data_5GWL # _entry.id 5GWL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5GWL pdb_00005gwl 10.2210/pdb5gwl/pdb WWPDB D_1300001544 ? ? BMRB 36020 ? 10.13018/BMR36020 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-10-12 2 'Structure model' 1 1 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' entity 5 2 'Structure model' pdbx_nmr_software 6 2 'Structure model' pdbx_nmr_spectrometer 7 2 'Structure model' pdbx_prerelease_seq 8 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_entity.pdbx_number_of_molecules' 4 2 'Structure model' '_pdbx_nmr_software.name' 5 2 'Structure model' '_pdbx_nmr_spectrometer.model' 6 2 'Structure model' '_struct_conn.pdbx_dist_value' 7 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 9 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5GWL _pdbx_database_status.recvd_initial_deposition_date 2016-09-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB . 36020 unspecified PDB . 5GWQ unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guo, P.' 1 'Lam, S.L.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 138 _citation.language ? _citation.page_first 12534 _citation.page_last 12540 _citation.title 'Minidumbbell: A New Form of Native DNA Structure' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.6b06897 _citation.pdbx_database_id_PubMed 27589409 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guo, P.' 1 ? primary 'Lam, S.L.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*TP*GP*CP*CP*TP*G)-3') ; 2378.567 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 7 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DT)(DG)(DC)(DC)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCTGCCTG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DT n 1 8 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 9 NA NA A . C 2 NA 1 102 10 NA NA A . D 2 NA 1 103 11 NA NA A . E 2 NA 1 104 12 NA NA A . F 2 NA 1 105 13 NA NA A . G 2 NA 1 106 14 NA NA A . H 2 NA 1 107 15 NA NA A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5GWL _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5GWL _struct.title 'Structure of two CCTG repeats' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5GWL _struct_keywords.text 'Minidumbbell, type II loop, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5GWL _struct_ref.pdbx_db_accession 5GWL _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5GWL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5GWL _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 760 ? 1 MORE -64 ? 1 'SSA (A^2)' 1620 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 2 OP2 ? ? ? 1_555 D NA . NA ? ? A DC 2 A NA 103 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc2 metalc ? ? A DT 3 OP2 ? ? ? 1_555 D NA . NA ? ? A DT 3 A NA 103 1_555 ? ? ? ? ? ? ? 7.159 ? ? metalc3 metalc ? ? A DT 3 OP1 ? ? ? 1_555 E NA . NA ? ? A DT 3 A NA 104 1_555 ? ? ? ? ? ? ? 7.198 ? ? metalc4 metalc ? ? A DG 4 OP2 ? ? ? 1_555 B NA . NA ? ? A DG 4 A NA 101 1_555 ? ? ? ? ? ? ? 4.671 ? ? metalc5 metalc ? ? A DG 4 OP1 ? ? ? 1_555 E NA . NA ? ? A DG 4 A NA 104 1_555 ? ? ? ? ? ? ? 3.927 ? ? metalc6 metalc ? ? A DC 5 OP1 ? ? ? 1_555 G NA . NA ? ? A DC 5 A NA 106 1_555 ? ? ? ? ? ? ? 2.148 ? ? metalc7 metalc ? ? A DC 6 O2 ? ? ? 1_555 F NA . NA ? ? A DC 6 A NA 105 1_555 ? ? ? ? ? ? ? 2.288 ? ? metalc8 metalc ? ? A DC 6 OP1 ? ? ? 1_555 G NA . NA ? ? A DC 6 A NA 106 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc9 metalc ? ? A DC 6 OP2 ? ? ? 1_555 G NA . NA ? ? A DC 6 A NA 106 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc10 metalc ? ? A DT 7 OP1 ? ? ? 1_555 C NA . NA ? ? A DT 7 A NA 102 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc11 metalc ? ? A DT 7 OP2 ? ? ? 1_555 C NA . NA ? ? A DT 7 A NA 102 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc12 metalc ? ? A DT 7 O2 ? ? ? 1_555 H NA . NA ? ? A DT 7 A NA 107 1_555 ? ? ? ? ? ? ? 2.239 ? ? metalc13 metalc ? ? A DG 8 OP2 ? ? ? 