HEADER IMMUNE SYSTEM 21-SEP-16 5GY2 TITLE CRYSTAL STRUCTURE OF A COMPLEX BETWEEN BACILLUS SUBTILIS FLAGELLIN AND TITLE 2 ZEBRAFISH TOLL-LIKE RECEPTOR 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TLR5B PROTEIN,VARIABLE LYMPHOCYTE RECEPTOR B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TOLL-LIKE RECEPTOR 5B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: FUSION PROTEIN OF TLR5B (B3DIN1, UNP RESIDUES 23-390) COMPND 8 AND VARIABLE LYMPHOCYTE RECEPTOR B (Q4G1L2, UNP RESIDUES 126-200); COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: FLAGELLIN; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 54-230; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO, EPTATRETUS BURGERI; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH, INSHORE HAGFISH; SOURCE 4 ORGANISM_TAXID: 7955, 7764; SOURCE 5 GENE: TLR5B, VLRB; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SPIZIZENII STRAIN W23; SOURCE 11 ORGANISM_TAXID: 655816; SOURCE 12 STRAIN: W23; SOURCE 13 GENE: HAG, BSUW23_17335; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BACTERIAL PROTEIN IMMUNE RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.S.SONG,S.I.YOON REVDAT 4 06-NOV-24 5GY2 1 REMARK REVDAT 3 08-NOV-23 5GY2 1 HETSYN REVDAT 2 29-JUL-20 5GY2 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 15-FEB-17 5GY2 0 JRNL AUTH W.S.SONG,Y.J.JEON,B.NAMGUNG,M.HONG,S.I.YOON JRNL TITL A CONSERVED TLR5 BINDING AND ACTIVATION HOT SPOT ON JRNL TITL 2 FLAGELLIN JRNL REF SCI REP V. 7 40878 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28106112 JRNL DOI 10.1038/SREP40878 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 75311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3987 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5416 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 254 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 166 REMARK 3 SOLVENT ATOMS : 465 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.227 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9880 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6525 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13401 ; 1.507 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16025 ; 4.280 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1255 ; 5.946 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 448 ;38.542 ;25.759 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1720 ;14.559 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;22.421 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1569 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10991 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1875 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6103 ; 0.710 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2516 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9818 ; 1.371 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3777 ; 2.640 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3565 ; 4.461 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 15 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 25 A 46 3 REMARK 3 1 B 25 B 46 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 128 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 A (A): 145 ; 0.030 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 128 ; 0.150 ; 0.500 REMARK 3 LOOSE THERMAL 1 A (A**2): 145 ; 0.160 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 351 A 357 3 REMARK 3 1 B 351 B 357 3 REMARK 3 2 A 365 A 381 3 REMARK 3 2 B 365 B 381 3 REMARK 3 3 A 383 A 400 3 REMARK 3 3 B 383 B 400 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 248 ; 0.060 ; 0.050 REMARK 3 LOOSE POSITIONAL 