HEADER HYDROLASE 28-SEP-16 5GZH TITLE ENDO-BETA-1,2-GLUCANASE FROM CHITINOPHAGA PINENSIS - LIGAND FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-BETA-1,2-GLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHITINOPHAGA PINENSIS (STRAIN ATCC 43595 / DSM SOURCE 3 2588 / NCIB 11800 / UQM 2034); SOURCE 4 ORGANISM_TAXID: 485918; SOURCE 5 STRAIN: ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034; SOURCE 6 GENE: CPIN_6279; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-30A KEYWDS HYDROLASE, (ALPHA/ALPHA)6-BARREL EXPDTA X-RAY DIFFRACTION AUTHOR K.ABE,M.NAKAJIMA,T.ARAKAWA,S.FUSHINOBU,H.TAGUCHI REVDAT 4 08-NOV-23 5GZH 1 HETSYN REVDAT 3 29-JUL-20 5GZH 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 24-MAY-17 5GZH 1 JRNL REVDAT 1 15-MAR-17 5GZH 0 JRNL AUTH K.ABE,M.NAKAJIMA,T.YAMASHITA,H.MATSUNAGA,S.KAMISUKI, JRNL AUTH 2 T.NIHIRA,Y.TAKAHASHI,N.SUGIMOTO,A.MIYANAGA,H.NAKAI, JRNL AUTH 3 T.ARAKAWA,S.FUSHINOBU,H.TAGUCHI JRNL TITL BIOCHEMICAL AND STRUCTURAL ANALYSES OF A BACTERIAL JRNL TITL 2 ENDO-BETA-1,2-GLUCANASE REVEAL A NEW GLYCOSIDE HYDROLASE JRNL TITL 3 FAMILY JRNL REF J. BIOL. CHEM. V. 292 7487 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28270506 JRNL DOI 10.1074/JBC.M116.762724 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 100115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5317 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7394 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 484 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 639 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.307 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7240 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6454 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9842 ; 1.852 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14864 ; 1.098 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 854 ; 6.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 368 ;37.868 ;23.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1114 ;13.133 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;14.169 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 968 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8312 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1858 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3416 ; 2.387 ; 2.616 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3415 ; 2.387 ; 2.616 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4270 ; 2.959 ; 3.911 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4271 ; 2.958 ; 3.912 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3824 ; 3.104 ; 2.900 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3824 ; 3.104 ; 2.900 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5573 ; 4.392 ; 4.239 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9183 ; 5.614 ;22.498 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9184 ; 5.614 ;22.