1_555 F NA . NA ? ? A DG 8 A NA 105 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc14 metalc ? ? A DG 8 OP1 ? ? ? 1_555 H NA . NA ? ? A DG 8 A NA 107 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc15 metalc ? ? A DG 8 O6 ? ? ? 1_555 H NA . NA ? ? A DG 8 A NA 107 1_555 ? ? ? ? ? ? ? 2.320 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DC 6 N4 ? ? A DC 2 A DC 6 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog5 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A DC 2 ? A DC 2 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP2 ? A DT 3 ? A DT 3 ? 1_555 53.1 ? 2 OP1 ? A DT 3 ? A DT 3 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP1 ? A DG 4 ? A DG 4 ? 1_555 15.9 ? 3 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 OP1 ? A DC 6 ? A DC 6 ? 1_555 110.7 ? 4 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 OP2 ? A DC 6 ? A DC 6 ? 1_555 119.0 ? 5 OP1 ? A DC 6 ? A DC 6 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 OP2 ? A DC 6 ? A DC 6 ? 1_555 65.7 ? 6 O2 ? A DC 6 ? A DC 6 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP2 ? A DG 8 ? A DG 8 ? 1_555 96.9 ? 7 OP1 ? A DT 7 ? A DT 7 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DT 7 ? A DT 7 ? 1_555 66.2 ? 8 O2 ? A DT 7 ? A DT 7 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 OP1 ? A DG 8 ? A DG 8 ? 1_555 103.1 ? 9 O2 ? A DT 7 ? A DT 7 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 88.1 ? 10 OP1 ? A DG 8 ? A DG 8 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 106.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 101 ? 1 'binding site for residue NA A 101' AC2 Software A NA 102 ? 1 'binding site for residue NA A 102' AC3 Software A NA 103 ? 2 'binding site for residue NA A 103' AC4 Software A NA 104 ? 2 'binding site for residue NA A 104' AC5 Software A NA 105 ? 3 'binding site for residue NA A 105' AC6 Software A NA 106 ? 2 'binding site for residue NA A 106' AC7 Software A NA 107 ? 2 'binding site for residue NA A 107' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC2 1 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC3 2 DC A 2 ? DC A 2 . ? 1_555 ? 4 AC3 2 DT A 3 ? DT A 3 . ? 1_555 ? 5 AC4 2 DT A 3 ? DT A 3 . ? 1_555 ? 6 AC4 2 DG A 4 ? DG A 4 . ? 1_555 ? 7 AC5 3 DC A 2 ? DC A 2 . ? 1_555 ? 8 AC5 3 DC A 6 ? DC A 6 . ? 1_555 ? 9 AC5 3 DG A 8 ? DG A 8 . ? 1_555 ? 10 AC6 2 DC A 5 ? DC A 5 . ? 1_555 ? 11 AC6 2 DC A 6 ? DC A 6 . ? 1_555 ? 12 AC7 2 DT A 7 ? DT A 7 . ? 1_555 ? 13 AC7 2 DG A 8 ? DG A 8 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.48 108.30 4.18 0.30 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.46 108.30 5.16 0.30 N 3 1 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.11 121.90 -4.79 0.70 N 4 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.53 108.30 2.23 0.30 N 5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.99 108.30 4.69 0.30 N 6 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 114.04 108.30 5.74 0.30 N 7 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.53 118.90 3.63 0.60 N 8 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.57 121.90 -5.33 0.70 N 9 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.00 108.30 3.70 0.30 N 10 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.28 122.90 -3.62 0.60 N 11 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.77 108.30 3.47 0.30 N 12 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.65 108.30 4.35 0.30 N 13 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.77 108.30 4.47 0.30 N 14 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.13 108.30 1.83 0.30 N 15 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.33 108.30 4.03 0.30 N 16 2 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.50 118.90 3.60 0.60 N 17 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.74 108.30 4.44 0.30 N 18 2 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.64 118.90 3.74 0.60 N 19 2 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.51 121.90 -5.39 0.70 N 20 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.76 