HEADER HYDROLASE 14-AUG-16 5GS8 TITLE CRYSTAL STRUCTURE OF TLA-3 EXTENDED-SPECTRUM BETA-LACTAMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-309; COMPND 5 SYNONYM: EXTENDED-SPECTRUM BETA-LACTAMASE TLA-3; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS EXTENDED-SPECTRUM BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WACHINO,W.JIN,Y.ARAKAWA REVDAT 3 08-NOV-23 5GS8 1 LINK REVDAT 2 23-JAN-19 5GS8 1 JRNL REVDAT 1 12-JUL-17 5GS8 0 JRNL AUTH W.JIN,J.WACHINO,Y.YAMAGUCHI,K.KIMURA,A.KUMAR,M.YAMADA, JRNL AUTH 2 A.MORINAKA,Y.SAKAMAKI,M.YONEZAWA,H.KUROSAKI,Y.ARAKAWA JRNL TITL STRUCTURAL INSIGHTS INTO THE TLA-3 EXTENDED-SPECTRUM JRNL TITL 2 BETA-LACTAMASE AND ITS INHIBITION BY AVIBACTAM AND OP0595. JRNL REF ANTIMICROB. AGENTS V. 61 2017 JRNL REF 2 CHEMOTHER. JRNL REFN ESSN 1098-6596 JRNL PMID 28739781 JRNL DOI 10.1128/AAC.00501-17 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1903 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2664 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.1970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2320 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2266 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3154 ; 1.506 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5277 ; 0.771 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 6.436 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;32.941 ;26.392 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;13.741 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 5.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2576 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 486 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1127 ; 1.553 ; 1.154 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1126 ; 1.543 ; 1.151 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1414 ; 2.178 ; 1.726 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1415 ; 2.178 ; 1.729 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1193 ; 3.072 ; 1.471 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1174 ; 2.973 ; 1.454 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1697 ; 4.360 ; 2.037 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3106 ; 5.835 ;17.572 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2927 ; 5.663 ;16.241 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AICHISR REMARK 200 BEAMLINE : BL2S1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38203 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 55.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.18100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1E25 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 2.8M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.42500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.42500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -493.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -3.27658 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.94071 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 534 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 638 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 663 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 10 REMARK 465 LYS A 11 REMARK 465 ASP A 287 REMARK 465 GLY A 288 REMARK 465 LYS A 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 106 O HOH A 401 1.92 REMARK 500 NZ LYS A 161 O HOH A 402 