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1300001728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3EU8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM IODIDE, 7% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.36200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.72400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 CYS A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 GLN A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 LYS A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 THR A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 ASP A 20 REMARK 465 THR A 21 REMARK 465 LEU A 22 REMARK 465 ALA A 23 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 SER B 3 REMARK 465 CYS B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 HIS B 10 REMARK 465 GLN B 11 REMARK 465 SER B 12 REMARK 465 THR B 13 REMARK 465 LYS B 14 REMARK 465 ASP B 15 REMARK 465 SER B 16 REMARK 465 THR B 17 REMARK 465 ALA B 18 REMARK 465 THR B 19 REMARK 465 ASP B 20 REMARK 465 THR B 21 REMARK 465 LEU B 22 REMARK 465 ALA B 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 733 O HOH A 858 2555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 291 CD GLU B 291 OE2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 66 CB - CG - OD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 412 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 59 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 66 CB - CG - OD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP B 66 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP B 172 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 412 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 42 -85.77 -104.62 REMARK 500 TRP A 42 -86.55 -104.62 REMARK 500 ASP A 135 71.45 -105.65 REMARK 500 ASN A 188 56.03 -97.50 REMARK 500 LYS A 199 -120.79 53.63 REMARK 500 ASN A 210 -156.88 -145.24 REMARK 500 HIS A 225 47.74 -146.26 REMARK 500 ALA A 260 57.31 -154.78 REMARK 500 SER A 318 97.06 -160.94 REMARK 500 TRP B 42 -84.89 -102.84 REMARK 500 TRP B 42 -85.98 -102.84 REMARK 500 ASN B 65 48.31 34.08 REMARK 500 ASP B 135 69.98 -103.99 REMARK 500 LYS B 199 -121.39 54.24 REMARK 500 ASN B 210 -155.48 -148.15 REMARK 500 HIS B 225 45.96 -144.47 REMARK 500 ALA B 260 56.50 -157.49 REMARK 500 SER B 318 96.58 -160.24 REMARK 500 GLN B 394 70.35 -100.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GZK RELATED DB: PDB DBREF 5GZH A 1 441 UNP C7PIC2 C7PIC2_CHIPD 1 441 DBREF 5GZH B 1 441 UNP C7PIC2 C7PIC2_CHIPD 1 441 SEQADV 5GZH LEU A 442 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH GLU A 443 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS A 444 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS A 445 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS A 446 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS A 447 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS A 448 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS A 449 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH LEU B 442 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH GLU B 443 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS B 444 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS B 445 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS B 446 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS B 447 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS B 448 UNP C7PIC2 EXPRESSION TAG SEQADV 5GZH HIS B 449 UNP C7PIC2 EXPRESSION TAG SEQRES 1 A 449 MET MET SER CYS GLY GLY SER SER SER HIS GLN SER THR SEQRES 2 A 449 LYS ASP SER THR ALA THR ASP THR LEU ALA LEU SER ALA SEQRES 3 A 449 ASP SER ILE PHE ASN ILE VAL GLU GLU GLN THR PHE GLN SEQRES 4 A 449 TYR PHE TRP ASP GLY ALA GLU PRO VAL SER GLY MET ALA SEQRES 5 A 449 ARG GLU ARG TYR HIS VAL ASP GLY ASN TYR PRO GLU ASN SEQRES 6 A 449 ASP MET ASN VAL VAL THR SER GLY GLY SER GLY PHE GLY SEQRES 7 A 449 VAL MET ALA LEU LEU VAL GLY ILE GLU ARG GLY TYR ILE SEQRES 8 A 449 SER ARG GLU GLN GLY LEU GLU ARG LEU MET LYS ILE VAL SEQRES 9 A 449 SER PHE LEU GLU LYS ALA ASP ARG PHE HIS GLY ALA TRP SEQRES 10 A 449 PRO HIS TRP LEU TYR GLY GLU THR GLY LYS VAL LYS PRO SEQRES 11 A 449 PHE GLY GLN LYS ASP ASN GLY GLY ASP LEU VAL GLU THR SEQRES 12 A 449 SER PHE MET ILE GLN GLY LEU LEU CYS VAL ARG GLN TYR SEQRES 13 A 449 PHE ALA ASN GLY ASN GLU GLN GLU LYS ALA LEU ALA ALA SEQRES 14 A 449 ARG ILE ASP GLN LEU TRP LYS ALA VAL GLU PHE SER TRP SEQRES 15 A 449 TYR ARG ASN GLY LYS ASN VAL LEU TYR TRP HIS TRP SER SEQRES 16 A 449 PRO ASN TYR LYS TRP GLN MET ASN PHE PRO VAL THR GLY SEQRES 17 A 449 TYR ASN GLU CYS LEU ILE MET TYR ILE LEU ALA ALA ALA SEQRES 18 A 449 SER PRO THR HIS GLY ILE PRO ALA GLU VAL TYR HIS GLU SEQRES 19 A 449 GLY TRP ALA LYS SER GLY ALA ILE LYS ASP SER ILE ASN SEQRES 20 A 449 ALA TYR GLY HIS THR LEU LYS LEU SER HIS ASN PHE ALA SEQRES 21 A 449 LYS GLU TYR GLY GLY PRO LEU PHE TRP SER HIS TYR SER SEQRES 22 A 449 TYR LEU GLY LEU ASP PRO HIS GLY LEU LYS ASP ARG TYR SEQRES 23 A 449 ALA ASP TYR TRP GLU ASN ASN LEU ASN HIS VAL LEU ILE SEQRES 24 A 449 ASN ARG GLU TRP CYS ILE GLN ASN PRO LYS HIS TYR LYS SEQRES 25 A 449 GLY TYR GLY PRO ASP SER TRP GLY LEU THR ALA SER TYR SEQRES 26 A 449 SER VAL LYS GLY TYR ALA ALA HIS ALA PRO GLY GLU ASN SEQRES 27 A 449 ASN ASP LEU GLY VAL ILE SER PRO THR ALA ALA LEU SER SEQRES 28 A 449 SER MET PRO TYR THR PRO GLU TYR SER LYS GLN ALA MET SEQRES 29 A 449 VAL HIS TRP TYR ASN ASP MET ARG THR LYS ILE PHE GLY SEQRES 30 A 449 LYS TYR GLY PHE TYR ASP ALA PHE SER GLU THR GLU ASN SEQRES 31 A 449 TRP TYR PRO GLN GLN TYR LEU ALA ILE ASP GLN GLY PRO SEQRES 32 A 449 ILE VAL VAL MET MET GLU ASN TYR ARG SER GLY LEU LEU SEQRES 33 A 449 TRP LYS LEU PHE MET SER CYS PRO GLU VAL GLN ALA GLY SEQRES 34 A 449 LEU LYS LYS LEU ASP PHE GLN SER PRO TYR LEU LYS LEU SEQRES 35 A 449 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 449 MET MET SER CYS GLY GLY SER SER SER HIS GLN