108.30 4.46 0.30 N 21 2 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.06 122.90 -3.84 0.60 N 22 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.42 108.30 3.12 0.30 N 23 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.80 108.30 3.50 0.30 N 24 3 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 116.28 108.30 7.98 0.30 N 25 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.16 108.30 2.86 0.30 N 26 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.37 108.30 4.07 0.30 N 27 3 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.59 121.90 -4.31 0.70 N 28 3 N3 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 113.77 118.00 -4.23 0.70 N 29 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.26 108.30 3.96 0.30 N 30 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.92 108.30 4.62 0.30 N 31 3 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.03 122.90 -3.87 0.60 N 32 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.53 108.30 2.23 0.30 N 33 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.84 108.30 4.54 0.30 N 34 4 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.55 108.30 4.25 0.30 N 35 4 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.50 121.90 -5.40 0.70 N 36 4 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.24 122.90 -3.66 0.60 N 37 4 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 116.26 119.90 -3.64 0.60 N 38 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.97 108.30 3.67 0.30 N 39 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 115.31 108.30 7.01 0.30 N 40 4 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.69 118.90 3.79 0.60 N 41 4 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.32 121.90 -4.58 0.70 N 42 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.86 108.30 2.56 0.30 N 43 4 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.47 122.90 -4.43 0.60 N 44 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.41 108.30 2.11 0.30 N 45 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.26 108.30 3.96 0.30 N 46 5 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.65 121.90 -4.25 0.70 N 47 5 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 97.34 102.40 -5.06 0.80 N 48 5 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.33 108.30 4.03 0.30 N 49 5 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.47 121.90 -5.43 0.70 N 50 5 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.12 108.30 1.82 0.30 N 51 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.18 108.30 2.88 0.30 N 52 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.12 108.30 2.82 0.30 N 53 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.68 108.30 4.38 0.30 N 54 5 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.38 118.90 4.48 0.60 N 55 5 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.76 121.90 -6.14 0.70 N 56 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.64 108.30 3.34 0.30 N 57 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.18 108.30 3.88 0.30 N 58 5 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 116.21 119.90 -3.69 0.60 N 59 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.23 108.30 3.93 0.30 N 60 6 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.66 108.30 5.36 0.30 N 61 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.60 108.30 2.30 0.30 N 62 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.40 108.30 5.10 0.30 N 63 6 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.67 118.90 3.77 0.60 N 64 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.87 108.30 4.57 0.30 N 65 6 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.64 118.90 3.74 0.60 N 66 6 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.15 121.90 -4.75 0.70 N 67 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.24 108.30 2.94 0.30 N 68 6 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.55 122.90 -4.35 0.60 N 69 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.24 