HEADER LYASE 18-AUG-16 5GT5 TITLE STRUCTURAL BASIS OF THE SPECIFIC ACTIVITY AND THERMOSTABILITY OF TITLE 2 PECTATE LYASE (PELN) FROM PAENIBACILLUS SP. 0602 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PECTATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.2.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS SP. 0602; SOURCE 3 ORGANISM_TAXID: 1336177; SOURCE 4 GENE: PELN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PECTATE LYASE, PAENIBACILLUS SP. 0602, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.P.ZHOU,Y.LIU,J.N.SONG REVDAT 2 08-NOV-23 5GT5 1 REMARK REVDAT 1 25-OCT-17 5GT5 0 JRNL AUTH Z.ZHOU,Y.LIU,Z.CHANG,H.WANG,A.LEIER,T.T.MARQUEZ-LAGO,Y.MA, JRNL AUTH 2 J.LI,J.SONG JRNL TITL STRUCTURE-BASED ENGINEERING OF A PECTATE LYASE WITH IMPROVED JRNL TITL 2 SPECIFIC ACTIVITY FOR RAMIE DEGUMMING. JRNL REF APPL. MICROBIOL. BIOTECHNOL. V. 101 2919 2017 JRNL REFN ESSN 1432-0614 JRNL PMID 28028551 JRNL DOI 10.1007/S00253-016-7994-6 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 143651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 7021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4405 - 4.5001 0.97 4862 249 0.1477 0.1532 REMARK 3 2 4.5001 - 3.5731 0.99 4923 268 0.1243 0.1375 REMARK 3 3 3.5731 - 3.1218 0.93 4594 274 0.1431 0.1495 REMARK 3 4 3.1218 - 2.8365 0.95 4798 233 0.1523 0.1789 REMARK 3 5 2.8365 - 2.6333 0.96 4755 227 0.1583 0.1724 REMARK 3 6 2.6333 - 2.4781 0.96 4773 266 0.1547 0.1869 REMARK 3 7 2.4781 - 2.3540 0.96 4794 230 0.1551 0.1933 REMARK 3 8 2.3540 - 2.2515 0.96 4760 237 0.1446 0.1623 REMARK 3 9 2.2515 - 2.1649 0.96 4786 262 0.1413 0.1539 REMARK 3 10 2.1649 - 2.0902 0.95 4755 225 0.1431 0.1910 REMARK 3 11 2.0902 - 2.0248 0.95 4764 219 0.1472 0.1755 REMARK 3 12 2.0248 - 1.9670 0.94 4672 245 0.1447 0.1709 REMARK 3 13 1.9670 - 1.9152 0.94 4662 231 0.1419 0.1540 REMARK 3 14 1.9152 - 1.8685 0.93 4686 243 0.1411 0.1645 REMARK 3 15 1.8685 - 1.8260 0.93 4649 233 0.1465 0.1689 REMARK 3 16 1.8260 - 1.7871 0.92 4514 250 0.1508 0.1766 REMARK 3 17 1.7871 - 1.7514 0.92 4581 240 0.1564 0.1883 REMARK 3 18 1.7514 - 1.7183 0.91 4521 214 0.1562 0.1948 REMARK 3 19 1.7183 - 1.6876 0.91 4526 241 0.1547 0.1953 REMARK 3 20 1.6876 - 1.6590 0.90 4500 219 0.1558 0.1888 REMARK 3 21 1.6590 - 1.6323 0.88 4367 207 0.1530 0.1937 REMARK 3 22 1.6323 - 1.6072 0.89 4507 234 0.1622 0.2108 REMARK 3 23 1.6072 - 1.5835 0.89 4429 210 0.1603 0.1978 REMARK 3 24 1.5835 - 1.5612 0.88 4402 233 0.1639 0.1846 REMARK 3 25 1.5612 - 1.5401 0.88 4342 230 0.1607 0.2081 REMARK 3 26 1.5401 - 1.5201 0.86 4349 219 0.1699 0.2225 REMARK 3 27 1.5201 - 1.5011 0.85 4186 228 0.1805 0.2125 REMARK 3 28 1.5011 - 1.4830 0.85 4170 219 0.1939 0.2325 REMARK 3 29 1.4830 - 1.4658 0.83 4161 211 0.1972 0.2315 REMARK 3 30 1.4658 - 1.4493 0.78 3842 224 0.2119 0.2552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6932 REMARK 3 ANGLE : 1.374 9410 REMARK 3 CHIRALITY : 0.092 1046 REMARK 3 PLANARITY : 0.007 1216 REMARK 3 DIHEDRAL : 11.167 2472 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0-4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NONIUS KAPPA CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 629583 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 3ZSC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3000, 100MM NA2HPO4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 332 CG OD1 ND2 REMARK 470 ASN B 332 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1126 O HOH A 1169 1.80 REMARK 500 O HOH A 519 O HOH A 954 1.82 REMARK 500 O HOH B 618 O HOH B 716 1.84 REMARK 500 O HOH A 601 O HOH A 621 1.85 REMARK 500 O HOH B 645 O HOH B 1025 1.87 REMARK 500 O HOH A 909 O HOH A 1098 1.88 REMARK 500 O HOH B 546 O HOH B 929 1.89 REMARK 500 O HOH A 539 O HOH A 1007 1.93 REMARK 500 O HOH A 529 O HOH A 1023 1.93 REMARK 500 O HOH A 660 O HOH A 1158 1.93 REMARK 500 O HOH A 664 O HOH A 995 1.95 REMARK 500 O HOH A 1063 O HOH A 1203 1.96 REMARK 500 O HOH A 502 O HOH B 641 1.97 REMARK 500 O HOH A 600 O HOH A 972 1.99 REMARK 500 O HOH B 1088 O HOH B 1154 1.99 REMARK 500 O HOH A 945 O HOH A 1178 1.99 REMARK 500 O HOH A 1064 O HOH A 1201 2.00 REMARK 500 O HOH A 615 O HOH A 779 2.00 REMARK 500 O HOH B 832 O HOH B 1135 2.01 REMARK 500 O HOH A 856 O HOH A 1040 2.01 REMARK 500 O HOH A 700 O HOH A 707 2.01 REMARK 500 O HOH B 509 O HOH B 830 2.02 REMARK 500 O HOH A 554 O HOH A 883 2.04 REMARK 500 O HOH A 775 O HOH A 909 2.04 REMARK 500 O HOH A 855 O HOH A 1007 2.04 REMARK 500 O HOH B 920 O HOH B 1067 2.05 REMARK 500 O HOH A 608 O HOH A 990 2.06 REMARK 500 O HOH B 802 O HOH B 896 2.06 REMARK 500 O HOH B 766 O HOH B 1133 2.06 REMARK 500 O HOH A 776 O HOH A 1013 2.07 REMARK 500 O HOH A 627 O HOH A 1005 2.08 REMARK 500 O HOH A 521 O HOH A 1124 2.08 REMARK 500 O HOH B 512 O HOH B 801 2.10 REMARK 500 O HOH B 1064 O HOH B 1100 2.10 REMARK 500 O HOH A 677 O HOH A 1041 2.10 REMARK 500 O HOH B 517 O HOH B 860 2.10 REMARK 500 O HOH B 1045 O HOH B 1213 2.10 REMARK 500 O HOH B 506 O HOH B 1031 2.10 REMARK 500 O HOH B 999 O HOH B 1121 2.11 REMARK 500 O HOH A 992 O HOH A 1088 2.12 REMARK 500 O HOH