SER THR SEQRES 2 B 449 LYS ASP SER THR ALA THR ASP THR LEU ALA LEU SER ALA SEQRES 3 B 449 ASP SER ILE PHE ASN ILE VAL GLU GLU GLN THR PHE GLN SEQRES 4 B 449 TYR PHE TRP ASP GLY ALA GLU PRO VAL SER GLY MET ALA SEQRES 5 B 449 ARG GLU ARG TYR HIS VAL ASP GLY ASN TYR PRO GLU ASN SEQRES 6 B 449 ASP MET ASN VAL VAL THR SER GLY GLY SER GLY PHE GLY SEQRES 7 B 449 VAL MET ALA LEU LEU VAL GLY ILE GLU ARG GLY TYR ILE SEQRES 8 B 449 SER ARG GLU GLN GLY LEU GLU ARG LEU MET LYS ILE VAL SEQRES 9 B 449 SER PHE LEU GLU LYS ALA ASP ARG PHE HIS GLY ALA TRP SEQRES 10 B 449 PRO HIS TRP LEU TYR GLY GLU THR GLY LYS VAL LYS PRO SEQRES 11 B 449 PHE GLY GLN LYS ASP ASN GLY GLY ASP LEU VAL GLU THR SEQRES 12 B 449 SER PHE MET ILE GLN GLY LEU LEU CYS VAL ARG GLN TYR SEQRES 13 B 449 PHE ALA ASN GLY ASN GLU GLN GLU LYS ALA LEU ALA ALA SEQRES 14 B 449 ARG ILE ASP GLN LEU TRP LYS ALA VAL GLU PHE SER TRP SEQRES 15 B 449 TYR ARG ASN GLY LYS ASN VAL LEU TYR TRP HIS TRP SER SEQRES 16 B 449 PRO ASN TYR LYS TRP GLN MET ASN PHE PRO VAL THR GLY SEQRES 17 B 449 TYR ASN GLU CYS LEU ILE MET TYR ILE LEU ALA ALA ALA SEQRES 18 B 449 SER PRO THR HIS GLY ILE PRO ALA GLU VAL TYR HIS GLU SEQRES 19 B 449 GLY TRP ALA LYS SER GLY ALA ILE LYS ASP SER ILE ASN SEQRES 20 B 449 ALA TYR GLY HIS THR LEU LYS LEU SER HIS ASN PHE ALA SEQRES 21 B 449 LYS GLU TYR GLY GLY PRO LEU PHE TRP SER HIS TYR SER SEQRES 22 B 449 TYR LEU GLY LEU ASP PRO HIS GLY LEU LYS ASP ARG TYR SEQRES 23 B 449 ALA ASP TYR TRP GLU ASN ASN LEU ASN HIS VAL LEU ILE SEQRES 24 B 449 ASN ARG GLU TRP CYS ILE GLN ASN PRO LYS HIS TYR LYS SEQRES 25 B 449 GLY TYR GLY PRO ASP SER TRP GLY LEU THR ALA SER TYR SEQRES 26 B 449 SER VAL LYS GLY TYR ALA ALA HIS ALA PRO GLY GLU ASN SEQRES 27 B 449 ASN ASP LEU GLY VAL ILE SER PRO THR ALA ALA LEU SER SEQRES 28 B 449 SER MET PRO TYR THR PRO GLU TYR SER LYS GLN ALA MET SEQRES 29 B 449 VAL HIS TRP TYR ASN ASP MET ARG THR LYS ILE PHE GLY SEQRES 30 B 449 LYS TYR GLY PHE TYR ASP ALA PHE SER GLU THR GLU ASN SEQRES 31 B 449 TRP TYR PRO GLN GLN TYR LEU ALA ILE ASP GLN GLY PRO SEQRES 32 B 449 ILE VAL VAL MET MET GLU ASN TYR ARG SER GLY LEU LEU SEQRES 33 B 449 TRP LYS LEU PHE MET SER CYS PRO GLU VAL GLN ALA GLY SEQRES 34 B 449 LEU LYS LYS LEU ASP PHE GLN SER PRO TYR LEU LYS LEU SEQRES 35 B 449 GLU HIS HIS HIS HIS HIS HIS HET GLC C 1 11 HET GLC C 2 12 HET GLC D 1 11 HET GLC D 2 12 HET IOD A 502 1 HET IOD A 503 1 HET IOD A 504 1 HET IOD A 505 1 HET IOD A 506 1 HET IOD A 507 1 HET IOD A 508 1 HET IOD A 509 1 HET IOD A 510 1 HET IOD A 511 1 HET IOD A 512 1 HET IOD A 513 1 HET IOD A 514 1 HET IOD A 515 1 HET IOD B 502 1 HET IOD B 503 1 HET IOD B 504 1 HET IOD B 505 1 HET IOD B 506 1 HET IOD B 507 1 HET IOD B 508 1 HET IOD B 509 1 HET IOD B 510 1 HET IOD B 511 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM IOD IODIDE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 4(C6 H12 O6) FORMUL 5 IOD 24(I 1-) FORMUL 29 HOH *639(H2 O) HELIX 1 AA1 SER A 25 GLN A 39 