2 A (A): 297 ; 0.060 ; 5.000 REMARK 3 TIGHT THERMAL 2 A (A**2): 248 ; 0.210 ; 0.500 REMARK 3 LOOSE THERMAL 2 A (A**2): 297 ; 0.190 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 401 A 409 3 REMARK 3 1 B 401 B 409 3 REMARK 3 2 A 411 A 464 3 REMARK 3 2 B 411 B 464 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 367 ; 0.050 ; 0.050 REMARK 3 LOOSE POSITIONAL 3 A (A): 460 ; 0.050 ; 5.000 REMARK 3 TIGHT THERMAL 3 A (A**2): 367 ; 0.220 ; 0.500 REMARK 3 LOOSE THERMAL 3 A (A**2): 460 ; 0.210 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 54 C 141 3 REMARK 3 1 D 54 D 141 3 REMARK 3 2 C 145 C 222 3 REMARK 3 2 D 145 D 222 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 C (A): 973 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 4 C (A): 977 ; 0.050 ; 5.000 REMARK 3 TIGHT THERMAL 4 C (A**2): 973 ; 0.160 ; 0.500 REMARK 3 LOOSE THERMAL 4 C (A**2): 977 ; 0.170 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1101 A 1102 6 REMARK 3 1 B 1101 B 1102 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 5 A (A): 44 ; 0.490 ; 5.000 REMARK 3 LOOSE THERMAL 5 A (A**2): 44 ; 3.600 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 801 A 801 6 REMARK 3 1 B 801 B 801 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 6 A (A): 22 ; 0.240 ; 5.000 REMARK 3 LOOSE THERMAL 6 A (A**2): 22 ; 3.500 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 7 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 901 A 901 6 REMARK 3 1 B 901 B 901 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 7 A (A): 22 ; 0.230 ; 5.000 REMARK 3 LOOSE THERMAL 7 A (A**2): 22 ; 0.480 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 8 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 101 A 150 3 REMARK 3 1 B 101 B 150 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 8 A (A): 295 ; 0.030 ; 0.050 REMARK 3 LOOSE POSITIONAL 8 A (A): 340 ; 0.040 ; 5.000 REMARK 3 TIGHT THERMAL 8 A (A**2): 295 ; 0.160 ; 0.500 REMARK 3 LOOSE THERMAL 8 A (A**2): 340 ; 0.160 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 9 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 201 A 250 3 REMARK 3 1 B 201 B 250 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 9 A (A): 299 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 9 A (A): 409 ; 0.040 ; 5.000 REMARK 3 TIGHT THERMAL 9 A (A**2): 299 ; 0.200 ; 0.500 REMARK 3 LOOSE THERMAL 9 A (A**2): 409 ; 0.210 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 10 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 50 A 70 3 REMARK 3 1 B 50 B 70 3 REMARK 3 2 A 72 A 100 3 REMARK 3 2 B 72 B 100 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 10 A (A): 295 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 10 A (A): 346 ; 0.050 ; 5.000 REMARK 3 TIGHT THERMAL 10 A (A**2): 295 ; 0.170 ; 0.500 REMARK 3 LOOSE THERMAL 10 A (A**2): 346 ; 0.150 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 11 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 151 A 200 3 REMARK 3 1 B 151 B 200 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 11 A (A): 300 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 11 A (A): 425 ; 0.040 ; 5.000 REMARK 3 TIGHT THERMAL 11 A (A**2): 300 ; 0.170 ; 0.500 REMARK 3 LOOSE THERMAL 11 A (A**2): 425 ; 0.190 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 12 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 251 A 300 3 REMARK 3 1 B 251 B 300 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 12 A (A): 292 ; 0.050 ; 0.050 REMARK 3 LOOSE POSITIONAL 12 A (A): 325 ; 0.060 ; 5.000 REMARK 3 TIGHT THERMAL 12 A (A**2): 292 ; 0.200 ; 0.500 REMARK 3 LOOSE THERMAL 12 A (A**2): 325 ; 0.240 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 