYN REVDAT 3 29-JUL-20 5GQR 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 27-SEP-17 5GQR 1 REMARK REVDAT 1 14-DEC-16 5GQR 0 JRNL AUTH H.Q.ZHANG,X.Y.LIN,Z.F.HAN,J.WANG,L.J.QU,J.J.CHAI JRNL TITL SERK FAMILY RECEPTOR-LIKE KINASES FUNCTION AS CO-RECEPTORS JRNL TITL 2 WITH PXY FOR PLANT VASCULAR DEVELOPMENT JRNL REF MOL PLANT V. 9 1406 2016 JRNL REFN ESSN 1752-9867 JRNL PMID 27449136 JRNL DOI 10.1016/J.MOLP.2016.07.004 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 18033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4743 - 6.6870 0.90 2512 112 0.2132 0.2520 REMARK 3 2 6.6870 - 5.3114 0.94 2467 125 0.2356 0.3390 REMARK 3 3 5.3114 - 4.6411 0.95 2428 129 0.1818 0.2222 REMARK 3 4 4.6411 - 4.2173 0.96 2430 148 0.1857 0.2628 REMARK 3 5 4.2173 - 3.9153 0.97 2430 141 0.2072 0.2425 REMARK 3 6 3.9153 - 3.6846 0.97 2440 123 0.2561 0.2933 REMARK 3 7 3.6846 - 3.5002 0.96 2400 148 0.3146 0.3886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6364 REMARK 3 ANGLE : 1.629 8663 REMARK 3 CHIRALITY : 0.124 996 REMARK 3 PLANARITY : 0.008 1118 REMARK 3 DIHEDRAL : 18.305 2311 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 58.0206 -31.8570 14.2508 REMARK 3 T TENSOR REMARK 3 T11: 1.1368 T22: 0.4522 REMARK 3 T33: 0.4786 T12: -0.0167 REMARK 3 T13: -0.0932 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 1.1001 L22: 1.0532 REMARK 3 L33: 0.8501 L12: 0.9227 REMARK 3 L13: 0.7969 L23: 0.6576 REMARK 3 S TENSOR REMARK 3 S11: -0.4574 S12: 0.0110 S13: 0.2322 REMARK 3 S21: -0.5223 S22: 0.2445 S23: 0.1644 REMARK 3 S31: -0.3409 S32: -0.0719 S33: 0.2108 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18060 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14400 REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MN8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M POTASSIUM CHLORIDE, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.82267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.41133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 124.82267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.41133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 124.82267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 62.41133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 124.82267 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 62.41133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 60 REMARK 465 ASN B 61 REMARK 465 GLY B 62 REMARK 465 GLN B 63 REMARK 465 ASN B 64 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN K 27 CG OD1 ND2 REMARK 470 VAL K 55 CG1 CG2 REMARK 470 GLU K 68 CG CD OE1 OE2 REMARK 470 LYS K 93 CG