HEADER HYDROLASE 23-AUG-16 5GTU TITLE STRUCTURAL AND MECHANISTIC INSIGHTS INTO REGULATION OF THE RETROMER TITLE 2 COAT BY TBC1D5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 29; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-182; COMPND 5 SYNONYM: HVPS29,PEP11 HOMOLOG,VESICLE PROTEIN SORTING 29; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TBC1 DOMAIN FAMILY MEMBER 5; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 132-158; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VPS29, DC15, DC7, MDS007; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TBC1D5, KIAA0210; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, CELLULAR TRAFFICKING, ENDOSOMAL SORTING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.JIA,M.ROSEN REVDAT 4 08-NOV-23 5GTU 1 REMARK REVDAT 3 23-MAR-22 5GTU 1 REMARK REVDAT 2 18-OCT-17 5GTU 1 REMARK REVDAT 1 07-DEC-16 5GTU 0 JRNL AUTH D.JIA,J.S.ZHANG,F.LI,J.WANG,Z.DENG,M.A.WHITE,D.G.OSBORNE, JRNL AUTH 2 C.PHILLIPS-KRAWCZAK,T.S.GOMEZ,H.LI,A.SINGLA,E.BURSTEIN, JRNL AUTH 3 D.D.BILLADEAU,M.K.ROSEN JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO REGULATION OF THE JRNL TITL 2 RETROMER COAT BY TBC1D5 JRNL REF NAT COMMUN V. 7 13305 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27827364 JRNL DOI 10.1038/NCOMMS13305 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 33729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1407 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2016 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1672 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -0.81000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.122 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1710 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1654 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2314 ; 2.288 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3807 ; 1.201 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 6.577 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;42.305 ;25.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 298 ;13.507 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;11.075 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 259 ; 0.169 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1918 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 393 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 838 ; 2.523 ; 1.828 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 837 ; 2.502 ; 1.826 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1044 ; 3.004 ; 2.738 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1045 ; 3.004 ; 2.741 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 872 ; 3.957 ; 2.255 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 873 ; 3.959 ; 2.258 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1271 ; 4.306 ; 3.230 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1971 ; 4.392 ;16.161 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1919 ; 4.218 ;15.754 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3364 ; 4.832 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 46 ;26.526 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3420 ; 8.529 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0945 -3.7984 -8.6209 REMARK 3 T TENSOR REMARK 3 T11: 0.0168 T22: 0.0050 REMARK 3 T33: 0.0744 T12: 0.0079 REMARK 3 T13: 0.0122 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.5928 L22: 1.5645 REMARK 3 L33: 1.6338 L12: 0.1403 REMARK 3 L13: 0.2510 L23: -0.3021 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: 0.0213 S13: 0.1383 REMARK 3 S21: 0.0650 S22: 0.0222 S23: 0.0535 REMARK 3 S31: -0.1492 S32: -0.0606 S33: 0.0029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GTU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Z2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, PH6.0, 