13 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 301 A 319 3 REMARK 3 1 B 301 B 319 3 REMARK 3 2 A 321 A 350 3 REMARK 3 2 B 321 B 350 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 13 A (A): 295 ; 0.060 ; 0.050 REMARK 3 LOOSE POSITIONAL 13 A (A): 375 ; 0.070 ; 5.000 REMARK 3 TIGHT THERMAL 13 A (A**2): 295 ; 0.190 ; 0.500 REMARK 3 LOOSE THERMAL 13 A (A**2): 375 ; 0.210 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 14 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1401 A 1401 6 REMARK 3 1 B 1401 B 1401 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 14 A (A): 30 ; 0.270 ; 5.000 REMARK 3 LOOSE THERMAL 14 A (A**2): 30 ; 2.140 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 15 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1001 A 1011 6 REMARK 3 1 B 1001 B 1011 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 15 A (A): 22 ; 0.060 ; 5.000 REMARK 3 LOOSE THERMAL 15 A (A**2): 22 ; 0.320 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 464 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9960 1.0540 57.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.3923 T22: 0.1133 REMARK 3 T33: 0.0178 T12: 0.0332 REMARK 3 T13: 0.0024 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.7260 L22: 0.4347 REMARK 3 L33: 0.6925 L12: 0.1538 REMARK 3 L13: -0.1938 L23: -0.0093 REMARK 3 S TENSOR REMARK 3 S11: 0.1085 S12: 0.0123 S13: 0.0555 REMARK 3 S21: -0.0753 S22: -0.0272 S23: 0.0062 REMARK 3 S31: -0.0523 S32: -0.0441 S33: -0.0814 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 464 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3690 -5.1540 20.1560 REMARK 3 T TENSOR REMARK 3 T11: 0.2870 T22: 0.2331 REMARK 3 T33: 0.0520 T12: -0.0148 REMARK 3 T13: 0.0578 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.9072 L22: 1.1961 REMARK 3 L33: 0.7078 L12: -0.3095 REMARK 3 L13: -0.0103 L23: 0.0690 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.0238 S13: 0.0470 REMARK 3 S21: 0.1772 S22: 0.0205 S23: 0.1791 REMARK 3 S31: 0.0168 S32: -0.0740 S33: -0.0253 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 54 C 222 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1120 -10.5230 71.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.4354 T22: 0.0829 REMARK 3 T33: 0.0489 T12: 0.0003 REMARK 3 T13: 0.0369 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.1750 L22: 1.2469 REMARK 3 L33: 3.0572 L12: 0.0311 REMARK 3 L13: -1.0723 L23: 0.2098 REMARK 3 S TENSOR REMARK 3 S11: -0.1210 S12: -0.0039 S13: -0.1798 REMARK 3 S21: -0.1917 S22: 0.0028 S23: -0.1276 REMARK 3 S31: 0.3482 S32: 0.0510 S33: 0.1183 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 54 D 222 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3710 -16.7180 2.8900 REMARK 3 T TENSOR REMARK 3 T11: 0.2879 T22: 0.2427 REMARK 3 T33: 0.0948 T12: -0.0306 REMARK 3 T13: 0.0241 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.1679 L22: 1.6697 REMARK 3 L33: 1.9636 L12: 0.2620 REMARK 3 L13: -1.5654 L23: -0.2996 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: 0.0081 S13: -0.2251 REMARK 3 S21: 0.1372 S22: -0.0272 S23: 0.2517 REMARK 3 S31: 0.1253 S32: -0.0882 S33: 0.0951 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80115 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3V47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 300, SODIUM ACETATE, PH 4.