B 738 O HOH B 933 2.12 REMARK 500 O HOH A 719 O HOH A 1175 2.14 REMARK 500 O HOH A 535 O HOH A 983 2.14 REMARK 500 OE1 GLN B 412 O HOH B 501 2.14 REMARK 500 O HOH A 1074 O HOH A 1194 2.14 REMARK 500 O HOH B 656 O HOH B 1211 2.14 REMARK 500 O HOH A 504 O HOH A 923 2.14 REMARK 500 O HOH B 792 O HOH B 1082 2.15 REMARK 500 O HOH A 803 O HOH A 1088 2.15 REMARK 500 O HOH A 579 O HOH A 1018 2.15 REMARK 500 REMARK 500 THIS ENTRY HAS 66 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 588 O HOH B 840 1655 1.64 REMARK 500 O HOH A 1084 O HOH B 1213 1465 1.93 REMARK 500 O HOH B 589 O HOH B 827 1545 1.97 REMARK 500 O HOH B 703 O HOH B 1079 1565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 382 CA ARG A 382 CB 0.161 REMARK 500 ARG A 382 CZ ARG A 382 NH2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 382 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 LYS A 433 CD - CE - NZ ANGL. DEV. = 23.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 82 -33.26 -137.45 REMARK 500 ASN A 170 -154.32 -103.67 REMARK 500 ASP A 174 -116.35 -113.52 REMARK 500 ASP A 174 -118.53 -108.79 REMARK 500 LEU A 176 -66.04 -90.78 REMARK 500 ASN A 214 50.93 -147.39 REMARK 500 VAL A 229 -50.54 -123.78 REMARK 500 ARG A 276 62.43 68.38 REMARK 500 ASN A 351 116.11 -171.63 REMARK 500 ASP A 354 98.60 -168.37 REMARK 500 ASP A 368 69.22 27.70 REMARK 500 PRO A 408 21.07 -79.78 REMARK 500 THR B 82 -34.49 -136.77 REMARK 500 GLU B 158 47.66 39.06 REMARK 500 ASN B 170 -154.69 -102.47 REMARK 500 ASP B 174 -112.54 -112.62 REMARK 500 ASP B 174 -110.35 -112.49 REMARK 500 LEU B 176 -67.65 -92.33 REMARK 500 ASN B 214 52.00 -145.52 REMARK 500 VAL B 229 -50.63 -124.52 REMARK 500 ARG B 276 62.45 65.56 REMARK 500 ASN B 351 117.16 -170.14 REMARK 500 ASP B 354 101.74 -166.79 REMARK 500 ASP B 368 66.91 27.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 382 ASP A 383 -149.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1211 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1212 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1213 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A1214 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1215 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B1243 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1244 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B1245 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B1246 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B1247 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B1248 