108.30 2.94 0.30 N 70 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.00 108.30 4.70 0.30 N 71 7 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.37 108.30 4.07 0.30 N 72 7 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.93 118.90 4.03 0.60 N 73 7 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.29 121.90 -5.61 0.70 N 74 7 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.88 108.30 3.58 0.30 N 75 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.80 108.30 4.50 0.30 N 76 7 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 114.98 108.30 6.68 0.30 N 77 7 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.65 121.90 -4.25 0.70 N 78 7 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.92 122.90 -3.98 0.60 N 79 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.95 108.30 4.65 0.30 N 80 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.25 108.30 3.95 0.30 N 81 8 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.43 108.30 3.13 0.30 N 82 8 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.11 121.90 -4.79 0.70 N 83 8 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.44 108.30 4.14 0.30 N 84 8 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.28 122.90 -3.62 0.60 N 85 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.01 108.30 2.71 0.30 N 86 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.84 108.30 4.54 0.30 N 87 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.23 108.30 2.93 0.30 N 88 8 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.92 118.90 4.02 0.60 N 89 8 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.35 121.90 -5.55 0.70 N 90 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.36 108.30 3.06 0.30 N 91 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.37 108.30 5.07 0.30 N 92 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.19 108.30 4.89 0.30 N 93 9 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.93 108.30 4.63 0.30 N 94 9 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.41 108.30 3.11 0.30 N 95 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.39 108.30 5.09 0.30 N 96 9 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.72 118.90 3.82 0.60 N 97 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.04 108.30 4.74 0.30 N 98 9 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.64 118.90 3.74 0.60 N 99 9 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.22 121.90 -4.68 0.70 N 100 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.53 108.30 3.23 0.30 N 101 9 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.78 122.90 -4.12 0.60 N 102 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.71 108.30 3.41 0.30 N 103 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.99 108.30 2.69 0.30 N 104 10 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.58 121.90 -4.32 0.70 N 105 10 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.41 108.30 3.11 0.30 N 106 10 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.09 108.30 3.79 0.30 N 107 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.24 108.30 4.94 0.30 N 108 10 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.80 118.90 3.90 0.60 N 109 10 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.85 121.90 -5.05 0.70 N 110 10 N3 A DC 6 ? ? C4 A DC 6 ? ? N4 A DC 6 ? ? 112.51 118.00 -5.49 0.70 N 111 10 C5 A DC 6 ? ? C4 A DC 6 ? ? N4 A DC 6 ? ? 