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.14050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 18 REMARK 465 ASP A 19 REMARK 465 PRO A 20 REMARK 465 GLY A 21 REMARK 465 THR A 22 REMARK 465 THR A 465 REMARK 465 SER A 466 REMARK 465 ALA A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 VAL A 470 REMARK 465 PRO A 471 REMARK 465 ARG A 472 REMARK 465 GLY C 48 REMARK 465 SER C 49 REMARK 465 ALA C 50 REMARK 465 LYS C 51 REMARK 465 ASP C 52 REMARK 465 PRO C 53 REMARK 465 SER C 223 REMARK 465 GLY C 224 REMARK 465 GLU C 225 REMARK 465 ASN C 226 REMARK 465 LEU C 227 REMARK 465 THR C 228 REMARK 465 ALA C 229 REMARK 465 ALA C 230 REMARK 465 ALA B 18 REMARK 465 ASP B 19 REMARK 465 PRO B 20 REMARK 465 GLY B 21 REMARK 465 THR B 22 REMARK 465 SER B 23 REMARK 465 THR B 465 REMARK 465 SER B 466 REMARK 465 ALA B 467 REMARK 465 SER B 468 REMARK 465 LEU B 469 REMARK 465 VAL B 470 REMARK 465 PRO B 471 REMARK 465 ARG B 472 REMARK 465 GLY D 48 REMARK 465 SER D 49 REMARK 465 ALA D 50 REMARK 465 LYS D 51 REMARK 465 ASP D 52 REMARK 465 PRO D 53 REMARK 465 SER D 223 REMARK 465 GLY D 224 REMARK 465 GLU D 225 REMARK 465 ASN D 226 REMARK 465 LEU D 227 REMARK 465 THR D 228 REMARK 465 ALA D 229 REMARK 465 ALA D 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 182 CD CE NZ REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 ARG A 436 CZ NH1 NH2 REMARK 470 LYS A 440 CE NZ REMARK 470 LYS A 456 CE NZ REMARK 470 GLN C 55 CG CD OE1 NE2 REMARK 470 ILE C 56 CG1 CG2 CD1 REMARK 470 ARG C 57 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 LYS C 64 CD CE NZ REMARK 470 ASN C 153 CG OD1 ND2 REMARK 470 GLN C 156 CG CD OE1 NE2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 GLU B 44 CD OE1 OE2 REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 72 CG OD1 OD2 REMARK 470 LYS B 182 CD CE NZ REMARK 470 ASP B 332 CG OD1 OD2 REMARK 470 LYS B 344 CD CE NZ REMARK 470 ARG B 436 CZ NH1 NH2 REMARK 470 LYS B 440 CE NZ REMARK 470 LYS B 456 CE NZ REMARK 470 ARG B 459 NE CZ NH1 NH2 REMARK 470 ARG D 57 NE CZ NH1 NH2 REMARK 470 GLU D 60 CG CD OE1 OE2 REMARK 470 LYS D 64 CD CE NZ REMARK 470 ASN D 153 CG OD1 ND2 REMARK 470 GLN D 156 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 147 NH1 ARG A 172 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 154 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 154 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 MET B 245 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 119 45.40 -100.71 REMARK 500 LEU A 127 48.63 -141.78 REMARK 500 ASN A 156 -157.72 -106.21 REMARK 500 HIS A 174 -4.92 -143.17 REMARK 500 LEU A 204 52.51 -116.12 REMARK 500 THR A 208 -53.15 77.27 REMARK 500 SER A 272 152.27 83.40 REMARK 500 SER A 272 154.53 80.00 REMARK 500 ASN A 326 -156.70 -101.68 REMARK 500 LEU A 339 58.84 -93.28 REMARK 500 ASN A 350 -164.38 -126.48 REMARK 500 ASN A 374 -156.71 -112.01 REMARK 500 ASN A 398 -151.52 -128.14 REMARK 500 ASP C 176 99.63 -161.83 REMARK 500 LEU B 56 40.82 70.56 REMARK 500 GLN B 80 64.52 39.56 REMARK 500 LEU B 119 44.16 -102.42 REMARK 500 ASN B 156 -159.33 -104.92 REMARK 500 HIS B 174 -7.30 -141.82 REMARK 500 LEU B 204 52.20 -116.51 REMARK 500 THR B 208 -51.90 81.08 REMARK 500 SER B 272 154.99 79.00 REMARK 500 ASN B 326 -159.73 -97.49 REMARK 500 LEU B 339 56.56 -101.99 REMARK 500 ASN B 350 -160.32 -128.71 REMARK 500 LEU B 363 55.79 -103.82 REMARK 500 ASN B 374 -158.95 -116.21 REMARK 500 LEU B 387 61.68 -150.82 REMARK 500 ASN B 398 -153.89 -136.45 REMARK 500 CYS B 426 31.24 -97.55 REMARK 500 REMARK 500 REMARK: NULL DBREF 5GY2 A 23 390 UNP B3DIN1 B3DIN1_DANRE 23 390 DBREF 5GY2 A 391 465 UNP Q4G1L2 Q4G1L2_EPTBU 126 200 DBREF 5GY2 C 54 230 UNP E0U497 E0U497_BACPZ 54 230 DBREF 5GY2 B 23 390 UNP B3DIN1 B3DIN1_DANRE 23 390 DBREF 5GY2 B 391 465 UNP Q4G1L2 Q4G1L2_EPTBU 126 200 DBREF 5GY2 D 54 230 UNP E0U497 E0U497_BACPZ 54 230 SEQADV 5GY2 ALA A 18 UNP B3DIN1 EXPRESSION TAG SEQADV 5GY2 ASP A 19 UNP B3DIN1 EXPRESSION TAG SEQADV 5GY2 