1.97 REMARK 500 OD2 ASP A 229 O HOH A 403 2.02 REMARK 500 CG LYS A 30 O HOH A 568 2.11 REMARK 500 OD1 ASP A 229 O HOH A 404 2.11 REMARK 500 OD1 ASP A 267 O HOH A 405 2.13 REMARK 500 O1 SO4 A 305 O HOH A 406 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 640 O HOH A 640 2556 1.84 REMARK 500 NZ LYS A 137 OD2 ASP A 267 1554 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 55 -131.09 38.88 REMARK 500 LEU A 88 78.97 -103.23 REMARK 500 SER A 94 87.03 -167.09 REMARK 500 ASN A 149 37.81 70.75 REMARK 500 ARG A 210 -112.97 -101.23 REMARK 500 ASP A 229 -167.78 -78.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 320 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 37 O REMARK 620 2 ASP A 40 O 67.1 REMARK 620 3 PHE A 42 O 99.5 103.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 314 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 48 O REMARK 620 2 ASP A 174 OD1 81.3 REMARK 620 3 HOH A 651 O 124.5 110.7 REMARK 620 4 HOH A 671 O 111.0 152.7 83.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 317 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 48 OE1 REMARK 620 2 HOH A 593 O 95.8 REMARK 620 3 HOH A 595 O 131.9 101.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 312 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 106 O REMARK 620 2 HOH A 453 O 106.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 319 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 123 OD1 REMARK 620 2 ASP A 126 OD2 137.3 REMARK 620 3 HOH A 582 O 116.7 106.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 147 O REMARK 620 2 ILE A 150 O 148.7 REMARK 620 3 HOH A 536 O 96.6 114.7 REMARK 620 4 HOH A 589 O 114.0 57.2 110.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 159 O REMARK 620 2 ALA A 162 O 69.3 REMARK 620 3 TRP A 163 O 137.3 72.9 REMARK 620 4 HOH A 574 O 79.4 136.7 118.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 172 OG1 REMARK 620 2 ASP A 174 OD2 99.0 REMARK 620 3 HOH A 529 O 108.3 108.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 316 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 202 O REMARK 620 2 THR A 204 O 86.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 204 O REMARK 620 2 THR A 206 O 101.7 REMARK 620 3 HOH A 666 O 75.4 131.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 207 O REMARK 620 2 ASP A 241 OD2 97.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 234 O REMARK 620 2 THR A 236 OG1 111.1 REMARK 620 3 SER A 262 O 70.0 90.8 REMARK 620 4 GLU A 264 O 137.3 107.8 92.9 REMARK 620 5 HOH A 694 O 96.6 101.3 164.7 92.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 313 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 252 O REMARK 620 2 HOH A 409 O 131.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 318 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 261 O REMARK 620 2 SER A 263 OG 120.8 REMARK 620 3 HOH A 672 O 111.4 114.4 REMARK 620 4 HOH A 710 O 103.8 104.8 98.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 315 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 436 O REMARK 620 2 HOH A 524 O 100.7 REMARK 620 3 HOH A 676 O 117.8 141.4 REMARK 620 4 HOH A 700 O 97.0 89.4 83.