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH B1249 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH B1250 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH B1251 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH B1252 DISTANCE = 7.43 ANGSTROMS DBREF 5GT5 A 2 446 UNP W8CR80 W8CR80_9BACL 31 475 DBREF 5GT5 B 2 446 UNP W8CR80 W8CR80_9BACL 31 475 SEQADV 5GT5 MET A 1 UNP W8CR80 EXPRESSION TAG SEQADV 5GT5 VAL A 168 UNP W8CR80 GLY 197 ENGINEERED MUTATION SEQADV 5GT5 MET B 1 UNP W8CR80 EXPRESSION TAG SEQADV 5GT5 VAL B 168 UNP W8CR80 GLY 197 ENGINEERED MUTATION SEQRES 1 A 446 MET ALA GLY ASN ALA ASP TYR ASN LEU THR GLY PHE SER SEQRES 2 A 446 GLN GLY ASN THR GLY GLY GLY VAL ILE SER GLU SER ASN SEQRES 3 A 446 THR ALA VAL TYR LYS LYS VAL TYR ASN ALA THR ASP LEU SEQRES 4 A 446 ALA LEU ALA LEU LYS LYS ASN SER GLY VAL LYS VAL VAL SEQRES 5 A 446 GLU ILE MET ASN ASP LEU ASN LEU GLY TRP ASN GLU ILE SEQRES 6 A 446 PRO SER ALA ALA GLN THR SER PRO PHE ALA LYS HIS ASN SEQRES 7 A 446 ASP ALA LEU THR HIS PRO VAL LEU LYS GLN THR GLY VAL SEQRES 8 A 446 SER LYS ILE THR VAL ASP GLY PHE ASN GLY LEU THR ILE SEQRES 9 A 446 PHE SER ALA ASN GLY SER LYS ILE LYS HIS ALA ALA ILE SEQRES 10 A 446 SER VAL LYS ARG SER SER ASN VAL ILE ILE ARG ASN LEU SEQRES 11 A 446 GLU PHE ASP GLU LEU TRP GLU TRP ASP GLU SER THR LYS SEQRES 12 A 446 GLY ASP TYR ASP LYS ASN ASP TRP ASP TYR ILE THR LEU SEQRES 13 A 446 GLU GLU SER SER GLY VAL TRP ILE ASP HIS CYS VAL PHE SEQRES 14 A 446 ASN LYS ALA TYR ASP GLY LEU VAL ASP SER LYS LYS GLY SEQRES 15 A 446 THR SER GLY VAL THR ILE SER TRP SER THR PHE LYS GLY SEQRES 16 A 446 ASP ASP GLY SER PRO ASN SER TRP VAL THR ARG GLN ILE SEQRES 17 A 446 ASN GLU MET GLU ALA ASN LYS ALA SER TYR PRO MET TYR SEQRES 18 A 446 ASN TYR LEU ARG SER SER ALA VAL GLY LEU SER LYS GLU SEQRES 19 A 446 ASP ILE ILE ALA ILE SER GLY SER GLN LYS LYS GLY HIS SEQRES 20 A 446 LEU VAL GLY ALA THR SER ASP GLU SER ALA ASN ALA ASN SEQRES 21 A 446 LEU SER ILE THR LEU HIS HIS ASN VAL TYR LYS ASP ILE SEQRES 22 A 446 GLN ASP ARG MET PRO ARG LEU ARG GLY GLY ASN ALA HIS SEQRES 23 A 446 ALA TYR ASN ILE ILE MET ASP ALA THR ASP ALA ARG ALA SEQRES 24 A 446 ALA GLN THR ARG ILE THR SER GLY MET ALA ALA ALA ILE SEQRES 25 A 446 ALA SER LYS GLY TYR LYS PHE GLY ILE THR SER ASN GLY SEQRES 26 A 446 ALA ILE SER THR GLU SER ASN ALA VAL LEU VAL GLU LYS SEQRES 27 A 446 SER VAL ILE LYS ASP VAL GLN TYR PRO VAL ARG ASN ASN SEQRES 28 A 446 GLN THR ASP PRO THR ASN ALA THR TYR THR GLY LYS ILE SEQRES 29 A 446 ARG VAL ALA ASP THR ILE TYR SER LEU ASP GLY SER SER