HEADER HYDROLASE 17-OCT-16 5H2R TITLE CRYSTAL STRUCTURE OF T BRUCEI PHOSPHODIESTERASE B2 BOUND TO COMPOUND TITLE 2 15B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.4.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 185431; SOURCE 4 STRAIN: 927/4 GUTAT10.1 KEYWDS PHOSPHODIESTERASE INHIBITOR TRYPANOSOMA BRUCEI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.G.NOBLE REVDAT 2 08-NOV-23 5H2R 1 LINK REVDAT 1 01-NOV-17 5H2R 0 JRNL AUTH P.S.NG,C.G.NOBLE,F.S.B.NG,S.H.CHEW,C.C.LIM,V.MANOHARAN, JRNL AUTH 2 K.F.WAN,P.VACHASPATI,M.KAISER,N.L.MA,P.GEDECK,C.KOUNDE, JRNL AUTH 3 S.P.S.RAO JRNL TITL TRYPANOSOMAL PHOSPHODIESTERASE B1 AND B2 AS A POTENTIAL JRNL TITL 2 THERAPY FOR HUMAN AFRICAN TRYPANOSOMIASIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 61111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3118 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.09 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4407 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2271 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4174 REMARK 3 BIN R VALUE (WORKING SET) : 0.2233 REMARK 3 BIN FREE R VALUE : 0.2971 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.29 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 233 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 663 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.72800 REMARK 3 B22 (A**2) : -1.72800 REMARK 3 B33 (A**2) : 3.45610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.194 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.137 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.131 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.128 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.127 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5470 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7395 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1990 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 150 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 787 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5470 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 694 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7086 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.68 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.79 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1300001903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61560 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5H2Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% PEG 3350, 0.1 M MES, PH 5.5, REMARK 280 0.2 M MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.26100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.52200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.52200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.26100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 