CD CE NZ REMARK 470 VAL K 205 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN K 184 O5 NAG K 301 2.13 REMARK 500 O GLU B 555 OG1 THR B 558 2.14 REMARK 500 O ASP B 460 OG1 THR B 463 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 98 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 81 -2.02 64.73 REMARK 500 ARG B 102 -5.98 67.15 REMARK 500 THR B 129 -16.05 67.29 REMARK 500 SER B 143 -138.09 63.16 REMARK 500 LYS B 153 -31.89 73.94 REMARK 500 LYS B 156 -60.89 -102.26 REMARK 500 SER B 162 70.74 63.17 REMARK 500 TYR B 234 -0.60 77.11 REMARK 500 GLN B 282 67.25 63.31 REMARK 500 SER B 330 68.85 60.87 REMARK 500 THR B 348 -61.76 -127.37 REMARK 500 GLU B 372 -62.03 -106.74 REMARK 500 TRP B 420 -57.72 -131.22 REMARK 500 ASN B 450 66.94 60.15 REMARK 500 ASP B 455 -139.77 58.47 REMARK 500 ASN B 500 37.95 30.73 REMARK 500 LYS B 512 -74.87 -107.35 REMARK 500 ASN K 56 160.37 177.62 REMARK 500 PRO K 57 42.97 -90.16 REMARK 500 HIS K 62 -6.41 65.56 REMARK 500 GLN K 96 -61.13 -108.47 REMARK 500 SER K 102 70.49 56.96 REMARK 500 THR K 106 -168.88 -126.13 REMARK 500 ASN K 174 66.60 60.49 REMARK 500 PHE K 187 -9.78 -58.82 REMARK 500 ASN K 197 71.94 61.74 REMARK 500 LEU K 199 -165.05 -73.17 REMARK 500 THR K 206 -169.76 -126.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 5GQR B 32 629 UNP Q9FII5 TDR_ARATH 32 629 DBREF 5GQR C 93 104 PDB 5GQR 5GQR 93 104 DBREF 5GQR K 27 211 UNP Q9XIC7 SERK2_ARATH 30 214 SEQRES 1 B 598 PHE SER PRO GLN LEU LEU SER LEU LEU SER LEU LYS THR SEQRES 2 B 598 SER LEU SER GLY PRO PRO SER ALA PHE GLN ASP TRP LYS SEQRES 3 B 598 VAL PRO VAL ASN GLY GLN ASN ASP ALA VAL TRP CYS SER SEQRES 4 B 598 TRP SER GLY VAL VAL CYS ASP ASN VAL THR ALA GLN VAL SEQRES 5 B 598 ILE SER LEU ASP LEU SER HIS ARG ASN LEU SER GLY ARG SEQRES 6 B 598 ILE PRO ILE GLN ILE ARG TYR LEU SER SER LEU LEU TYR SEQRES 7 B 598 LEU ASN LEU SER GLY ASN SER LEU GLU GLY SER PHE PRO SEQRES 8 B 598 THR SER ILE PHE ASP LEU THR LYS LEU THR THR LEU ASP SEQRES 9 B 598 ILE SER ARG ASN SER PHE ASP SER SER PHE PRO PRO GLY SEQRES 10 B 598 ILE SER LYS LEU LYS PHE LEU LYS VAL PHE ASN ALA PHE SEQRES 11 B 598 SER ASN ASN PHE GLU GLY LEU LEU PRO SER ASP VAL SER SEQRES 12 B 598 ARG LEU ARG PHE LEU GLU GLU LEU ASN PHE GLY GLY SER SEQRES 13 B 598 TYR PHE GLU GLY GLU ILE PRO ALA ALA TYR GLY GLY LEU SEQRES 14 B 598 GLN ARG LEU LYS PHE ILE HIS LEU ALA GLY ASN VAL LEU SEQRES 15 B 598 GLY GLY LYS LEU PRO PRO ARG LEU GLY LEU LEU THR GLU SEQRES 16 B 598 LEU GLN HIS MET GLU ILE GLY TYR ASN HIS PHE ASN GLY SEQRES 17 B 598 ASN ILE PRO SER GLU PHE ALA LEU LEU SER ASN LEU LYS SEQRES 18 B 598 TYR PHE ASP VAL SER