SEQRES 30 A 446 PHE ARG GLY SER ARG ASP THR ALA GLY SER PRO LEU ALA SEQRES 31 A 446 PRO VAL PRO ALA ALA ILE LYS PRO PHE SER TRP ASN GLY SEQRES 32 A 446 PHE SER ILE LEU PRO TYR SER TYR GLN LEU ASP ASP PRO SEQRES 33 A 446 SER THR LEU ASN ALA ARG LEU THR ALA SER ASN GLY ALA SEQRES 34 A 446 GLY ALA GLY LYS LEU SER TRP SER LYS ASP ASN TRP LEU SEQRES 35 A 446 LYS THR SER TYR SEQRES 1 B 446 MET ALA GLY ASN ALA ASP TYR ASN LEU THR GLY PHE SER SEQRES 2 B 446 GLN GLY ASN THR GLY GLY GLY VAL ILE SER GLU SER ASN SEQRES 3 B 446 THR ALA VAL TYR LYS LYS VAL TYR ASN ALA THR ASP LEU SEQRES 4 B 446 ALA LEU ALA LEU LYS LYS ASN SER GLY VAL LYS VAL VAL SEQRES 5 B 446 GLU ILE MET ASN ASP LEU ASN LEU GLY TRP ASN GLU ILE SEQRES 6 B 446 PRO SER ALA ALA GLN THR SER PRO PHE ALA LYS HIS ASN SEQRES 7 B 446 ASP ALA LEU THR HIS PRO VAL LEU LYS GLN THR GLY VAL SEQRES 8 B 446 SER LYS ILE THR VAL ASP GLY PHE ASN GLY LEU THR ILE SEQRES 9 B 446 PHE SER ALA ASN GLY SER LYS ILE LYS HIS ALA ALA ILE SEQRES 10 B 446 SER VAL LYS ARG SER SER ASN VAL ILE ILE ARG ASN LEU SEQRES 11 B 446 GLU PHE ASP GLU LEU TRP GLU TRP ASP GLU SER THR LYS SEQRES 12 B 446 GLY ASP TYR ASP LYS ASN ASP TRP ASP TYR ILE THR LEU SEQRES 13 B 446 GLU GLU SER SER GLY VAL TRP ILE ASP HIS CYS VAL PHE SEQRES 14 B 446 ASN LYS ALA TYR ASP GLY LEU VAL ASP SER LYS LYS GLY SEQRES 15 B 446 THR SER GLY VAL THR ILE SER TRP SER THR PHE LYS GLY SEQRES 16 B 446 ASP ASP GLY SER PRO ASN SER TRP VAL THR ARG GLN ILE SEQRES 17 B 446 ASN GLU MET GLU ALA ASN LYS ALA SER TYR PRO MET TYR SEQRES 18 B 446 ASN TYR LEU ARG SER SER ALA VAL GLY LEU SER LYS GLU SEQRES 19 B 446 ASP ILE ILE ALA ILE SER GLY SER GLN LYS LYS GLY HIS SEQRES 20 B 446 LEU VAL GLY ALA THR SER ASP GLU SER ALA ASN ALA ASN SEQRES 21 B 446 LEU SER ILE THR LEU HIS HIS ASN VAL TYR LYS ASP ILE SEQRES 22 B 446 GLN ASP ARG MET PRO ARG LEU ARG GLY GLY ASN ALA HIS SEQRES 23 B 446 ALA TYR ASN ILE ILE MET ASP ALA THR ASP ALA ARG ALA SEQRES 24 B 446 ALA GLN THR ARG ILE THR SER GLY MET ALA ALA ALA ILE SEQRES 25 B 446 ALA SER LYS GLY TYR LYS PHE GLY ILE THR SER ASN GLY SEQRES 26 B 446 ALA ILE SER THR GLU SER ASN ALA VAL LEU VAL GLU LYS SEQRES 27 B 446 SER VAL ILE LYS ASP VAL GLN TYR PRO VAL ARG ASN ASN SEQRES 28 B 446 GLN THR ASP PRO THR ASN ALA THR TYR THR GLY LYS ILE SEQRES 29 B 446 ARG VAL ALA ASP THR ILE TYR SER LEU ASP GLY SER SER SEQRES 30 B 446 PHE ARG GLY SER ARG ASP THR ALA GLY SER PRO LEU ALA SEQRES 31 B 446 PRO VAL PRO ALA ALA ILE LYS PRO PHE SER TRP ASN GLY SEQRES 32 B 446 PHE SER ILE LEU PRO TYR SER TYR GLN LEU ASP