582 REMARK 465 SER A 583 REMARK 465 HIS A 584 REMARK 465 MET A 585 REMARK 465 VAL A 586 REMARK 465 THR A 587 REMARK 465 GLU A 917 REMARK 465 ALA A 918 REMARK 465 GLY B 582 REMARK 465 SER B 583 REMARK 465 HIS B 584 REMARK 465 MET B 585 REMARK 465 VAL B 586 REMARK 465 SER B 802 REMARK 465 TYR B 803 REMARK 465 ASN B 804 REMARK 465 ALA B 918 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 882 -72.05 -126.83 REMARK 500 CYS A 894 -45.15 -158.71 REMARK 500 LYS B 623 70.27 -119.38 REMARK 500 VAL B 882 -72.03 -123.83 REMARK 500 CYS B 894 -36.37 -154.12 REMARK 500 LEU B 895 58.54 -90.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1421 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1422 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH B1437 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B1438 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B1439 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH B1440 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B1441 DISTANCE = 7.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 673 NE2 REMARK 620 2 HIS A 709 NE2 99.6 REMARK 620 3 ASP A 710 OD2 90.6 89.6 REMARK 620 4 ASP A 823 OD1 94.0 87.5 174.8 REMARK 620 5 HOH A1102 O 160.7 99.4 86.5 89.8 REMARK 620 6 HOH A1175 O 88.2 167.1 100.7 81.7 73.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 710 OD1 REMARK 620 2 HOH A1102 O 90.9 REMARK 620 3 HOH A1107 O 81.7 94.0 REMARK 620 4 HOH A1112 O 162.6 89.8 80.9 REMARK 620 5 HOH A1204 O 92.7 176.2 87.7 87.2 REMARK 620 6 HOH A1239 O 102.3 85.9 176.0 95.1 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 673 NE2 REMARK 620 2 HIS B 709 NE2 98.1 REMARK 620 3 ASP B 710 OD2 93.1 85.2 REMARK 620 4 ASP B 823 OD1 94.6 88.9 170.8 REMARK 620 5 HOH B1101 O 162.5 99.2 85.5 88.6 REMARK 620 6 HOH B1110 O 91.8 169.4 98.2 86.4 71.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 710 OD1 REMARK 620 2 HOH B1101 O 98.3 REMARK 620 3 HOH B1103 O 90.4 94.5 REMARK 620 4 HOH B1147 O 173.0 79.2 83.3 REMARK 620 5 HOH B1168 O 97.3 162.6 93.1 86.2 REMARK 620 6 HOH B1228 O 92.1 83.0 176.6 94.1 88.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LLN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LLN B 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H2Q RELATED DB: PDB DBREF 5H2R A 586 918 UNP Q38F42 Q38F42_TRYB2 586 918 DBREF 5H2R B 586 918 UNP Q38F42 Q38F42_TRYB2 586 918 SEQADV 5H2R GLY A 582 UNP Q38F42 EXPRESSION TAG SEQADV 5H2R SER A 583 UNP Q38F42 EXPRESSION TAG SEQADV 5H2R HIS A 584 UNP Q38F42 EXPRESSION TAG SEQADV 5H2R MET A 585 UNP Q38F42 EXPRESSION TAG SEQADV 5H2R GLY B 582 UNP Q38F42 EXPRESSION TAG SEQADV 5H2R SER B 583 UNP Q38F42 EXPRESSION TAG SEQADV 5H2R HIS B 584 UNP Q38F42 EXPRESSION TAG SEQADV 5H2R MET B 585 UNP Q38F42 EXPRESSION TAG SEQRES 1 A 337 GLY SER HIS MET VAL THR ALA ILE THR ASN ARG GLU ARG SEQRES 2 A 337 