2% TACSIMATE, PH REMARK 280 6.0, 15~20% PEG3350, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.94050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.00500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.91600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.00500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.94050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.91600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 132 REMARK 465 GLN B 133 REMARK 465 GLU B 158 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 13 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 303 O HOH A 324 1.84 REMARK 500 SG CYS A 15 O HOH A 308 2.05 REMARK 500 O HOH A 278 O HOH A 328 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ILE A 58 CA - CB - CG1 ANGL. DEV. = 13.0 DEGREES REMARK 500 GLU A 71 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 GLU A 71 CG - CD - OE1 ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 115 -38.61 73.77 REMARK 500 ALA A 157 -128.18 49.18 REMARK 500 GLU B 146 -37.88 -39.20 REMARK 500 ASP B 156 81.47 -64.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z2X RELATED DB: PDB REMARK 900 RELATED ID: 1W24 RELATED DB: PDB DBREF 5GTU A 2 182 UNP Q9UBQ0 VPS29_HUMAN 2 182 DBREF 5GTU B 132 158 UNP Q92609 TBCD5_HUMAN 132 158 SEQADV 5GTU MET A -3 UNP Q9UBQ0 INITIATING METHIONINE SEQADV 5GTU ALA A -2 UNP Q9UBQ0 EXPRESSION TAG SEQADV 5GTU GLY A -1 UNP Q9UBQ0 EXPRESSION TAG SEQADV 5GTU HIS A 0 UNP Q9UBQ0 EXPRESSION TAG SEQADV 5GTU ARG A 1 UNP Q9UBQ0 EXPRESSION TAG SEQRES 1 A 186 MET ALA GLY HIS ARG LEU VAL LEU VAL LEU GLY ASP LEU SEQRES 2 A 186 HIS ILE PRO HIS ARG CYS ASN SER LEU PRO ALA LYS PHE SEQRES 3 A 186 LYS LYS LEU LEU VAL PRO GLY LYS ILE GLN HIS ILE LEU SEQRES 4 A 186 CYS THR GLY ASN LEU CYS THR LYS GLU SER TYR ASP TYR SEQRES 5 A 186 LEU LYS THR LEU ALA GLY ASP VAL HIS ILE VAL ARG GLY SEQRES 6 A 186 ASP PHE ASP GLU ASN LEU ASN TYR PRO GLU GLN LYS VAL SEQRES 7 A 186 VAL THR VAL GLY GLN PHE LYS ILE GLY LEU ILE HIS GLY SEQRES 8 A 186 HIS GLN VAL ILE PRO TRP GLY ASP MET ALA SER LEU ALA SEQRES 9 A 186 LEU LEU GLN ARG GLN PHE ASP VAL ASP ILE LEU ILE SER SEQRES 10 A 186 GLY HIS THR HIS LYS PHE GLU ALA PHE GLU HIS GLU ASN SEQRES 11 A 186 LYS PHE TYR ILE ASN PRO GLY SER ALA THR GLY ALA TYR SEQRES 12 A 186 ASN ALA LEU GLU THR ASN ILE ILE PRO SER PHE VAL LEU SEQRES 13 A 186 MET ASP ILE GLN ALA SER THR VAL VAL THR TYR VAL TYR SEQRES 14 A 186 GLN LEU ILE GLY ASP ASP VAL LYS VAL GLU ARG ILE GLU SEQRES 15 A 186 TYR LYS LYS PRO SEQRES 1 B 27 GLY GLN GLN ASP LEU MET ILE ASN ASN PRO LEU SER GLN SEQRES 2 B 27 ASP GLU GLY SER LEU TRP ASN LYS PHE PHE GLN ASP LYS SEQRES 3 B 27 GLU FORMUL 3 HOH *140(H2 O) HELIX 1 AA1 PRO A 19 LEU A 26 1 8 HELIX 2 AA2 THR A 42 ALA A 53 1 12 HELIX 3 AA3 ASP A 95 ASP A 107 1 13 HELIX 4 AA4 SER B 148 ASP B 156 1 9 SHEET 1 AA1 6 ASP A 55 ILE A 58 0 SHEET 2 AA1 6 HIS A 33 CYS A 36 1 N CYS A 36 O HIS A 57 SHEET 3 AA1 6 ARG A 1 LEU A 6 1 N LEU A 4 O LEU A 35 SHEET 4 AA1 6 SER A 149 GLN A 156 -1 O MET A 153 N VAL A 3 SHEET 5 AA1 6 THR A 159 ILE A 168 -1 O TYR A 163 N LEU A 152 SHEET 6 AA1 6 ASP A 171 LYS A 180 -1 O ASP A 171 N ILE A 168 SHEET 1 AA2 5 GLN A 72 VAL A 77 0 SHEET 2 AA2 5 PHE A 80 ILE A 85 -1 O ILE A 82 N VAL A 75 SHEET 3 AA2 5 ILE A 110 SER A 113 1 O ILE A 110 N GLY A 83 SHEET 4 AA2 5 LYS A 127 PRO A 132 1 O PHE A 128 N LEU A 111 SHEET 5 AA2 5 PHE A 119 HIS A 124 -1 N PHE A 122 O TYR A 129 CISPEP 1 ILE A 11 PRO A 12 0 11.94 CISPEP 2 LEU A 40 CYS A 41 0 6.73 CISPEP 3 ILE A 91 PRO A 92 0 -2.24 CRYST1 43.881 63.832 78.010 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022789 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012819 0.00000