124.42 120.20 4.22 0.70 N 112 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.47 108.30 3.17 0.30 N 113 10 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.84 122.90 -4.06 0.60 N 114 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.24 108.30 2.94 0.30 N 115 11 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.85 108.30 4.55 0.30 N 116 11 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.61 108.30 2.31 0.30 N 117 11 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.87 108.30 3.57 0.30 N 118 11 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.36 108.30 4.06 0.30 N 119 11 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.85 118.90 3.95 0.60 N 120 11 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.59 121.90 -4.31 0.70 N 121 11 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 114.24 108.30 5.94 0.30 N 122 11 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.30 121.90 -4.60 0.70 N 123 11 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.18 122.90 -3.72 0.60 N 124 11 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.46 108.30 5.16 0.30 N 125 11 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 116.26 119.90 -3.64 0.60 N 126 12 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.20 108.30 3.90 0.30 N 127 12 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.73 108.30 5.43 0.30 N 128 12 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.26 121.90 -4.64 0.70 N 129 12 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.74 108.30 3.44 0.30 N 130 12 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.29 122.90 -3.61 0.60 N 131 12 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.87 108.30 2.57 0.30 N 132 12 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 116.28 119.90 -3.62 0.60 N 133 12 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.98 108.30 3.68 0.30 N 134 12 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.61 108.30 5.31 0.30 N 135 12 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.72 118.90 3.82 0.60 N 136 12 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.52 121.90 -5.38 0.70 N 137 12 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.64 108.30 5.34 0.30 N 138 12 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.84 122.90 -4.06 0.60 N 139 12 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.31 108.30 4.01 0.30 N 140 13 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 116.14 108.30 7.84 0.30 N 141 13 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DT 3 ? ? 127.93 119.70 8.23 1.20 Y 142 13 "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? 109.67 106.00 3.67 0.60 N 143 13 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.63 108.30 3.33 0.30 N 144 13 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.25 122.90 -3.65 0.60 N 145 13 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.49 108.30 4.19 0.30 N 146 13 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.51 118.90 3.61 0.60 N 147 13 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.20 121.90 -4.70 0.70 N 148 13 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 126.92 119.70 7.22 1.20 Y 149 13 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.56 108.30 4.26 0.30 N 150 13 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.94 122.90 -3.96 0.60 N 151 13 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.39 108.30 2.09 0.30 N 152 14 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.96 108.30 2.66 0.30 N 153 14 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.04 108.30 4.74 0.30 N 154 14 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.54 121.90 -5.36 0.70 N 155 14 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.67 108.30 2.37 0.30 N 156 14 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.59 108.30 3.29 0.30 N 157 14 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.64 108.30 4.34 0.30 N 158 14 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 115.92 108.30 7.62 0.30 N 159 14 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.43 121.90 -4.47 0.70 N 160 14 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 127.30 119.70 7.60 1.20 Y 161 14 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.32 108.30 5.02 0.30 N 162 14 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.63 122.90 -4.27 0.60 N 163 14 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.88 108.30 4.58 0.30 N 164 15 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.21 108.30 2.91 0.30 N 165 15 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.21 