GLU ALA VAL LEU ARG ILE GLU PHE PRO ASN VAL ASP VAL SEQRES 3 A 337 THR ASP ILE ASP PHE ASP LEU PHE GLN ALA ARG GLU SER SEQRES 4 A 337 THR ASP LYS PRO LEU ASP VAL ALA ALA ALA ILE ALA TYR SEQRES 5 A 337 ARG LEU LEU LEU GLY SER GLY LEU PRO GLN LYS PHE GLY SEQRES 6 A 337 CYS SER ASP GLU VAL LEU LEU ASN PHE ILE LEU GLN CYS SEQRES 7 A 337 ARG LYS LYS TYR ARG ASN VAL PRO TYR HIS ASN PHE TYR SEQRES 8 A 337 HIS VAL VAL ASP VAL CYS GLN THR ILE TYR THR PHE LEU SEQRES 9 A 337 TYR ARG GLY ASN VAL TYR GLU LYS LEU THR GLU LEU GLU SEQRES 10 A 337 CYS PHE VAL LEU LEU ILE THR ALA LEU VAL HIS ASP LEU SEQRES 11 A 337 ASP HIS MET GLY LEU ASN ASN SER PHE TYR LEU LYS THR SEQRES 12 A 337 GLU SER PRO LEU GLY ILE LEU SER SER ALA SER GLY ASN SEQRES 13 A 337 LYS SER VAL LEU GLU VAL HIS HIS CYS ASN LEU ALA VAL SEQRES 14 A 337 GLU ILE LEU SER ASP PRO GLU SER ASP VAL PHE GLY GLY SEQRES 15 A 337 LEU GLU GLY ALA GLU ARG THR LEU ALA PHE ARG SER MET SEQRES 16 A 337 ILE ASP CYS VAL LEU ALA THR ASP MET ALA ARG HIS SER SEQRES 17 A 337 GLU PHE LEU GLU LYS TYR LEU GLU LEU MET LYS THR SER SEQRES 18 A 337 TYR ASN VAL ASP ASP SER ASP HIS ARG GLN MET THR MET SEQRES 19 A 337 ASP VAL LEU MET LYS ALA GLY ASP ILE SER ASN VAL THR SEQRES 20 A 337 LYS PRO PHE ASP ILE SER ARG GLN TRP ALA MET ALA VAL SEQRES 21 A 337 THR GLU GLU PHE TYR ARG GLN GLY ASP MET GLU LYS GLU SEQRES 22 A 337 ARG GLY VAL GLU VAL LEU PRO MET PHE ASP ARG SER LYS SEQRES 23 A 337 ASN MET GLU LEU ALA LYS GLY GLN ILE GLY PHE ILE ASP SEQRES 24 A 337 PHE VAL ALA ALA PRO PHE PHE GLN LYS ILE VAL ASP ALA SEQRES 25 A 337 CYS LEU GLN GLY MET GLN TRP THR VAL ASP ARG THR LYS SEQRES 26 A 337 SER ASN ARG ALA GLN TRP GLU ARG VAL LEU GLU ALA SEQRES 1 B 337 GLY SER HIS MET VAL THR ALA ILE THR ASN ARG GLU ARG SEQRES 2 B 337 GLU ALA VAL LEU ARG ILE GLU PHE PRO ASN VAL ASP VAL SEQRES 3 B 337 THR ASP ILE ASP PHE ASP LEU PHE GLN ALA ARG GLU SER SEQRES 4 B 337 THR ASP LYS PRO LEU ASP VAL ALA ALA ALA ILE ALA TYR SEQRES 5 B 337 ARG LEU LEU LEU GLY SER GLY LEU PRO GLN LYS PHE GLY SEQRES 6 B 337 CYS SER ASP GLU VAL LEU LEU ASN PHE ILE LEU GLN CYS SEQRES 7 B 337 ARG LYS LYS TYR ARG ASN VAL PRO TYR HIS ASN PHE TYR SEQRES 8 B 337 HIS VAL VAL ASP VAL CYS GLN THR ILE TYR THR PHE LEU SEQRES 9 B 337 TYR ARG GLY ASN VAL TYR GLU LYS LEU THR GLU LEU GLU SEQRES 10 B 337 CYS PHE VAL LEU LEU ILE THR ALA LEU VAL HIS ASP LEU SEQRES 11 B 337 ASP HIS MET GLY LEU ASN ASN SER PHE TYR LEU LYS THR SEQRES 12 B 337 GLU SER PRO LEU GLY ILE LEU SER SER ALA SER GLY ASN SEQRES 13 B 337 LYS SER VAL LEU GLU VAL HIS HIS CYS ASN LEU ALA VAL SEQRES 14 B 337 GLU ILE LEU SER ASP PRO GLU SER ASP VAL PHE GLY GLY SEQRES 15 B 337 LEU GLU GLY ALA GLU ARG THR LEU ALA PHE ARG SER MET SEQRES 16 B 337 ILE ASP CYS VAL LEU ALA THR ASP MET ALA ARG HIS SER SEQRES 17 B 337 GLU PHE LEU GLU LYS TYR LEU GLU LEU MET LYS THR SER SEQRES 18 B 337 TYR ASN VAL ASP ASP