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 322 DBREF1 5GS8 A 10 289 UNP A0A0B6VPP7_SERMA DBREF2 5GS8 A A0A0B6VPP7 30 309 SEQRES 1 A 280 ALA LYS GLY THR ASP SER LEU LYS ASN SER ILE GLU LYS SEQRES 2 A 280 TYR LEU LYS ASP LYS LYS ALA LYS VAL GLY VAL ALA VAL SEQRES 3 A 280 LEU GLY ILE GLU ASP ASN PHE LYS LEU ASN VAL ASN GLU SEQRES 4 A 280 LYS HIS HIS TYR PRO MET GLN SER THR TYR LYS PHE HIS SEQRES 5 A 280 LEU ALA LEU ALA VAL LEU ASP LYS LEU ASP LYS GLU ASN SEQRES 6 A 280 ILE SER VAL ASP LYS LYS LEU PHE VAL LYS LYS SER ASP SEQRES 7 A 280 LEU GLN PRO ASN THR TRP SER PRO LEU LYS ASP LYS TYR SEQRES 8 A 280 PRO ASN GLY ASN LEU GLU LEU SER PHE SER GLU ILE ILE SEQRES 9 A 280 LYS SER THR VAL SER HIS SER ASP ASN ASN GLY CYS ASP SEQRES 10 A 280 ILE LEU PHE ARG PHE VAL GLY GLY THR ASN LYS VAL HIS SEQRES 11 A 280 ASN PHE ILE SER LYS LEU GLY VAL LYS ASN ILE SER ILE SEQRES 12 A 280 LYS ALA THR GLU GLU GLU MET HIS LYS ALA TRP ASN VAL SEQRES 13 A 280 GLN TYR THR ASN TRP THR THR PRO ASP ALA THR VAL GLN SEQRES 14 A 280 LEU LEU LYS LYS PHE TYR LYS ASN GLU ILE LEU SER LYS SEQRES 15 A 280 ASN SER TYR ASP PHE LEU LEU ASN THR MET ILE GLU THR SEQRES 16 A 280 THR THR GLY PRO LYS ARG LEU LYS GLY LEU LEU PRO ASP SEQRES 17 A 280 GLY THR VAL VAL ALA HIS LYS THR GLY SER SER ASP THR SEQRES 18 A 280 ASN ASN LYS GLY ILE THR ALA ALA THR ASN ASP ILE GLY SEQRES 19 A 280 ILE ILE THR LEU PRO ASN GLY LYS HIS PHE ALA ILE ALA SEQRES 20 A 280 VAL TYR VAL SER ASP SER SER GLU LYS SER ASP VAL ASN SEQRES 21 A 280 GLU LYS ILE ILE ALA GLU ILE CYS LYS SER VAL TRP ASP SEQRES 22 A 280 TYR LEU VAL LYS ASP GLY LYS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET NA A 306 1 HET NA A 307 1 HET NA A 308 1 HET NA A 309 1 HET NA A 310 1 HET NA A 311 1 HET NA A 312 1 HET NA A 313 1 HET NA A 314 1 HET NA A 315 1 HET NA A 316 1 HET NA A 317 1 HET NA A 318 1 HET NA A 319 1 HET NA A 320 1 HET CL A 321 1 HET CL A 322 1 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 NA 15(NA 1+) FORMUL 22 CL 2(CL 1-) FORMUL 24 HOH *330(H2 O) HELIX 1 AA1 GLY A 12 LYS A 25 1 14 HELIX 2 AA2 THR A 57 ASN A 74 1 18 HELIX 3 AA3 LYS A 84 LEU A 88 5 5 HELIX 4 AA4 SER A 94 TYR A 100 1 7 HELIX 5 AA5 PHE A 109 HIS A 119 1 11 HELIX 6 AA6 ASP A 121 GLY A 133 1 13 HELIX 7 AA7 GLY A 134 LEU A 145 1 12 HELIX 8 AA8 THR A 155 ALA A 162 1 8 HELIX 9 AA9 TRP A 163 THR A 168 5 6 HELIX 10 AB1 THR A 172 LYS A 185 1 14 HELIX 11 AB2 SER A 190 GLU A 203 1 14 HELIX 12 AB3 LYS A 265 LYS A 286 1 22 SHEET 1 AA1 5 LYS A 43 VAL A 46 0 SHEET 2 AA1 5 LYS A 30 GLY A 37 -1 N VAL A 35 O LEU A 44 SHEET 3 AA1 5 HIS A 252 SER A 262 -1 O ALA A 254 N LEU A 36 SHEET 4 AA1 5 THR A 236 THR A 246 -1 N ILE A 245 O PHE A 253 SHEET 5 AA1 5 VAL A 221 SER A 227 -1 N GLY A 226 O ASN A 240 SHEET 1 AA2 3 TYR A 52 PRO A 53 0 SHEET 2 AA2 3 TRP A 170 THR A 171 -1 O THR A 171 N TYR A 52 SHEET 3 AA2 3 ILE A 150 SER A 151 -1 N SER A 151 O TRP A 170 SHEET 1 AA3 2 LYS A 80 VAL A 83 0 SHEET 2 AA3 2 LEU A 105 SER A 108 -1 O LEU A 105 N VAL A 83 LINK O GLY A 37 NA NA A 320 1555 1555 3.16 LINK O ASP A 40 NA NA A 320 1555 1555 3.11 LINK O PHE A 42 NA NA A 320 1555 1555 2.98 LINK O GLU A 48 NA NA A 314 1555 1555 2.75 LINK OE1 GLU A 48 NA NA A 317 1555 1555 2.67 LINK O GLU A 106 NA NA A 312 1555 1555 2.77 LINK OD1 ASN A 123 NA NA A 319 1555 1555 3.02 LINK OD2 ASP A 126 NA NA A 319 1555 1555 3.17 LINK O VAL A 147 NA NA A 308 1555 1555 2.77 LINK O ILE A 150 NA NA A 308 1555 1555 3.13 LINK O MET A 159 NA NA A 306 1555 1555 2.82 LINK O ALA A 162 NA NA A 306 1555 1555 2.86 LINK O TRP A 163 NA NA A 306 1555 1555 2.80 LINK OG1 THR A 172 NA NA A 309 1555 1555 2.75 LINK OD2 ASP A 174 NA NA A 309 1555 1555 3.20 LINK OD1 ASP A 174 NA NA