108.30 3.91 0.30 N 166 15 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.57 118.90 3.67 0.60 N 167 15 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.29 121.90 -4.61 0.70 N 168 15 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.92 108.30 2.62 0.30 N 169 15 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.15 122.90 -3.75 0.60 N 170 15 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.64 108.30 4.34 0.30 N 171 15 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 115.78 108.30 7.48 0.30 N 172 15 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 127.35 119.70 7.65 1.20 Y 173 15 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.04 108.30 2.74 0.30 N 174 15 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 114.93 108.30 6.63 0.30 N 175 15 N3 A DG 8 ? ? C2 A DG 8 ? ? N2 A DG 8 ? ? 115.59 119.90 -4.31 0.70 N 176 16 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.38 108.30 6.08 0.30 N 177 16 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.61 108.30 4.31 0.30 N 178 16 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.48 121.90 -5.42 0.70 N 179 16 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.96 108.30 3.66 0.30 N 180 16 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.32 108.30 4.02 0.30 N 181 16 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.77 108.30 5.47 0.30 N 182 16 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 123.83 118.90 4.93 0.60 N 183 16 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 115.55 121.90 -6.35 0.70 N 184 16 N3 A DC 6 ? ? C4 A DC 6 ? ? N4 A DC 6 ? ? 113.32 118.00 -4.68 0.70 N 185 16 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.67 108.30 4.37 0.30 N 186 16 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.14 122.90 -3.76 0.60 N 187 16 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.67 108.30 5.37 0.30 N 188 17 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.54 108.30 4.24 0.30 N 189 17 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.79 108.30 4.49 0.30 N 190 17 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.68 121.90 -5.22 0.70 N 191 17 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.67 108.30 3.37 0.30 N 192 17 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.98 108.30 3.68 0.30 N 193 17 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 114.69 108.30 6.39 0.30 N 194 17 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.71 118.90 3.81 0.60 N 195 17 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.12 121.90 -4.78 0.70 N 196 17 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.28 108.30 1.98 0.30 N 197 17 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.81 122.90 -4.09 0.60 N 198 17 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.50 108.30 3.20 0.30 N 199 18 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.00 108.30 3.70 0.30 N 200 18 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.40 108.30 4.10 0.30 N 201 18 "C5'" A DT 3 ? ? "C4'" A DT 3 ? ? "O4'" A DT 3 ? ? 116.69 109.80 6.89 1.10 N 202 18 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.24 122.90 -3.66 0.60 N 203 18 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.50 108.30 3.20 0.30 N 204 18 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.95 108.30 2.65 0.30 N 205 18 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.13 108.30 4.83 0.30 N 206 18 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 114.77 108.30 6.47 0.30 N 207 18 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.31 122.90 -4.59 0.60 N 208 19 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.84 108.30 3.54 0.30 N 209 19 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.84 108.30 3.54 0.30 N 210 19 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.54 121.90 -4.36 0.70 N 211 19 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.33 108.30 3.03 0.30 N 212 19 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.23 122.90 -3.67 0.60 N 