ASN CYS SER LEU SER GLY SER LEU SEQRES 19 B 598 PRO GLN GLU LEU GLY ASN LEU SER ASN LEU GLU THR LEU SEQRES 20 B 598 PHE LEU PHE GLN ASN GLY PHE THR GLY GLU ILE PRO GLU SEQRES 21 B 598 SER TYR SER ASN LEU LYS SER LEU LYS LEU LEU ASP PHE SEQRES 22 B 598 SER SER ASN GLN LEU SER GLY SER ILE PRO SER GLY PHE SEQRES 23 B 598 SER THR LEU LYS ASN LEU THR TRP LEU SER LEU ILE SER SEQRES 24 B 598 ASN ASN LEU SER GLY GLU VAL PRO GLU GLY ILE GLY GLU SEQRES 25 B 598 LEU PRO GLU LEU THR THR LEU PHE LEU TRP ASN ASN ASN SEQRES 26 B 598 PHE THR GLY VAL LEU PRO HIS LYS LEU GLY SER ASN GLY SEQRES 27 B 598 LYS LEU GLU THR MET ASP VAL SER ASN ASN SER PHE THR SEQRES 28 B 598 GLY THR ILE PRO SER SER LEU CYS HIS GLY ASN LYS LEU SEQRES 29 B 598 TYR LYS LEU ILE LEU PHE SER ASN MET PHE GLU GLY GLU SEQRES 30 B 598 LEU PRO LYS SER LEU THR ARG CYS GLU SER LEU TRP ARG SEQRES 31 B 598 PHE ARG SER GLN ASN ASN ARG LEU ASN GLY THR ILE PRO SEQRES 32 B 598 ILE GLY PHE GLY SER LEU ARG ASN LEU THR PHE VAL ASP SEQRES 33 B 598 LEU SER ASN ASN ARG PHE THR ASP GLN ILE PRO ALA ASP SEQRES 34 B 598 PHE ALA THR ALA PRO VAL LEU GLN TYR LEU ASN LEU SER SEQRES 35 B 598 THR ASN PHE PHE HIS ARG LYS LEU PRO GLU ASN ILE TRP SEQRES 36 B 598 LYS ALA PRO ASN LEU GLN ILE PHE SER ALA SER PHE SER SEQRES 37 B 598 ASN LEU ILE GLY GLU ILE PRO ASN TYR VAL GLY CYS LYS SEQRES 38 B 598 SER PHE TYR ARG ILE GLU LEU GLN GLY ASN SER LEU ASN SEQRES 39 B 598 GLY THR ILE PRO TRP ASP ILE GLY HIS CYS GLU LYS LEU SEQRES 40 B 598 LEU CYS LEU ASN LEU SER GLN ASN HIS LEU ASN GLY ILE SEQRES 41 B 598 ILE PRO TRP GLU ILE SER THR LEU PRO SER ILE ALA ASP SEQRES 42 B 598 VAL ASP LEU SER HIS ASN LEU LEU THR GLY THR ILE PRO SEQRES 43 B 598 SER ASP PHE GLY SER SER LYS THR ILE THR THR PHE ASN SEQRES 44 B 598 VAL SER TYR ASN GLN LEU ILE GLY PRO ILE PRO SER GLY SEQRES 45 B 598 SER PHE ALA HIS LEU ASN PRO SER PHE PHE SER SER ASN SEQRES 46 B 598 GLU GLY LEU CYS GLY ASP LEU VAL GLY LYS PRO CYS ASN SEQRES 1 C 12 HIS GLU VAL PRO SER GLY HYP ASN PRO ILE SER ASN SEQRES 1 K 185 ASN MET GLU GLY ASP ALA LEU HIS SER LEU ARG ALA ASN SEQRES 2 K 185 LEU VAL ASP PRO ASN ASN VAL LEU GLN SER TRP ASP PRO SEQRES 3 K 185 THR LEU VAL ASN PRO CYS THR TRP PHE HIS VAL THR CYS SEQRES 4 K 185 ASN ASN GLU ASN SER VAL ILE ARG VAL ASP LEU GLY ASN SEQRES 5 K 185 ALA ASP LEU SER GLY GLN LEU VAL PRO GLN LEU GLY GLN SEQRES 6 K 185 LEU LYS ASN LEU GLN TYR LEU GLU LEU TYR SER ASN ASN SEQRES 7 K 185 ILE THR GLY PRO VAL PRO SER ASP LEU GLY ASN LEU THR SEQRES 8 K 185 ASN LEU VAL SER LEU ASP LEU TYR LEU ASN SER PHE THR SEQRES 9 K 185 GLY PRO ILE PRO ASP SER LEU GLY LYS LEU PHE LYS LEU