1 15 HELIX 2 AA2 TYR A 40 TRP A 42 5 3 HELIX 3 AA3 SER A 72 ARG A 88 1 17 HELIX 4 AA4 SER A 92 ALA A 110 1 19 HELIX 5 AA5 LEU A 140 ALA A 158 1 19 HELIX 6 AA6 ASN A 161 VAL A 178 1 18 HELIX 7 AA7 GLU A 179 ASN A 185 5 7 HELIX 8 AA8 CYS A 212 SER A 222 1 11 HELIX 9 AA9 PRO A 228 GLY A 235 1 8 HELIX 10 AB1 ALA A 237 ALA A 241 5 5 HELIX 11 AB2 PRO A 266 LEU A 275 5 10 HELIX 12 AB3 TYR A 289 ASN A 307 1 19 HELIX 13 AB4 PRO A 346 SER A 351 1 6 HELIX 14 AB5 THR A 356 ILE A 375 1 20 HELIX 15 AB6 ALA A 398 GLY A 414 1 17 HELIX 16 AB7 GLY A 414 SER A 422 1 9 HELIX 17 AB8 CYS A 423 LEU A 433 1 11 HELIX 18 AB9 SER B 25 GLN B 39 1 15 HELIX 19 AC1 TYR B 40 TRP B 42 5 3 HELIX 20 AC2 SER B 72 ARG B 88 1 17 HELIX 21 AC3 SER B 92 ALA B 110 1 19 HELIX 22 AC4 LEU B 140 ALA B 158 1 19 HELIX 23 AC5 ASN B 161 ALA B 177 1 17 HELIX 24 AC6 GLU B 179 ASN B 185 5 7 HELIX 25 AC7 CYS B 212 SER B 222 1 11 HELIX 26 AC8 PRO B 228 GLY B 235 1 8 HELIX 27 AC9 ALA B 237 ALA B 241 5 5 HELIX 28 AD1 PRO B 266 LEU B 275 5 10 HELIX 29 AD2 TYR B 289 ASN B 307 1 19 HELIX 30 AD3 PRO B 346 SER B 352 1 7 HELIX 31 AD4 THR B 356 ILE B 375 1 20 HELIX 32 AD5 ALA B 398 GLY B 414 1 17 HELIX 33 AD6 GLY B 414 SER B 422 1 9 HELIX 34 AD7 CYS B 423 LEU B 433 1 11 SHEET 1 AA1 2 ARG A 55 HIS A 57 0 SHEET 2 AA1 2 GLN A 395 LEU A 397 -1 O TYR A 396 N TYR A 56 SHEET 1 AA2 2 VAL A 69 THR A 71 0 SHEET 2 AA2 2 TRP A 120 TYR A 122 -1 O LEU A 121 N VAL A 70 SHEET 1 AA3 2 GLY A 138 ASP A 139 0 SHEET 2 AA3 2 HIS A 193 TRP A 194 -1 O TRP A 194 N GLY A 138 SHEET 1 AA4 2 LYS A 243 ALA A 248 0 SHEET 2 AA4 2 HIS A 251 LEU A 255 -1 O LEU A 253 N ILE A 246 SHEET 1 AA5 2 LYS A 283 ASP A 284 0 SHEET 2 AA5 2 ALA A 287 ASP A 288 -1 O ALA A 287 N ASP A 284 SHEET 1 AA6 2 ALA A 323 SER A 326 0 SHEET 2 AA6 2 GLY A 329 ALA A 332 -1 O GLY A 329 N SER A 326 SHEET 1 AA7 2 PHE A 376 GLY A 377 0 SHEET 2 AA7 2 GLY A 380 PHE A 381 -1 O GLY A 380 N GLY A 377 SHEET 1 AA8 2 ARG B 55 HIS B 57 0 SHEET 2 AA8 2 GLN B 395 LEU B 397 -1 O TYR B 396 N TYR B 56 SHEET 1 AA9 2 VAL B 69 THR B 71 0 SHEET 2 AA9 2 TRP B 120 TYR B 122 -1 O LEU B 121 N VAL B 70 SHEET 1 AB1 2 GLY B 138 ASP B 139 0 SHEET 2 AB1 2 HIS B 193 TRP B 194 -1 O TRP B 194 N GLY B 138 SHEET 1 AB2 2 LYS B 243 ALA B 248 0 SHEET 2 AB2 2 HIS B 251 LEU B 255 -1 O LEU B 253 N ILE B 246 SHEET 1 AB3 2 LYS B 283 ASP B 284 0 SHEET 2 AB3 2 ALA B 287 ASP B 288 -1 O ALA B 287 N ASP B 284 SHEET 1 AB4 2 ALA B 323 SER B 326 0 SHEET 2 AB4 2 GLY B 329 ALA B 332 -1 O GLY B 329 N SER B 326 SHEET 1 AB5 2 PHE B 376 GLY B 377 0 SHEET 2 AB5 2 GLY B 380 PHE B 381 -1 O GLY B 380 N GLY B 377 LINK C1 GLC C 1 O1 GLC C 2 1555 1555 1.44 LINK C1 GLC D 1 O1 GLC D 2 1555 1555 1.45 CISPEP 1 GLY A 208 TYR A 209 0 -0.99 CISPEP 2 GLY B 208 TYR B 209 0 -0.86 CRYST1 90.965 90.965 124.086 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010993 0.006347 0.000000 0.00000 SCALE2 0.000000 0.012694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008059 0.00000