213 19 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.68 108.30 4.38 0.30 N 214 19 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.78 118.90 3.88 0.60 N 215 19 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 114.33 108.30 6.03 0.30 N 216 19 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.14 121.90 -4.76 0.70 N 217 19 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.06 122.90 -3.84 0.60 N 218 19 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.08 108.30 4.78 0.30 N 219 20 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.03 108.30 3.73 0.30 N 220 20 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.69 108.30 4.39 0.30 N 221 20 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 116.07 119.90 -3.83 0.60 N 222 20 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.87 108.30 4.57 0.30 N 223 20 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 122.67 118.90 3.77 0.60 N 224 20 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.30 108.30 4.00 0.30 N 225 20 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.49 121.90 -4.41 0.70 N 226 20 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.99 108.30 3.69 0.30 N 227 20 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.75 122.90 -4.15 0.60 N 228 20 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.97 108.30 3.67 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 4 ? ? 0.107 'SIDE CHAIN' 2 1 DC A 6 ? ? 0.136 'SIDE CHAIN' 3 1 DT A 7 ? ? 0.141 'SIDE CHAIN' 4 1 DG A 8 ? ? 0.069 'SIDE CHAIN' 5 2 DC A 1 ? ? 0.078 'SIDE CHAIN' 6 2 DG A 4 ? ? 0.109 'SIDE CHAIN' 7 2 DC A 5 ? ? 0.111 'SIDE CHAIN' 8 2 DT A 7 ? ? 0.146 'SIDE CHAIN' 9 3 DC A 2 ? ? 0.138 'SIDE CHAIN' 10 3 DT A 3 ? ? 0.097 'SIDE CHAIN' 11 3 DG A 4 ? ? 0.097 'SIDE CHAIN' 12 3 DC A 6 ? ? 0.182 'SIDE CHAIN' 13 3 DT A 7 ? ? 0.143 'SIDE CHAIN' 14 3 DG A 8 ? ? 0.071 'SIDE CHAIN' 15 4 DC A 1 ? ? 0.101 'SIDE CHAIN' 16 4 DG A 4 ? ? 0.107 'SIDE CHAIN' 17 4 DC A 5 ? ? 0.083 'SIDE CHAIN' 18 4 DT A 7 ? ? 0.159 'SIDE CHAIN' 19 4 DG A 8 ? ? 0.069 'SIDE CHAIN' 20 5 DG A 4 ? ? 0.142 'SIDE CHAIN' 21 5 DC A 5 ? ? 0.097 'SIDE CHAIN' 22 5 DC A 6 ? ? 0.083 'SIDE CHAIN' 23 5 DT A 7 ? ? 0.112 'SIDE CHAIN' 24 6 DG A 4 ? ? 0.103 'SIDE CHAIN' 25 6 DC A 5 ? ? 0.092 'SIDE CHAIN' 26 6 DT A 7 ? ? 0.069 'SIDE CHAIN' 27 7 DC A 1 ? ? 0.108 'SIDE CHAIN' 28 7 DG A 4 ? ? 0.100 'SIDE CHAIN' 29 7 DC A 5 ? ? 0.103 'SIDE CHAIN' 30 7 DT A 7 ? ? 0.214 'SIDE CHAIN' 31 7 DG A 8 ? ? 0.113 'SIDE CHAIN' 32 8 DC A 1 ? ? 0.119 'SIDE CHAIN' 33 8 DG A 4 ? ? 0.100 'SIDE CHAIN' 34 8 DC A 5 ? ? 0.062 'SIDE CHAIN' 35 8 DC A 6 ? ? 0.073 'SIDE CHAIN' 36 8 DT A 7 ? ? 0.111 'SIDE CHAIN' 37 8 DG A 8 ? ? 0.144 'SIDE CHAIN' 38 9 DG A 4 ? ? 0.096 'SIDE CHAIN' 39 9 DC A 5 ? ? 0.096 'SIDE CHAIN' 40 9 DT A 7 ? ? 0.120 'SIDE CHAIN' 41 10 DC A 2 ? ? 0.136 'SIDE CHAIN' 42 10 DG A 4 ? ? 0.141 'SIDE CHAIN' 43 10 DC A 5 ? ? 0.102 'SIDE CHAIN' 44 10 DT A 7 ? ? 0.153 'SIDE CHAIN' 45 11 DG A 4 ? ? 0.067 'SIDE CHAIN' 46 11 DC A 6 ? ? 0.150 'SIDE CHAIN' 47 11 DT A 7 ? ? 0.189 'SIDE CHAIN' 48 12 DC A 1 ? ? 0.074 'SIDE CHAIN' 49 12 DG A 4 ? ? 0.101 'SIDE CHAIN' 50 12 DC A 5 ? ? 0.120 'SIDE CHAIN' 51 12 DT A 7 ? ? 0.148 'SIDE CHAIN' 52 13 DC A 1 ? ? 0.064 'SIDE CHAIN' 53 13 DC A 2 ? ? 0.086 'SIDE CHAIN' 54 13 DG A 4 ? ? 0.087 'SIDE CHAIN' 55 13 DC A 5 ? ? 0.090 'SIDE CHAIN' 56 13 DT A 7 ? ? 0.144 'SIDE CHAIN' 57 14 DC A 2 ? ? 0.061 'SIDE CHAIN' 58 14 DG A 4 ? ? 0.087 'SIDE CHAIN' 59 14 DC A 5 ? ? 0.092 'SIDE CHAIN' 60 14 DT A 7 ? ? 0.160 'SIDE CHAIN' 61 14 DG A 8 ? ? 0.089 'SIDE CHAIN' 62 15 DC A 1 ? ? 0.144 'SIDE CHAIN' 63 15 DC A 2 ? ? 0.106 'SIDE CHAIN' 64 15 DG A 4 ? ? 0.072 'SIDE CHAIN' 65 15 DT A 7 ? ? 0.167 'SIDE CHAIN' 66 15 DG A 8 ? ? 0.110 'SIDE CHAIN' 67 16 DC A 1 ? ? 0.132 'SIDE CHAIN' 68 16 DC A 2 ? ? 0.083 'SIDE CHAIN' 69 16 DC A 5 ? ? 0.078 'SIDE CHAIN' 70 16 DC A 6 ? ? 0.061 'SIDE CHAIN' 71 16 DT A 7 ? ? 0.117 'SIDE CHAIN' 72 16 DG A 8 ? ? 0.114 'SIDE CHAIN' 73 17 DC A 1 ? ? 0.102 'SIDE CHAIN' 74 17 DG A 4 ? ? 