PRO A 20 UNP B3DIN1 EXPRESSION TAG SEQADV 5GY2 GLY A 21 UNP B3DIN1 EXPRESSION TAG SEQADV 5GY2 THR A 22 UNP B3DIN1 EXPRESSION TAG SEQADV 5GY2 GLU A 24 UNP B3DIN1 VAL 24 ENGINEERED MUTATION SEQADV 5GY2 VAL A 124 UNP B3DIN1 LEU 124 ENGINEERED MUTATION SEQADV 5GY2 LYS A 159 UNP B3DIN1 GLN 159 ENGINEERED MUTATION SEQADV 5GY2 LYS A 227 UNP B3DIN1 ARG 227 ENGINEERED MUTATION SEQADV 5GY2 THR A 229 UNP B3DIN1 SER 229 ENGINEERED MUTATION SEQADV 5GY2 ASN A 334 UNP B3DIN1 ASP 334 ENGINEERED MUTATION SEQADV 5GY2 SER A 466 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 ALA A 467 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 SER A 468 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 LEU A 469 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 VAL A 470 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 PRO A 471 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 ARG A 472 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 GLY C 48 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 SER C 49 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 ALA C 50 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 LYS C 51 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 ASP C 52 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 PRO C 53 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 ALA B 18 UNP B3DIN1 EXPRESSION TAG SEQADV 5GY2 ASP B 19 UNP B3DIN1 EXPRESSION TAG SEQADV 5GY2 PRO B 20 UNP B3DIN1 EXPRESSION TAG SEQADV 5GY2 GLY B 21 UNP B3DIN1 EXPRESSION TAG SEQADV 5GY2 THR B 22 UNP B3DIN1 EXPRESSION TAG SEQADV 5GY2 GLU B 24 UNP B3DIN1 VAL 24 ENGINEERED MUTATION SEQADV 5GY2 VAL B 124 UNP B3DIN1 LEU 124 ENGINEERED MUTATION SEQADV 5GY2 LYS B 159 UNP B3DIN1 GLN 159 ENGINEERED MUTATION SEQADV 5GY2 LYS B 227 UNP B3DIN1 ARG 227 ENGINEERED MUTATION SEQADV 5GY2 THR B 229 UNP B3DIN1 SER 229 ENGINEERED MUTATION SEQADV 5GY2 ASN B 334 UNP B3DIN1 ASP 334 ENGINEERED MUTATION SEQADV 5GY2 SER B 466 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 ALA B 467 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 SER B 468 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 LEU B 469 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 VAL B 470 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 PRO B 471 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 ARG B 472 UNP Q4G1L2 EXPRESSION TAG SEQADV 5GY2 GLY D 48 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 SER D 49 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 ALA D 50 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 LYS D 51 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 ASP D 52 UNP E0U497 EXPRESSION TAG SEQADV 5GY2 PRO D 53 UNP E0U497 EXPRESSION TAG SEQRES 1 A 455 ALA ASP PRO GLY THR SER GLU CYS SER VAL ILE GLY TYR SEQRES 2 A 455 ASN ALA ILE CYS ILE ASN ARG GLY LEU HIS GLN VAL PRO SEQRES 3 A 455 GLU LEU PRO ALA HIS VAL ASN TYR VAL ASP LEU SER LEU SEQRES 4 A 455 ASN SER ILE ALA GLU LEU ASN GLU THR SER PHE SER ARG SEQRES 5 A 455 LEU GLN ASP LEU GLN PHE LEU LYS VAL GLU GLN GLN THR SEQRES 6 A 455 PRO GLY LEU VAL ILE ARG ASN ASN THR PHE ARG GLY LEU SEQRES 7 A 455 SER SER LEU ILE ILE LEU LYS LEU ASP TYR ASN GLN PHE SEQRES 8 A 455 LEU GLN LEU GLU THR GLY ALA PHE ASN GLY LEU ALA ASN SEQRES 9 A 455 LEU GLU VAL LEU THR LEU THR GLN CYS ASN LEU ASP GLY SEQRES 10 A 455 ALA VAL LEU SER GLY ASN PHE PHE LYS PRO LEU THR SER SEQRES 11 A 455 LEU GLU MET LEU VAL LEU ARG ASP ASN ASN ILE LYS LYS SEQRES 12 A 455 ILE GLN PRO ALA SER PHE PHE LEU ASN MET ARG ARG PHE SEQRES 13 A 455 HIS VAL LEU ASP LEU THR PHE ASN LYS VAL LYS SER ILE SEQRES 14 A 455 CYS GLU GLU ASP LEU LEU ASN PHE GLN GLY LYS HIS PHE SEQRES 15 A 