SEQRES 10 K 185 ARG PHE LEU ARG LEU ASN ASN ASN SER LEU THR GLY PRO SEQRES 11 K 185 ILE PRO MET SER LEU THR ASN ILE MET THR LEU GLN VAL SEQRES 12 K 185 LEU ASP LEU SER ASN ASN ARG LEU SER GLY SER VAL PRO SEQRES 13 K 185 ASP ASN GLY SER PHE SER LEU PHE THR PRO ILE SER PHE SEQRES 14 K 185 ALA ASN ASN LEU ASP LEU CYS GLY PRO VAL THR SER ARG SEQRES 15 K 185 PRO CYS PRO HET HYP C 99 8 HET NAG B 701 14 HET NAG B 702 14 HET NAG K 301 14 HET NAG K 302 14 HETNAM HYP 4-HYDROXYPROLINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN HYP HYDROXYPROLINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 HYP C5 H9 N O3 FORMUL 4 NAG 4(C8 H15 N O6) HELIX 1 AA1 SER B 33 SER B 45 1 13 HELIX 2 AA2 ALA B 66 TRP B 71 5 6 HELIX 3 AA3 THR B 123 LEU B 128 5 6 HELIX 4 AA4 PRO B 146 LEU B 152 5 7 HELIX 5 AA5 SER B 171 LEU B 176 5 6 HELIX 6 AA6 PRO B 194 LEU B 200 5 7 HELIX 7 AA7 PRO B 218 LEU B 224 5 7 HELIX 8 AA8 PRO B 242 LEU B 248 5 7 HELIX 9 AA9 PRO B 266 LEU B 272 5 7 HELIX 10 AB1 PRO B 290 LEU B 296 5 7 HELIX 11 AB2 PRO B 314 LEU B 320 5 7 HELIX 12 AB3 PRO B 338 GLU B 343 5 6 HELIX 13 AB4 PRO B 410 CYS B 416 5 7 HELIX 14 AB5 GLY B 436 LEU B 440 5 5 HELIX 15 AB6 PRO B 458 THR B 463 5 6 HELIX 16 AB7 PRO B 482 ALA B 488 5 7 HELIX 17 AB8 ASP B 531 CYS B 535 5 5 HELIX 18 AB9 PRO B 553 LEU B 559 5 7 HELIX 19 AC1 PRO B 577 SER B 583 5 7 HELIX 20 AC2 GLY B 603 LEU B 608 5 6 HELIX 21 AC3 ASN B 609 PHE B 613 5 5 HELIX 22 AC4 MET K 28 ASN K 39 1 12 HELIX 23 AC5 VAL K 46 TRP K 50 5 5 HELIX 24 AC6 ASN K 56 TRP K 60 5 5 HELIX 25 AC7 VAL K 86 LEU K 92 5 7 HELIX 26 AC8 PRO K 110 LEU K 116 5 7 HELIX 27 AC9 PRO K 134 LEU K 140 5 7 HELIX 28 AD1 PRO K 158 ILE K 164 5 7 HELIX 29 AD2 ASN K 184 PHE K 190 5 7 HELIX 30 AD3 THR K 191 PHE K 195 5 5 SHEET 1 AA1 2 LEU B 46 SER B 47 0 SHEET 2 AA1 2 SER B 94 GLY B 95 -1 O SER B 94 N SER B 47 SHEET 1 AA223 VAL B 74 CYS B 76 0 SHEET 2 AA223 VAL B 83 ASP B 87 -1 O SER B 85 N VAL B 75 SHEET 3 AA223 TYR B 109 ASN B 111 1 O ASN B 111 N LEU B 86 SHEET 4 AA223 THR B 133 ASP B 135 1 O ASP B 135 N LEU B 110 SHEET 5 AA223 VAL B 157 ASN B 159 1 O ASN B 159 N LEU B 134 SHEET 6 AA223 GLU B 181 ASN B 183 1 O GLU B 181 N PHE B 158 SHEET 7 AA223 PHE B 205 HIS B 207 1 O HIS B 207 N LEU B 182 SHEET 8 AA223 HIS B 229 GLU B 231 1 O HIS B 229 N ILE B 206 SHEET 9 AA223 TYR B 253 ASP B 255 1 O TYR B 253 N MET B 230 SHEET 10 AA223 THR B 277 PHE B 279 1 O PHE B 279 N PHE B 254 SHEET 11 AA223 LEU B 301 ASP B 303 1 O ASP B 303 N LEU B 278 SHEET 12 AA223 TRP B 325 SER B 327 1 O SER B 327 N LEU B 302 SHEET 13 AA223 THR B 349 PHE B 351 1 O THR B 349 N LEU B 326 SHEET 14 AA223 THR B 373 