0.132 'SIDE CHAIN' 75 17 DC A 5 ? ? 0.098 'SIDE CHAIN' 76 17 DT A 7 ? ? 0.184 'SIDE CHAIN' 77 17 DG A 8 ? ? 0.088 'SIDE CHAIN' 78 18 DG A 4 ? ? 0.100 'SIDE CHAIN' 79 18 DC A 5 ? ? 0.091 'SIDE CHAIN' 80 18 DC A 6 ? ? 0.139 'SIDE CHAIN' 81 18 DG A 8 ? ? 0.082 'SIDE CHAIN' 82 19 DG A 4 ? ? 0.081 'SIDE CHAIN' 83 19 DC A 6 ? ? 0.155 'SIDE CHAIN' 84 19 DT A 7 ? ? 0.188 'SIDE CHAIN' 85 20 DG A 4 ? ? 0.116 'SIDE CHAIN' 86 20 DC A 5 ? ? 0.066 'SIDE CHAIN' 87 20 DC A 6 ? ? 0.111 'SIDE CHAIN' 88 20 DT A 7 ? ? 0.143 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 5GWL _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5GWL _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.0mM DNA (5'-D(*CP*CP*TP*GP*CP*CP*TP*G)-3'), 10mM sodium phosphate, 0.1mM DSS, 100% D2O ; _pdbx_nmr_sample_details.solvent_system '100% D2O' _pdbx_nmr_sample_details.label 1H _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*CP*CP*TP*GP*CP*CP*TP*G)-3') ; 1.0 ? mM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 DSS 0.1 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.02 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units M _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 1 isotropic 2 1 1 '2D DQF-COSY' 2 isotropic # _pdbx_nmr_refine.entry_id 5GWL _pdbx_nmr_refine.method 'restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing TopSpin ? 'Bruker Biospin' 2 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DT OP3 O N N 72 DT P P N N 73 DT OP1 O N N 74 DT OP2 O N N 75 DT "O5'" O N N 76 DT "C5'" C N N 77 DT "C4'" C N R 78 DT "O4'" O N N 79 DT "C3'" C N S 80 DT "O3'" O N N 81 DT "C2'" C N N 82 DT "C1'" C N R 83 DT N1 N N N 84 DT C2 C N N 85 DT O2 O N N 86 DT N3 N N N 87 DT C4 C N N 88 DT O4 O N N 89 DT C5 C N N 90 DT C7 C N N 91 DT C6 C N N 92 DT HOP3 H N N 93 DT HOP2 H N N 94 DT "H5'" H N N 95 DT "H5''" H N N 96 DT "H4'" H N N 97 DT "H3'" H N N 98 DT "HO3'" H N N 99 DT "H2'" H N N 100 DT "H2''" H N N 101 DT "H1'" H N N 102 DT H3 H N N 103 DT H71 H N N 104 DT H72 H N N 105 DT H73 H N N 106 DT H6 H N N 107 NA NA NA N N 108 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DT OP3 P sing N N 75 DT OP3 HOP3 sing N N 76 DT P OP1 doub N N 77 DT P OP2 sing N N 78 DT P "O5'" sing N N 79 DT OP2 HOP2 sing N N 80 DT "O5'" "C5'" sing N N 81 DT "C5'" "C4'" sing N N 82 DT "C5'" "H5'" sing N N 83 DT "C5'" "H5''" sing N N 84 DT "C4'" "O4'" sing N N 85 DT "C4'" "C3'" sing N N 86 DT "C4'" "H4'" sing N N 87 DT "O4'" "C1'" sing N N 88 DT "C3'" "O3'" sing N N 89 DT "C3'" "C2'" sing N N 90 DT "C3'" "H3'" sing N N 91 DT "O3'" "HO3'" sing N N 92 DT "C2'" "C1'" sing N N 93 DT "C2'" "H2'" sing N N 94 DT "C2'" "H2''" sing N N 95 DT "C1'" N1 sing N N 96 DT "C1'" "H1'" sing N N 97 DT N1 C2 sing N N 98 DT N1 C6 sing N N 99 DT C2 O2 doub N N 100 DT C2 N3 sing N N 101 DT N3 C4 sing N N 102 DT N3 H3 sing N N 103 DT C4 O4 doub N N 104 DT C4 C5 sing N N 105 DT C5 C7 sing N N 106 DT C5 C6 doub N N 107 DT C7 H71 sing N N 108 DT C7 H72 sing N N 109 DT C7 H73 sing N N 110 DT C6 H6 sing N N 111 # _ndb_struct_conf_na.entry_id 5GWL _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 4 1_555 0.365 -0.183 -0.347 8.104 26.453 1.896 1 A_DC1:DG4_A A 1 ? A 4 ? 19 1 1 A DG 8 1_555 A DC 5 1_555 -0.706 -0.427 -0.309 4.712 26.883 -3.392 2 A_DG8:DC5_A A 8 ? A 5 ? 19 1 1 A DC 2 1_555 A DC 6 1_555 -0.767 -2.700 0.524 1.654 29.638 -138.788 3 A_DC2:DC6_A A 2 ? A 6 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 4 1_555 A DG 8 1_555 A DC 5 1_555 0.004 0.470 -3.417 0.925 3.144 -8.651 4.446 -2.141 -3.356 -19.925 5.864 -9.250 1 AA_DC1DG8:DC5DG4_AA A 1 ? A 4 ? A 8 ? A 5 ? 1 A DG 8 1_555 A DC 5 1_555 A DC 2 1_555 A DC 6 1_555 -0.036 4.013 -3.608 73.164 36.710 148.100 2.196 -0.271 -3.221 18.856 -37.579 156.034 2 AA_DG8DC2:DC6DC5_AA A 8 ? A 5 ? A 2 ? A 6 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 700 ? 2 'AVANCE II' ? Bruker 500 ? # _atom_sites.entry_id 5GWL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NA O P # loop_