455 THR LEU LEU ARG LEU SER SER ILE THR LEU GLN ASP MET SEQRES 16 A 455 ASN GLU TYR TRP LEU GLY TRP GLU LYS CYS GLY ASN PRO SEQRES 17 A 455 PHE LYS ASN THR SER ILE THR THR LEU ASP LEU SER GLY SEQRES 18 A 455 ASN GLY PHE LYS GLU SER MET ALA LYS ARG PHE PHE ASP SEQRES 19 A 455 ALA ILE ALA GLY THR LYS ILE GLN SER LEU ILE LEU SER SEQRES 20 A 455 ASN SER TYR ASN MET GLY SER SER PHE GLY HIS THR ASN SEQRES 21 A 455 PHE LYS ASP PRO ASP ASN PHE THR PHE LYS GLY LEU GLU SEQRES 22 A 455 ALA SER GLY VAL LYS THR CYS ASP LEU SER LYS SER LYS SEQRES 23 A 455 ILE PHE ALA LEU LEU LYS SER VAL PHE SER HIS PHE THR SEQRES 24 A 455 ASP LEU GLU GLN LEU THR LEU ALA GLN ASN GLU ILE ASN SEQRES 25 A 455 LYS ILE ASP ASP ASN ALA PHE TRP GLY LEU THR HIS LEU SEQRES 26 A 455 LEU LYS LEU ASN LEU SER GLN ASN PHE LEU GLY SER ILE SEQRES 27 A 455 ASP SER ARG MET PHE GLU ASN LEU ASP LYS LEU GLU VAL SEQRES 28 A 455 LEU ASP LEU SER TYR ASN HIS ILE ARG ALA LEU GLY ASP SEQRES 29 A 455 GLN SER PHE LEU GLY LEU PRO ASN LEU LYS GLU LEU ALA SEQRES 30 A 455 LEU ASP THR ASN GLN LEU LYS SER VAL PRO ASP GLY ILE SEQRES 31 A 455 PHE ASP ARG LEU THR SER LEU GLN LYS ILE TRP LEU HIS SEQRES 32 A 455 THR ASN PRO TRP ASP CYS SER CYS PRO ARG ILE ASP TYR SEQRES 33 A 455 LEU SER ARG TRP LEU ASN LYS ASN SER GLN LYS GLU GLN SEQRES 34 A 455 GLY SER ALA LYS CYS SER GLY SER GLY LYS PRO VAL ARG SEQRES 35 A 455 SER ILE ILE CYS PRO THR SER ALA SER LEU VAL PRO ARG SEQRES 1 C 183 GLY SER ALA LYS ASP PRO GLY GLN ILE ARG GLY LEU GLU SEQRES 2 C 183 MET ALA SER LYS ASN SER GLN ASP GLY ILE SER LEU ILE SEQRES 3 C 183 GLN THR ALA GLU GLY ALA LEU THR GLU THR HIS ALA ILE SEQRES 4 C 183 LEU GLN ARG MET ARG GLU LEU THR VAL GLN ALA GLY ASN SEQRES 5 C 183 THR GLY THR GLN GLN ALA GLU ASP LEU GLY ALA ILE LYS SEQRES 6 C 183 ASP GLU MET ASP ALA LEU ILE GLU GLU ILE ASP GLY ILE SEQRES 7 C 183 SER ASN ARG THR GLU PHE ASN GLY LYS LYS LEU LEU ASP SEQRES 8 C 183 GLY THR ASN SER THR ASP GLY PHE THR PHE GLN ILE GLY SEQRES 9 C 183 ALA ASN ALA GLY GLN GLN LEU ASN VAL LYS ILE ASP SER SEQRES 10 C 183 MET SER SER THR ALA LEU GLY VAL ASN ALA LEU ASP VAL SEQRES 11 C 183 THR ASP PHE ALA ALA THR ALA PHE ASP ASP GLN LEU LYS SEQRES 12 C 183 SER ILE ASP THR ALA ILE ASN THR VAL SER THR GLN ARG SEQRES 13 C 183 ALA LYS LEU GLY ALA VAL GLN ASN ARG LEU GLU HIS THR SEQRES 14 C 183 ILE ASN ASN LEU GLY ALA SER GLY GLU ASN LEU THR ALA SEQRES 15 C 183 ALA SEQRES 1 B 455 ALA ASP PRO GLY THR SER GLU CYS SER VAL ILE GLY TYR SEQRES 2 B 455 ASN ALA ILE CYS ILE ASN ARG GLY LEU HIS GLN VAL PRO SEQRES 3 B 455 GLU LEU PRO ALA HIS VAL ASN TYR VAL ASP LEU SER LEU SEQRES 4 B 455 ASN SER ILE ALA GLU LEU ASN GLU THR SER PHE SER ARG SEQRES 5 B 455 LEU GLN ASP LEU GLN PHE LEU LYS VAL GLU GLN GLN THR SEQRES 6 B 455 PRO GLY LEU VAL ILE ARG ASN ASN THR PHE ARG GLY LEU SEQRES 7 B 455 SER SER LEU ILE ILE LEU LYS LEU ASP TYR ASN GLN PHE SEQRES 8 B 455 LEU GLN LEU GLU THR GLY ALA PHE ASN GLY LEU ALA ASN SEQRES 9 B 455 LEU GLU VAL LEU THR LEU THR GLN CYS ASN LEU ASP GLY SEQRES 10 B 455 ALA VAL LEU SER GLY ASN PHE PHE LYS PRO LEU THR SER SEQRES 11 B 455 LEU GLU MET LEU VAL LEU ARG ASP ASN ASN ILE LYS LYS SEQRES 12 B 455 ILE GLN PRO ALA SER PHE PHE LEU ASN MET ARG ARG PHE SEQRES 13 B 455 HIS VAL LEU ASP LEU THR PHE ASN LYS VAL LYS SER ILE SEQRES 14 B 455 CYS GLU GLU ASP LEU LEU ASN PHE GLN GLY LYS HIS PHE SEQRES 15 B 455 THR LEU LEU ARG LEU SER SER ILE THR LEU GLN ASP MET SEQRES 16 B 455 ASN GLU TYR TRP LEU GLY TRP GLU LYS CYS GLY ASN PRO SEQRES 17 B 455 PHE LYS ASN THR SER ILE THR THR LEU ASP LEU SER GLY SEQRES 18 B 455 ASN GLY PHE LYS GLU SER MET ALA LYS ARG PHE PHE ASP SEQRES 19 B 455 ALA ILE ALA GLY THR LYS ILE GLN SER LEU