A 314 1555 1555 2.70 LINK O ILE A 202 NA NA A 316 1555 1555 2.88 LINK O THR A 204 NA NA A 311 1555 1555 3.11 LINK O THR A 204 NA NA A 316 1555 1555 2.90 LINK O THR A 206 NA NA A 311 1555 1555 2.78 LINK O GLY A 207 NA NA A 307 1555 1555 2.80 LINK O GLY A 234 NA NA A 310 1555 1555 2.96 LINK OG1 THR A 236 NA NA A 310 1555 1555 2.80 LINK OD2 ASP A 241 NA NA A 307 1555 1555 2.76 LINK O HIS A 252 NA NA A 313 1555 1555 2.89 LINK O ASP A 261 NA NA A 318 1555 1555 2.84 LINK O SER A 262 NA NA A 310 1555 1555 2.98 LINK OG SER A 263 NA NA A 318 1555 1555 2.83 LINK O GLU A 264 NA NA A 310 1555 1555 2.80 LINK NA NA A 306 O HOH A 574 1555 1555 2.83 LINK NA NA A 308 O HOH A 536 1555 1555 2.67 LINK NA NA A 308 O HOH A 589 1555 1555 2.90 LINK NA NA A 309 O HOH A 529 1555 1555 2.87 LINK NA NA A 310 O HOH A 694 1555 1555 2.83 LINK NA NA A 311 O HOH A 666 1555 1555 2.87 LINK NA NA A 312 O HOH A 453 1555 1555 2.74 LINK NA NA A 313 O HOH A 409 1555 1555 2.61 LINK NA NA A 314 O HOH A 651 1555 1555 2.79 LINK NA NA A 314 O HOH A 671 1555 1555 2.81 LINK NA NA A 315 O HOH A 436 1555 1555 2.69 LINK NA NA A 315 O HOH A 524 1555 1555 2.90 LINK NA NA A 315 O HOH A 676 1555 1555 2.74 LINK NA NA A 315 O HOH A 700 1555 1555 2.82 LINK NA NA A 317 O HOH A 593 1555 1555 2.76 LINK NA NA A 317 O HOH A 595 1555 4546 2.63 LINK NA NA A 318 O HOH A 672 1555 1555 2.93 LINK NA NA A 318 O HOH A 710 1555 1555 2.68 LINK NA NA A 319 O HOH A 582 1555 1555 2.76 SITE 1 AC1 10 LYS A 30 HIS A 50 HIS A 51 TYR A 184 SITE 2 AC1 10 VAL A 220 THR A 246 HIS A 252 HOH A 421 SITE 3 AC1 10 HOH A 443 HOH A 552 SITE 1 AC2 9 SER A 56 SER A 120 LYS A 224 THR A 225 SITE 2 AC2 9 GLY A 226 SER A 227 HOH A 447 HOH A 557 SITE 3 AC2 9 HOH A 585 SITE 1 AC3 5 ALA A 162 TRP A 163 ASN A 164 HOH A 480 SITE 2 AC3 5 HOH A 526 SITE 1 AC4 7 LYS A 25 SER A 76 VAL A 77 ASN A 192 SITE 2 AC4 7 HOH A 430 HOH A 438 HOH A 512 SITE 1 AC5 5 GLU A 111 LYS A 114 HOH A 406 HOH A 436 SITE 2 AC5 5 HOH A 594 SITE 1 AC6 6 MET A 159 ALA A 162 TRP A 163 VAL A 165 SITE 2 AC6 6 GLN A 166 HOH A 574 SITE 1 AC7 5 GLY A 207 LEU A 211 LYS A 212 HIS A 223 SITE 2 AC7 5 ASP A 241 SITE 1 AC8 6 VAL A 147 LYS A 148 ASN A 149 ILE A 150 SITE 2 AC8 6 HOH A 536 HOH A 589 SITE 1 AC9 5 ASN A 149 THR A 172 ASP A 174 NA A 314 SITE 2 AC9 5 HOH A 529 SITE 1 AD1 5 GLY A 234 THR A 236 SER A 262 GLU A 264 SITE 2 AD1 5 HOH A 694 SITE 1 AD2 6 THR A 204 THR A 206 LYS A 212 HIS A 223 SITE 2 AD2 6 NA A 316 HOH A 666 SITE 1 AD3 3 LYS A 80 GLU A 106 HOH A 453 SITE 1 AD4 5 ILE A 38 GLU A 39 ASP A 40 HIS A 252 SITE 2 AD4 5 HOH A 409 SITE 1 AD5 6 GLU A 48 THR A 172 ASP A 174 NA A 309 SITE 2 AD5 6 HOH A 651 HOH A 671 SITE 1 AD6 6 SER A 115 HIS A 119 HOH A 436 HOH A 524 SITE 2 AD6 6 HOH A 676 HOH A 700 SITE 1 AD7 6 ILE A 202 THR A 204 LYS A 212 VAL A 221 SITE 2 AD7 6 HIS A 223 NA A 311 SITE 1 AD8 5 LYS A 17 ASN A 45 GLU A 48 HOH A 593 SITE 2 AD8 5 HOH A 595 SITE 1 AD9 5 LYS A 28 ASP A 261 SER A 263 HOH A 672 SITE 2 AD9 5 HOH A 710 SITE 1 AE1 5 GLN A 89 ASN A 122 ASN A 123 ASP A 126 SITE 2 AE1 5 HOH A 582 SITE 1 AE2 6 LEU A 36 GLY A 37 ASP A 40 ASN A 41 SITE 2 AE2 6 PHE A 42 LYS A 181 SITE 1 AE3 1 LYS A 99 SITE 1 AE4 4 PHE A 183 ASN A 186 ILE A 188 LEU A 189 CRYST1 94.850 67.930 45.060 90.00 94.17 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010543 0.000000 0.000769 0.00000 SCALE2 0.000000 0.014721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022251 0.00000