ASP PRO SEQRES 33 B 446 SER THR LEU ASN ALA ARG LEU THR ALA SER ASN GLY ALA SEQRES 34 B 446 GLY ALA GLY LYS LEU SER TRP SER LYS ASP ASN TRP LEU SEQRES 35 B 446 LYS THR SER TYR FORMUL 3 HOH *1465(H2 O) HELIX 1 AA1 GLY A 3 ASN A 8 5 6 HELIX 2 AA2 THR A 10 GLN A 14 5 5 HELIX 3 AA3 ASN A 35 LYS A 44 1 10 HELIX 4 AA4 PRO A 66 GLN A 70 5 5 HELIX 5 AA5 HIS A 83 GLY A 90 1 8 HELIX 6 AA6 SER A 202 ALA A 213 1 12 HELIX 7 AA7 ASN A 214 SER A 217 5 4 HELIX 8 AA8 TYR A 218 SER A 226 1 9 HELIX 9 AA9 SER A 232 SER A 242 1 11 HELIX 10 AB1 GLU A 255 ASN A 260 5 6 HELIX 11 AB2 ALA A 294 THR A 302 1 9 HELIX 12 AB3 THR A 305 LYS A 315 1 11 HELIX 13 AB4 ASN A 357 THR A 361 5 5 HELIX 14 AB5 ASP A 415 SER A 417 5 3 HELIX 15 AB6 THR A 418 THR A 424 1 7 HELIX 16 AB7 SER A 437 LYS A 443 5 7 HELIX 17 AB8 GLY B 3 ASN B 8 5 6 HELIX 18 AB9 THR B 10 GLN B 14 5 5 HELIX 19 AC1 ASN B 35 LYS B 44 1 10 HELIX 20 AC2 PRO B 66 GLN B 70 5 5 HELIX 21 AC3 HIS B 83 GLY B 90 1 8 HELIX 22 AC4 SER B 202 ALA B 213 1 12 HELIX 23 AC5 ASN B 214 SER B 217 5 4 HELIX 24 AC6 TYR B 218 SER B 226 1 9 HELIX 25 AC7 SER B 232 SER B 242 1 11 HELIX 26 AC8 GLU B 255 ASN B 260 5 6 HELIX 27 AC9 ALA B 294 THR B 302 1 9 HELIX 28 AD1 THR B 305 LYS B 315 1 11 HELIX 29 AD2 ASN B 357 THR B 361 5 5 HELIX 30 AD3 ASP B 415 SER B 417 5 3 HELIX 31 AD4 THR B 418 THR B 424 1 7 HELIX 32 AD5 SER B 437 LYS B 443 5 7 SHEET 1 AA110 TYR A 30 VAL A 33 0 SHEET 2 AA110 VAL A 51 ILE A 54 1 O GLU A 53 N VAL A 33 SHEET 3 AA110 ASN A 100 SER A 106 1 O PHE A 105 N ILE A 54 SHEET 4 AA110 SER A 123 ARG A 128 1 O ILE A 126 N ILE A 104 SHEET 5 AA110 SER A 160 ASP A 165 1 O TRP A 163 N ILE A 127 SHEET 6 AA110 SER A 184 SER A 189 1 O THR A 187 N VAL A 162 SHEET 7 AA110 SER A 262 HIS A 266 1 O THR A 264 N ILE A 188 SHEET 8 AA110 ASN A 284 TYR A 288 1 O HIS A 286 N LEU A 265 SHEET 9 AA110 ALA A 333 GLU A 337 1 O LEU A 335 N ALA A 287 SHEET 10 AA110 LYS A 363 ALA A 367 1 O ALA A 367 N VAL A 336 SHEET 1 AA210 LEU A 58 ASN A 59 0 SHEET 2 AA210 LYS A 111 LYS A 113 1 O LYS A 111 N LEU A 58 SHEET 3 AA210 GLU A 131 ASP A 133 1 O GLU A 131 N ILE A 112 SHEET 4 AA210 VAL A 168 PHE A 169 1 O VAL A 168 N PHE A 132 SHEET 5 AA210 THR A 192 LYS A 194 1 O LYS A 194 N PHE A 169 SHEET 6 AA210 VAL A 269 LYS A 271 1 O LYS A 271 N PHE A 193 SHEET 7 AA210 ILE A 291 ASP A 293 1 O ILE A 291 N TYR A 270 SHEET 8 AA210 VAL A 340 LYS A 342 1 O LYS A 342 N MET A 292 SHEET 9 AA210 THR A 369 SER A 372 1 O ILE A 370 N ILE A 341 SHEET 10 AA210 PHE A 378 GLY A 380 -1 O PHE A 378 N TYR A 371 SHEET 1 AA3 5 PHE A 74 