ILE LEU SER SEQRES 20 B 455 ASN SER TYR ASN MET GLY SER SER PHE GLY HIS THR ASN SEQRES 21 B 455 PHE LYS ASP PRO ASP ASN PHE THR PHE LYS GLY LEU GLU SEQRES 22 B 455 ALA SER GLY VAL LYS THR CYS ASP LEU SER LYS SER LYS SEQRES 23 B 455 ILE PHE ALA LEU LEU LYS SER VAL PHE SER HIS PHE THR SEQRES 24 B 455 ASP LEU GLU GLN LEU THR LEU ALA GLN ASN GLU ILE ASN SEQRES 25 B 455 LYS ILE ASP ASP ASN ALA PHE TRP GLY LEU THR HIS LEU SEQRES 26 B 455 LEU LYS LEU ASN LEU SER GLN ASN PHE LEU GLY SER ILE SEQRES 27 B 455 ASP SER ARG MET PHE GLU ASN LEU ASP LYS LEU GLU VAL SEQRES 28 B 455 LEU ASP LEU SER TYR ASN HIS ILE ARG ALA LEU GLY ASP SEQRES 29 B 455 GLN SER PHE LEU GLY LEU PRO ASN LEU LYS GLU LEU ALA SEQRES 30 B 455 LEU ASP THR ASN GLN LEU LYS SER VAL PRO ASP GLY ILE SEQRES 31 B 455 PHE ASP ARG LEU THR SER LEU GLN LYS ILE TRP LEU HIS SEQRES 32 B 455 THR ASN PRO TRP ASP CYS SER CYS PRO ARG ILE ASP TYR SEQRES 33 B 455 LEU SER ARG TRP LEU ASN LYS ASN SER GLN LYS GLU GLN SEQRES 34 B 455 GLY SER ALA LYS CYS SER GLY SER GLY LYS PRO VAL ARG SEQRES 35 B 455 SER ILE ILE CYS PRO THR SER ALA SER LEU VAL PRO ARG SEQRES 1 D 183 GLY SER ALA LYS ASP PRO GLY GLN ILE ARG GLY LEU GLU SEQRES 2 D 183 MET ALA SER LYS ASN SER GLN ASP GLY ILE SER LEU ILE SEQRES 3 D 183 GLN THR ALA GLU GLY ALA LEU THR GLU THR HIS ALA ILE SEQRES 4 D 183 LEU GLN ARG MET ARG GLU LEU THR VAL GLN ALA GLY ASN SEQRES 5 D 183 THR GLY THR GLN GLN ALA GLU ASP LEU GLY ALA ILE LYS SEQRES 6 D 183 ASP GLU MET ASP ALA LEU ILE GLU GLU ILE ASP GLY ILE SEQRES 7 D 183 SER ASN ARG THR GLU PHE ASN GLY LYS LYS LEU LEU ASP SEQRES 8 D 183 GLY THR ASN SER THR ASP GLY PHE THR PHE GLN ILE GLY SEQRES 9 D 183 ALA ASN ALA GLY GLN GLN LEU ASN VAL LYS ILE ASP SER SEQRES 10 D 183 MET SER SER THR ALA LEU GLY VAL ASN ALA LEU ASP VAL SEQRES 11 D 183 THR ASP PHE ALA ALA THR ALA PHE ASP ASP GLN LEU LYS SEQRES 12 D 183 SER ILE ASP THR ALA ILE ASN THR VAL SER THR GLN ARG SEQRES 13 D 183 ALA LYS LEU GLY ALA VAL GLN ASN ARG LEU GLU HIS THR SEQRES 14 D 183 ILE ASN ASN LEU GLY ALA SER GLY GLU ASN LEU THR ALA SEQRES 15 D 183 ALA MODRES 5GY2 NAG A 801 NAG -D MODRES 5GY2 NAG B 801 NAG -D HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG A 801 14 HET NAG A 802 14 HET NAG A 803 14 HET PG4 A 806 13 HET NAG B 801 14 HET NAG B 802 14 HET NAG B 803 14 HET PG4 B 806 13 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 10(C8 H15 N O6) FORMUL 10 PG4 2(C8 H18 O5) FORMUL 15 HOH *465(H2 O) HELIX 1 AA1 GLY A 134 GLY A 139 1 6 HELIX 2 AA2 ALA A 164 MET A 170 5 7 HELIX 3 AA3 LEU A 191 GLN A 195 5 5 HELIX 4 AA4 TRP A 216 LYS A 221 5 6 HELIX 5 AA5 LYS A 242 ILE A 253 1 12 HELIX 6 AA6 PHE A 286 SER A 292 5 7 HELIX 7 AA7 ILE A 431 ASN A 441 1 11 HELIX 8 AA8 PRO A 457 ILE A 461 5 5 HELIX 9 AA9 GLN C 55 ASN C 99 1 45 HELIX 10 AB1 GLU C 106 THR C 129 1 24 HELIX 11 AB2 SER C 166 GLY C 171 1 6 HELIX 12 AB3 ALA C 184 ALA C 222 1 39 HELIX 13 AB4 GLY B 134 GLY B 139 1 6 HELIX 14 AB5 ALA B 164 MET B 170 5 7 HELIX 15 AB6 LEU B 191 GLN B 195 5 5 HELIX 16 AB7 TRP B 216 CYS B 222 5 7 HELIX 17 AB8 LYS B 242 ILE B 253 1 12 HELIX 18 AB9 PHE B 286 SER B 292 5 7 HELIX 19 AC1 ILE B 431 ASN B 441 1 11 HELIX 20 AC2 PRO B 457 ILE B 461 5 5 HELIX 21 AC3 GLN D 55 ASN D 99 1 45 HELIX 22 AC4 GLU D 106 THR D 129 1 24 HELIX 23 AC5 SER D 166 GLY D 171 1 6 HELIX 24 AC6 ALA D 184 ALA D 222 1 39 SHEET 1 AA117 SER A 26 ILE A 28 0 SHEET 2 AA117 ASN A 31 ILE A 33 -1 O ILE A 33 N SER A 26 SHEET 3 AA117 TYR A 51 ASP A 53 1 O TYR A 51 N ALA A 32 SHEET 4 AA117 PHE A 75 LYS A 77 1 O LYS A 77 N VAL A 52 SHEET 5 AA117 ILE A 100 LYS A 102 1 O LYS A 102 N LEU A 76 SHEET 6 AA117 VAL A 124 THR A 126 1 O VAL A 124 N LEU A 101 SHEET 7 AA117 MET