HEADER TRANSPORT PROTEIN 16-SEP-16 5GXB TITLE CRYSTAL STRUCTURE OF A LACY/NANOBODY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOSE PERMEASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LACTOSE-PROTON SYMPORT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NANOBODY; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: LACY, B0343, JW0334; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 10 ORGANISM_TAXID: 30538; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.JIANG,J.P.WU,N.YAN,H.R.KABACK REVDAT 6 12-OCT-22 5GXB 1 REMARK REVDAT 5 27-NOV-19 5GXB 1 REMARK REVDAT 4 17-APR-19 5GXB 1 REMARK REVDAT 3 20-SEP-17 5GXB 1 JRNL REMARK REVDAT 2 09-NOV-16 5GXB 1 JRNL REVDAT 1 26-OCT-16 5GXB 0 JRNL AUTH X.JIANG,I.SMIRNOVA,V.KASHO,J.WU,K.HIRATA,M.KE,E.PARDON, JRNL AUTH 2 J.STEYAERT,N.YAN,H.R.KABACK JRNL TITL CRYSTAL STRUCTURE OF A LACY-NANOBODY COMPLEX IN A JRNL TITL 2 PERIPLASMIC-OPEN CONFORMATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 12420 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27791182 JRNL DOI 10.1073/PNAS.1615414113 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2405: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 10364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.340 REMARK 3 R VALUE (WORKING SET) : 0.340 REMARK 3 FREE R VALUE : 0.347 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3468 - 5.2368 0.96 2618 147 0.3201 0.3288 REMARK 3 2 5.2368 - 4.1573 0.98 2529 119 0.3300 0.3429 REMARK 3 3 4.1573 - 3.6320 0.98 2483 119 0.3626 0.3623 REMARK 3 4 3.6320 - 3.3000 0.89 2221 128 0.3951 0.3852 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4242 REMARK 3 ANGLE : 1.844 5747 REMARK 3 CHIRALITY : 0.117 631 REMARK 3 PLANARITY : 0.007 708 REMARK 3 DIHEDRAL : 19.997 1442 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -19.0104 -19.8168 36.5466 REMARK 3 T TENSOR REMARK 3 T11: 0.6512 T22: 0.6581 REMARK 3 T33: 0.7028 T12: -0.0091 REMARK 3 T13: 0.0474 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.8694 L22: 0.6132 REMARK 3 L33: 1.1048 L12: -0.6179 REMARK 3 L13: 0.2841 L23: -0.1749 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: -0.0854 S13: -0.1407 REMARK 3 S21: 0.0341 S22: 0.1813 S23: 0.0485 REMARK 3 S31: -0.1055 S32: -0.0494 S33: -0.1399 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10364 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.342 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 29.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 15.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH 6.0, 100MM (NH4)2C4H4O6, REMARK 280 43% PEG 400, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.27150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.27150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.27150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.27150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.27150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.27150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.27150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.27150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 TYR A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 