LYS A 76 0 SHEET 2 AA3 5 SER A 92 ASP A 97 -1 O LYS A 93 N ALA A 75 SHEET 3 AA3 5 ALA A 115 LYS A 120 1 O ALA A 116 N ILE A 94 SHEET 4 AA3 5 ILE A 154 GLU A 157 1 O THR A 155 N VAL A 119 SHEET 5 AA3 5 VAL A 177 LYS A 180 1 O LYS A 180 N LEU A 156 SHEET 1 AA4 4 LEU A 248 VAL A 249 0 SHEET 2 AA4 4 ARG A 279 ARG A 281 1 O ARG A 279 N VAL A 249 SHEET 3 AA4 4 ASN A 324 THR A 329 1 O ILE A 327 N LEU A 280 SHEET 4 AA4 4 TYR A 346 ARG A 349 1 O PRO A 347 N ALA A 326 SHEET 1 AA510 TYR B 30 VAL B 33 0 SHEET 2 AA510 VAL B 51 ILE B 54 1 O GLU B 53 N VAL B 33 SHEET 3 AA510 ASN B 100 SER B 106 1 O PHE B 105 N ILE B 54 SHEET 4 AA510 SER B 123 ARG B 128 1 O ILE B 126 N ILE B 104 SHEET 5 AA510 SER B 160 ASP B 165 1 O TRP B 163 N ILE B 127 SHEET 6 AA510 SER B 184 SER B 189 1 O THR B 187 N VAL B 162 SHEET 7 AA510 SER B 262 HIS B 266 1 O THR B 264 N ILE B 188 SHEET 8 AA510 ASN B 284 TYR B 288 1 O HIS B 286 N LEU B 265 SHEET 9 AA510 ALA B 333 GLU B 337 1 O LEU B 335 N ALA B 287 SHEET 10 AA510 LYS B 363 ALA B 367 1 O ALA B 367 N VAL B 336 SHEET 1 AA610 LEU B 58 ASN B 59 0 SHEET 2 AA610 LYS B 111 LYS B 113 1 O LYS B 111 N LEU B 58 SHEET 3 AA610 GLU B 131 ASP B 133 1 O GLU B 131 N ILE B 112 SHEET 4 AA610 VAL B 168 PHE B 169 1 O VAL B 168 N PHE B 132 SHEET 5 AA610 THR B 192 LYS B 194 1 O LYS B 194 N PHE B 169 SHEET 6 AA610 VAL B 269 LYS B 271 1 O LYS B 271 N PHE B 193 SHEET 7 AA610 ILE B 291 ASP B 293 1 O ILE B 291 N TYR B 270 SHEET 8 AA610 VAL B 340 LYS B 342 1 O LYS B 342 N MET B 292 SHEET 9 AA610 THR B 369 SER B 372 1 O ILE B 370 N ILE B 341 SHEET 10 AA610 PHE B 378 GLY B 380 -1 O PHE B 378 N TYR B 371 SHEET 1 AA7 5 PHE B 74 LYS B 76 0 SHEET 2 AA7 5 SER B 92 ASP B 97 -1 O LYS B 93 N ALA B 75 SHEET 3 AA7 5 ALA B 115 LYS B 120 1 O LYS B 120 N VAL B 96 SHEET 4 AA7 5 ILE B 154 GLU B 157 1 O THR B 155 N VAL B 119 SHEET 5 AA7 5 VAL B 177 LYS B 180 1 O LYS B 180 N LEU B 156 SHEET 1 AA8 4 LEU B 248 VAL B 249 0 SHEET 2 AA8 4 ARG B 279 ARG B 281 1 O ARG B 279 N VAL B 249 SHEET 3 AA8 4 ASN B 324 THR B 329 1 O ILE B 327 N LEU B 280 SHEET 4 AA8 4 TYR B 346 ARG B 349 1 O PRO B 347 N ALA B 326 CISPEP 1 SER A 72 PRO A 73 0 13.60 CISPEP 2 MET A 277 PRO A 278 0 -6.88 CISPEP 3 VAL A 392 PRO A 393 0 2.64 CISPEP 4 SER B 72 PRO B 73 0 14.01 CISPEP 5 MET B 277 PRO B 278 0 -7.81 CISPEP 6 VAL B 392 PRO B 393 0 2.46 CRYST1 53.552 55.584 83.182 74.26 84.40 73.51 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018673 -0.005529 -0.000433 0.00000 SCALE2 0.000000 0.018763 -0.004954 0.00000 SCALE3 0.000000 0.000000 0.012493 0.00000