ASP B 375 1 O THR B 373 N LEU B 350 SHEET 15 AA223 LYS B 397 ILE B 399 1 O ILE B 399 N MET B 374 SHEET 16 AA223 ARG B 421 ARG B 423 1 O ARG B 421 N LEU B 398 SHEET 17 AA223 PHE B 445 ASP B 447 1 O PHE B 445 N PHE B 422 SHEET 18 AA223 TYR B 469 ASN B 471 1 O TYR B 469 N VAL B 446 SHEET 19 AA223 ILE B 493 SER B 495 1 O SER B 495 N LEU B 470 SHEET 20 AA223 ARG B 516 GLU B 518 1 O ARG B 516 N PHE B 494 SHEET 21 AA223 CYS B 540 ASN B 542 1 O CYS B 540 N ILE B 517 SHEET 22 AA223 ASP B 564 ASP B 566 1 O ASP B 564 N LEU B 541 SHEET 23 AA223 THR B 588 ASN B 590 1 O ASN B 590 N VAL B 565 SHEET 1 AA3 2 ASP B 142 SER B 143 0 SHEET 2 AA3 2 ASN B 164 PHE B 165 1 O ASN B 164 N SER B 143 SHEET 1 AA4 2 GLY B 214 GLY B 215 0 SHEET 2 AA4 2 HIS B 236 PHE B 237 1 O HIS B 236 N GLY B 215 SHEET 1 AA5 2 SER B 262 SER B 264 0 SHEET 2 AA5 2 GLY B 284 THR B 286 1 O THR B 286 N GLY B 263 SHEET 1 AA6 2 THR B 382 GLY B 383 0 SHEET 2 AA6 2 MET B 404 PHE B 405 1 O MET B 404 N GLY B 383 SHEET 1 AA7 2 ASN B 430 GLY B 431 0 SHEET 2 AA7 2 ARG B 452 PHE B 453 1 O ARG B 452 N GLY B 431 SHEET 1 AA8 2 ASN B 525 GLY B 526 0 SHEET 2 AA8 2 HIS B 547 LEU B 548 1 O HIS B 547 N GLY B 526 SHEET 1 AA9 2 ILE B 597 PRO B 599 0 SHEET 2 AA9 2 GLY B 618 CYS B 620 1 O GLY B 618 N GLY B 598 SHEET 1 AB1 2 LEU K 40 VAL K 41 0 SHEET 2 AB1 2 SER K 82 GLY K 83 -1 O SER K 82 N VAL K 41 SHEET 1 AB2 6 VAL K 63 CYS K 65 0 SHEET 2 AB2 6 VAL K 71 ASP K 75 -1 O ILE K 72 N THR K 64 SHEET 3 AB2 6 TYR K 97 GLU K 99 1 N TYR K 97 O ILE K 72 SHEET 4 AB2 6 SER K 121 ASP K 123 1 O SER K 121 N LEU K 98 SHEET 5 AB2 6 PHE K 145 ARG K 147 1 O PHE K 145 N LEU K 122 SHEET 6 AB2 6 VAL K 169 ASP K 171 1 O ASP K 171 N LEU K 146 SHEET 1 AB3 2 THR K 106 GLY K 107 0 SHEET 2 AB3 2 SER K 128 PHE K 129 1 O SER K 128 N GLY K 107 SHEET 1 AB4 2 GLY K 179 SER K 180 0 SHEET 2 AB4 2 LEU K 201 CYS K 202 1 O CYS K 202 N GLY K 179 SSBOND 1 CYS B 69 CYS B 76 1555 1555 2.04 SSBOND 2 CYS B 390 CYS B 416 1555 1555 2.03 SSBOND 3 CYS B 511 CYS B 535 1555 1555 2.04 SSBOND 4 CYS B 620 CYS B 628 1555 1555 2.04 SSBOND 5 CYS K 58 CYS K 65 1555 1555 2.05 SSBOND 6 CYS K 202 CYS K 210 1555 1555 2.04 LINK ND2 ASN B 111 C1 NAG B 702 1555 1555 1.46 LINK ND2 ASN B 322 C1 NAG B 701 1555 1555 1.45 LINK C GLY C 98 N HYP C 99 1555 1555 1.32 LINK C HYP C 99 N ASN C 100 1555 1555 1.34 LINK ND2 ASN K 150 C1 NAG K 302 1555 1555 1.47 LINK ND2 ASN K 184 C1 NAG K 301 1555 1555 1.48 CRYST1 162.422 162.422 187.234 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006157 0.003555 0.000000 0.00000 SCALE2 0.000000 0.007109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005341 0.00000