191 REMARK 465 PRO A 192 REMARK 465 SER A 193 REMARK 465 SER A 194 REMARK 465 ALA A 195 REMARK 465 THR A 196 REMARK 465 VAL A 197 REMARK 465 ALA A 198 REMARK 465 ASN A 199 REMARK 465 ALA A 200 REMARK 465 VAL A 201 REMARK 465 GLY A 202 REMARK 465 ALA A 203 REMARK 465 ASN A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 409 REMARK 465 ARG A 410 REMARK 465 ARG A 411 REMARK 465 GLN A 412 REMARK 465 VAL A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 VAL A 416 REMARK 465 ALA A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 465 GLU B 136 REMARK 465 PRO B 137 REMARK 465 GLU B 138 REMARK 465 ALA B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 22 SG CYS B 96 1.42 REMARK 500 O ILE A 317 CG2 THR A 320 1.75 REMARK 500 O VAL A 158 CB PHE A 162 1.85 REMARK 500 O LYS B 76 OG1 THR B 78 1.86 REMARK 500 O LYS B 87 CG1 VAL B 127 1.90 REMARK 500 O LEU A 114 N PHE A 116 1.90 REMARK 500 O MET A 83 OH TYR A 113 1.93 REMARK 500 OE1 GLN B 82 ND2 ASN B 84 1.96 REMARK 500 O ILE A 282 CG2 ILE A 286 1.97 REMARK 500 O PRO B 41 N LYS B 43 1.98 REMARK 500 N GLN B 1 OH TYR B 118 2.00 REMARK 500 O ILE A 48 CD1 ILE A 52 2.04 REMARK 500 O ALA A 312 N VAL A 315 2.06 REMARK 500 O ALA A 312 N GLU A 314 2.06 REMARK 500 CD1 ILE A 286 CB ASN A 290 2.08 REMARK 500 O ASN B 74 N LYS B 76 2.11 REMARK 500 CE MET B 0 CD ARG B 101 2.14 REMARK 500 O ASP B 62 N VAL B 64 2.14 REMARK 500 O MET A 372 N ILE A 376 2.15 REMARK 500 NH2 ARG B 38 OE1 GLU B 46 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HIS A 39 NE2 HIS B 130 7556 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 398 C THR A 399 N 0.207 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 28 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 PHE A 87 CB - CA - C ANGL. DEV. = 21.8 DEGREES REMARK 500 PRO A 89 C - N - CD ANGL. DEV. = 14.0 DEGREES REMARK 500 PRO A 89 CB - CA - C ANGL. DEV. = 15.5 DEGREES REMARK 500 ILE A 92 CB - CA - C ANGL. DEV. = 25.2 DEGREES REMARK 500 PHE A 93 CB - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 PRO A 97 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 SER A 156 CA - C - N ANGL. DEV. = 15.6 DEGREES REMARK 500 SER A 156 O - C - N ANGL. DEV. = -19.1 DEGREES REMARK 500 ILE A 157 C - N - CA ANGL. DEV. = 18.7 DEGREES REMARK 500 PHE A 170 CB - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 PRO A 327 C - N - CD ANGL. DEV. = 12.6 DEGREES REMARK 500 CYS B 22 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 39 8.94 42.16 REMARK 500 LYS A 42 -8.29 -55.72 REMARK 500 ILE A 94 -71.84 -134.63 REMARK 500 VAL A 105 -25.07 -39.65 REMARK 500 TYR A 113 -75.48 -36.79 REMARK 500 LEU A 114 -77.66 -44.47 REMARK 500 ASN A 137 63.01 -112.95 REMARK 500 ALA A 143 -34.95 79.74 REMARK 500 PHE A 162 -7.73 -53.94 REMARK 500 ILE A 164 -22.76 -154.10 REMARK 500 ASN A 165 62.22 -171.30 REMARK 500 ASN A 166 56.12 -69.22 REMARK 500 GLN A 167 -17.64 -149.74 REMARK 500 PHE A 208 -164.54 -113.37 REMARK 500 ASP A 240 22.51 -54.85 REMARK 500 ALA A 252 -87.25 -45.21 REMARK 500 PHE A 308 78.07 -100.77 REMARK 500 LEU A 313 -7.73 -39.18 REMARK 500 PHE A 345 16.86 -153.42 REMARK 500 CYS A 355 -61.53 -132.61 REMARK 500 PHE A 378 -77.10 -91.42 REMARK 500 GLN A 379 -53.72 -28.78 REMARK 500 GLN B 1 85.62 35.85 REMARK 500 ARG B 10 179.76 170.65 REMARK 500 ARG B 27 141.00 -4.96 REMARK 500 THR B 28 45.28 163.24 REMARK 500 PHE B 29 -50.22 178.23 REMARK 500 THR B 30 -105.20 -67.65 REMARK 500 THR B 31 119.99 -14.83 REMARK 500 ALA B 40 -133.56 -102.56 REMARK 500 PRO B 41 -140.70 -113.80 REMARK 500 LYS B 43 -167.54 -122.51 REMARK 500 GLU B 44 -166.92 -101.99 REMARK 500 TRP B 53 -83.14 -34.15 REMARK 500 SER B 54 101.82 -46.09 REMARK 500 ASP B 62 -63.10 -23.45 REMARK 500 SER B 63 9.63 -42.82 REMARK 500 VAL B 64 -4.99 -154.49 REMARK 500 LYS B 65 151.66 -45.35 REMARK 500 ASP B 73 93.30 -163.49 REMARK 500 ASN B 74 -72.99 -49.10 REMARK 500 ALA B 75 -36.11 0.10 REMARK 500 ASN B 77 61.66 25.54 REMARK 500 LYS B 87 -157.60 -137.84 REMARK 500 ALA B 92 155.31 169.31 REMARK 500 ALA B 100 -57.97 -174.94 REMARK 500 PRO B 102 -146.26 -87.74 REMARK 500 SER B 103 122.79 159.74 REMARK 500 SER B 105 -137.24 158.25 REMARK 500 ASP B 107 144.33 50.12 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 87 ALA A 88 -148.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 156 -13.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 5GXB A 1 417 UNP P02920 LACY_ECOLI 1 417 DBREF 5GXB B 0 139 PDB 5GXB 5GXB 0 139 SEQADV 5GXB TRP A 46 UNP P02920 GLY 46 CONFLICT SEQADV 5GXB TRP A 262 UNP P02920 GLY 262 CONFLICT SEQADV 5GXB HIS A 418 UNP P02920 EXPRESSION TAG SEQADV 5GXB HIS A 419 UNP P02920 EXPRESSION TAG SEQADV 5GXB HIS A 420 UNP P02920 EXPRESSION TAG SEQADV 5GXB HIS A 421 UNP P02920 EXPRESSION TAG SEQADV 5GXB HIS A 422 UNP P02920 EXPRESSION TAG SEQADV 5GXB HIS A 423 UNP P02920 EXPRESSION TAG SEQRES 1 A 423 MET TYR TYR LEU LYS ASN THR ASN PHE TRP MET PHE GLY SEQRES 2 A 423 LEU PHE PHE PHE PHE TYR PHE PHE ILE MET GLY ALA TYR SEQRES 3 A 423 PHE PRO PHE PHE PRO ILE TRP LEU HIS ASP ILE ASN HIS SEQRES 4 A 423 ILE SER LYS SER ASP THR TRP ILE ILE PHE ALA ALA ILE SEQRES 5 A 423 SER LEU PHE SER LEU LEU PHE GLN PRO LEU PHE GLY LEU SEQRES 6 A 423 LEU SER ASP LYS LEU GLY LEU ARG LYS TYR LEU LEU TRP SEQRES 7 A 423 ILE ILE THR GLY MET LEU VAL MET PHE ALA PRO PHE PHE SEQRES 8 A 423 ILE PHE ILE PHE GLY PRO LEU LEU GLN TYR ASN ILE LEU SEQRES 9 A 423 VAL GLY SER ILE VAL GLY GLY ILE TYR LEU GLY PHE CYS SEQRES 10 A 423 PHE ASN ALA GLY ALA PRO ALA VAL GLU ALA PHE ILE GLU SEQRES 11 A 423 LYS VAL SER ARG ARG SER ASN PHE GLU PHE GLY ARG ALA SEQRES 12 A 423 ARG MET PHE GLY CYS VAL GLY TRP ALA LEU CYS ALA SER SEQRES 13 A 423 ILE VAL GLY ILE MET PHE THR ILE ASN ASN GLN PHE VAL SEQRES 14 A 423 PHE TRP LEU GLY SER GLY CYS ALA LEU ILE LEU ALA VAL SEQRES 15 A 423 LEU LEU PHE PHE ALA LYS THR ASP ALA PRO SER SER ALA SEQRES 16 A 423 THR VAL ALA ASN ALA VAL GLY ALA ASN HIS SER ALA PHE SEQRES 17 A 423 SER LEU LYS LEU ALA LEU GLU LEU PHE ARG GLN PRO LYS SEQRES 18 A 423 LEU TRP PHE LEU SER LEU TYR VAL ILE GLY VAL SER CYS SEQRES 19 A 423 THR TYR ASP VAL PHE ASP GLN GLN PHE ALA ASN PHE PHE SEQRES 20 A 423 THR SER PHE PHE ALA THR GLY GLU GLN GLY THR ARG VAL SEQRES 21 A 423 PHE TRP TYR VAL THR THR MET GLY GLU LEU LEU ASN ALA SEQRES 22 A 423 SER ILE MET PHE PHE