A 150 VAL A 152 1 O VAL A 152 N LEU A 125 SHEET 8 AA117 VAL A 175 ASP A 177 1 O VAL A 175 N LEU A 151 SHEET 9 AA117 HIS A 198 ARG A 203 1 O ARG A 203 N LEU A 176 SHEET 10 AA117 SER A 230 ASP A 235 1 O ASP A 235 N LEU A 202 SHEET 11 AA117 LYS A 257 ILE A 262 1 O SER A 260 N THR A 232 SHEET 12 AA117 THR A 296 ASP A 298 1 O THR A 296 N LEU A 261 SHEET 13 AA117 GLN A 320 THR A 322 1 O GLN A 320 N CYS A 297 SHEET 14 AA117 LYS A 344 ASN A 346 1 O ASN A 346 N LEU A 321 SHEET 15 AA117 VAL A 368 ASP A 370 1 O VAL A 368 N LEU A 345 SHEET 16 AA117 GLU A 392 ALA A 394 1 O ALA A 394 N LEU A 369 SHEET 17 AA117 LYS A 416 TRP A 418 1 O TRP A 418 N LEU A 393 SHEET 1 AA2 3 GLU A 61 LEU A 62 0 SHEET 2 AA2 3 VAL A 86 ILE A 87 1 O VAL A 86 N LEU A 62 SHEET 3 AA2 3 GLN A 110 LEU A 111 1 O GLN A 110 N ILE A 87 SHEET 1 AA3 2 ALA A 306 LEU A 307 0 SHEET 2 AA3 2 LYS A 330 ILE A 331 1 O LYS A 330 N LEU A 307 SHEET 1 AA4 2 GLU C 130 PHE C 131 0 SHEET 2 AA4 2 LYS C 134 LYS C 135 -1 O LYS C 134 N PHE C 131 SHEET 1 AA5 2 PHE C 146 GLN C 149 0 SHEET 2 AA5 2 GLN C 157 VAL C 160 -1 O LEU C 158 N PHE C 148 SHEET 1 AA617 SER B 26 ILE B 28 0 SHEET 2 AA617 ASN B 31 ILE B 33 -1 O ILE B 33 N SER B 26 SHEET 3 AA617 TYR B 51 ASP B 53 1 O TYR B 51 N ALA B 32 SHEET 4 AA617 PHE B 75 LYS B 77 1 O LYS B 77 N VAL B 52 SHEET 5 AA617 ILE B 100 LYS B 102 1 O LYS B 102 N LEU B 76 SHEET 6 AA617 VAL B 124 THR B 126 1 O VAL B 124 N LEU B 101 SHEET 7 AA617 MET B 150 VAL B 152 1 O VAL B 152 N LEU B 125 SHEET 8 AA617 VAL B 175 ASP B 177 1 O ASP B 177 N LEU B 151 SHEET 9 AA617 HIS B 198 ARG B 203 1 O ARG B 203 N LEU B 176 SHEET 10 AA617 SER B 230 ASP B 235 1 O SER B 230 N PHE B 199 SHEET 11 AA617 LYS B 257 ILE B 262 1 O SER B 260 N THR B 232 SHEET 12 AA617 THR B 296 ASP B 298 1 O THR B 296 N LEU B 261 SHEET 13 AA617 GLN B 320 THR B 322 1 O GLN B 320 N CYS B 297 SHEET 14 AA617 LYS B 344 ASN B 346 1 O ASN B 346 N LEU B 321 SHEET 15 AA617 VAL B 368 ASP B 370 1 O VAL B 368 N LEU B 345 SHEET 16 AA617 GLU B 392 ALA B 394 1 O GLU B 392 N LEU B 369 SHEET 17 AA617 LYS B 416 TRP B 418 1 O TRP B 418 N LEU B 393 SHEET 1 AA7 3 GLU B 61 LEU B 62 0 SHEET 2 AA7 3 VAL B 86 ILE B 87 1 O VAL B 86 N LEU B 62 SHEET 3 AA7 3 GLN B 110 LEU B 111 1 O GLN B 110 N ILE B 87 SHEET 1 AA8 2 ALA B 306 LEU B 307 0 SHEET 2 AA8 2 LYS B 330 ILE B 331 1 O LYS B 330 N LEU B 307 SHEET 1 AA9 2 GLU D 130 PHE D 131 0 SHEET 2 AA9 2 LYS D 134 LYS D 135 -1 O LYS D 134 N PHE D 131 SHEET 1 AB1 2 PHE D 146 GLN D 149 0 SHEET 2 AB1 2 GLN D 157 VAL D 160 -1 O LEU D 158 N PHE D 148 SSBOND 1 CYS A 25 CYS A 34 1555 1555 2.18 SSBOND 2 CYS A 187 CYS A 222 1555 1555 2.07 SSBOND 3 CYS A 426 CYS A 451 1555 1555 2.05 SSBOND 4 CYS A 428 CYS A 463 1555 1555 2.10 SSBOND 5 CYS B 25 CYS B 34 1555 1555 2.11 SSBOND 6 CYS B 187 CYS B 222 1555 1555 2.06 SSBOND 7 CYS B 426 CYS B 451 1555 1555 2.05 SSBOND 8 CYS B 428 CYS B 463 1555 1555 2.09 LINK ND2 ASN A 63 C1 NAG A 801 1555 1555 1.45 LINK ND2 ASN A 89 C1 NAG A 802 1555 1555 1.43 LINK ND2 ASN A 228 C1 NAG A 803 1555 1555 1.45 LINK ND2 ASN A 346 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 63 C1 NAG B 801 1555 1555 1.46 LINK ND2 ASN B 89 C1 NAG B 802 1555 1555 1.45 LINK ND2 ASN B 228 C1 NAG B 803 1555 1555 1.47 LINK ND2 ASN B 346 C1 NAG F 1 1555 1555 1.41 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.42 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.42 CISPEP 1 CYS A 428 PRO A 429 0 9.48 CISPEP 2 CYS B 428 PRO B 429 0 8.45 CRYST1 78.146 54.281 165.980 90.00 98.62 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012797 0.000000 0.001940 0.00000 SCALE2 0.000000 0.018423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006094 0.00000