ALA PRO LEU ILE ILE ASN ARG ILE SEQRES 23 A 423 GLY GLY LYS ASN ALA LEU LEU LEU ALA GLY THR ILE MET SEQRES 24 A 423 SER VAL ARG ILE ILE GLY SER SER PHE ALA THR SER ALA SEQRES 25 A 423 LEU GLU VAL VAL ILE LEU LYS THR LEU HIS MET PHE GLU SEQRES 26 A 423 VAL PRO PHE LEU LEU VAL GLY CYS PHE LYS TYR ILE THR SEQRES 27 A 423 SER GLN PHE GLU VAL ARG PHE SER ALA THR ILE TYR LEU SEQRES 28 A 423 VAL CYS PHE CYS PHE PHE LYS GLN LEU ALA MET ILE PHE SEQRES 29 A 423 MET SER VAL LEU ALA GLY ASN MET TYR GLU SER ILE GLY SEQRES 30 A 423 PHE GLN GLY ALA TYR LEU VAL LEU GLY LEU VAL ALA LEU SEQRES 31 A 423 GLY PHE THR LEU ILE SER VAL PHE THR LEU SER GLY PRO SEQRES 32 A 423 GLY PRO LEU SER LEU LEU ARG ARG GLN VAL ASN GLU VAL SEQRES 33 A 423 ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 140 MET GLN VAL GLN LEU VAL GLU SER GLY GLY ARG LEU VAL SEQRES 2 B 140 GLN ALA GLY ASP SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 B 140 GLY ARG THR PHE THR THR TYR LEU MET GLY TRP PHE ARG SEQRES 4 B 140 GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE SEQRES 5 B 140 ARG TRP SER GLY GLY SER THR TYR TYR ALA ASP SER VAL SEQRES 6 B 140 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 B 140 THR VAL TYR LEU GLN MET ASN SER LEU LYS LEU GLU ASP SEQRES 8 B 140 THR ALA VAL TYR TYR CYS ALA ALA ALA ALA ARG PRO SER SEQRES 9 B 140 TYR SER GLY ASP TYR GLY TYR THR GLU ALA LEU ARG TYR SEQRES 10 B 140 ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 11 B 140 HIS HIS HIS HIS HIS HIS GLU PRO GLU ALA HELIX 1 AA1 ASN A 6 PHE A 27 1 22 HELIX 2 AA2 PHE A 29 ASP A 36 1 8 HELIX 3 AA3 ASP A 44 LEU A 70 1 27 HELIX 4 AA4 LYS A 74 LEU A 84 1 11 HELIX 5 AA5 MET A 86 ILE A 94 1 9 HELIX 6 AA6 ILE A 103 GLY A 111 1 9 HELIX 7 AA7 GLY A 111 PHE A 118 1 8 HELIX 8 AA8 GLY A 121 SER A 133 1 13 HELIX 9 AA9 PHE A 140 MET A 161 1 22 HELIX 10 AB1 PHE A 162 ILE A 164 5 3 HELIX 11 AB2 GLN A 167 ALA A 187 1 21 HELIX 12 AB3 SER A 209 LEU A 214 1 6 HELIX 13 AB4 GLU A 215 ARG A 218 5 4 HELIX 14 AB5 GLN A 219 ASP A 240 1 22 HELIX 15 AB6 GLN A 242 THR A 248 1 7 HELIX 16 AB7 SER A 249 PHE A 251 5 3 HELIX 17 AB8 THR A 253 GLY A 287 1 35 HELIX 18 AB9 GLY A 287 SER A 306 1 20 HELIX 19 AC1 SER A 311 PHE A 341 1 31 HELIX 20 AC2 GLU A 342 ARG A 344 5 3 HELIX 21 AC3 PHE A 345 PHE A 354 1 10 HELIX 22 AC4 CYS A 355 ILE A 363 1 9 HELIX 23 AC5 ILE A 363 GLY A 377 1 15 HELIX 24 AC6 PHE A 378 SER A 396 1 19 HELIX 25 AC7 ASP B 62 LYS B 65 5 4 HELIX 26 AC8 ASN B 74 LYS B 76 5 3 HELIX 27 AC9 GLU B 112 TYR B 116 5 5 SHEET 1 AA1 4 LEU B 4 SER B 7 0 SHEET 2 AA1 4 LEU B 18 ALA B 24 -1 O ALA B 23 N VAL B 5 SHEET 3 AA1 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA1 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AA2 2 LEU B 11 VAL B 12 0 SHEET 2 AA2 2 THR B 126 VAL B 127 1 O THR B 126 N VAL B 12 SHEET 1 AA3 5 THR B 58 TYR B 60 0 SHEET 2 AA3 5 ARG B 45 ILE B 51 -1 N ALA B 50 O TYR B 59 SHEET 3 AA3 5 MET B 34 GLN B 39 -1 N MET B 34 O ILE B 51 SHEET 4 AA3 5 VAL B 93 ALA B 98 -1 O TYR B 95 N PHE B 37 SHEET 5 AA3 5 TYR B 118 TRP B 119 -1 O TYR B 118 N ALA B 98 CRYST1 96.543 96.543 145.025 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006895 0.00000