SER ASP HIS ARG GLN MET THR MET SEQRES 19 B 337 ASP VAL LEU MET LYS ALA GLY ASP ILE SER ASN VAL THR SEQRES 20 B 337 LYS PRO PHE ASP ILE SER ARG GLN TRP ALA MET ALA VAL SEQRES 21 B 337 THR GLU GLU PHE TYR ARG GLN GLY ASP MET GLU LYS GLU SEQRES 22 B 337 ARG GLY VAL GLU VAL LEU PRO MET PHE ASP ARG SER LYS SEQRES 23 B 337 ASN MET GLU LEU ALA LYS GLY GLN ILE GLY PHE ILE ASP SEQRES 24 B 337 PHE VAL ALA ALA PRO PHE PHE GLN LYS ILE VAL ASP ALA SEQRES 25 B 337 CYS LEU GLN GLY MET GLN TRP THR VAL ASP ARG THR LYS SEQRES 26 B 337 SER ASN ARG ALA GLN TRP GLU ARG VAL LEU GLU ALA HET ZN A1001 1 HET MG A1002 1 HET LLN A1003 37 HET ZN B1001 1 HET MG B1002 1 HET LLN B1003 37 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM LLN (4~{A}~{S},8~{A}~{R})-2-CYCLOHEPTYL-4-[4-(2- HETNAM 2 LLN HYDROXYETHYLOXY)-3-[2-(2-OXIDANYLIDENEIMIDAZOLIDIN-1- HETNAM 3 LLN YL)ETHOXY]PHENYL]-4~{A},5,8,8~{A}- HETNAM 4 LLN TETRAHYDROPHTHALAZIN-1-ONE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 LLN 2(C28 H38 N4 O5) FORMUL 9 HOH *663(H2 O) HELIX 1 AA1 THR A 590 ARG A 599 1 10 HELIX 2 AA2 ASP A 613 SER A 620 1 8 HELIX 3 AA3 LYS A 623 GLY A 640 1 18 HELIX 4 AA4 GLY A 640 PHE A 645 1 6 HELIX 5 AA5 SER A 648 LYS A 662 1 15 HELIX 6 AA6 ASN A 670 ARG A 687 1 18 HELIX 7 AA7 ASN A 689 LEU A 694 5 6 HELIX 8 AA8 THR A 695 HIS A 709 1 15 HELIX 9 AA9 ASN A 717 THR A 724 1 8 HELIX 10 AB1 SER A 726 GLY A 736 1 11 HELIX 11 AB2 SER A 739 SER A 754 1 16 HELIX 12 AB3 ASP A 755 ASP A 759 5 5 HELIX 13 AB4 GLU A 765 ALA A 782 1 18 HELIX 14 AB5 THR A 783 ALA A 786 5 4 HELIX 15 AB6 ARG A 787 MET A 799 1 13 HELIX 16 AB7 ASP A 807 ILE A 824 1 18 HELIX 17 AB8 SER A 825 LYS A 829 5 5 HELIX 18 AB9 PRO A 830 GLY A 856 1 27 HELIX 19 AC1 LEU A 860 ASP A 864 5 5 HELIX 20 AC2 GLU A 870 VAL A 882 1 13 HELIX 21 AC3 VAL A 882 CYS A 894 1 13 HELIX 22 AC4 LEU A 895 GLY A 897 5 3 HELIX 23 AC5 MET A 898 LEU A 916 1 19 HELIX 24 AC6 THR B 590 ARG B 599 1 10 HELIX 25 AC7 ASP B 613 THR B 621 1 9 HELIX 26 AC8 LYS B 623 GLY B 640 1 18 HELIX 27 AC9 GLY B 640 PHE B 645 1 6 HELIX 28 AD1 SER B 648 LYS B 662 1 15 HELIX 29 AD2 ASN B 670 ARG B 687 1 18 HELIX 30 AD3 ASN B 689 LEU B 694 5 6 HELIX 31 AD4 THR B 695 HIS B 709 1 15 HELIX 32 AD5 ASN B 717 THR B 724 1 8 HELIX 33 AD6 SER B 726 GLY B 736 1 11 HELIX 34 AD7 SER B 739 ASP B 755 1 17 HELIX 35 AD8 PRO B 756 ASP B 759 5 4 HELIX 36 AD9 GLU B 765 ALA B 782 1 18 HELIX 37 AE1 THR B 783 ALA B 786 5 4 HELIX 38 AE2 ARG B 787 THR B 801 1 15 HELIX 39 AE3 ASP B 807 ILE B 824 1 18 HELIX 40 AE4 SER B 825 LYS B 829 5 5 HELIX 41 AE5 PRO B 830 ARG B 855 1 26 HELIX 42 AE6 LEU B 860 ASP B 864 5 5 HELIX 43 AE7 GLU B 870 VAL B 882 1 13 HELIX 44 AE8 VAL B 882 CYS B 894 1 13 HELIX 45 AE9 LEU B 895 GLY B 897 5 3 HELIX 46 AF1 MET B 898 GLU B 917 1 20 LINK NE2 HIS A 673 ZN ZN A1001 1555 1555 2.18 LINK NE2 HIS A 709 ZN ZN A1001 1555 1555 2.15 LINK OD2 ASP A 710 ZN ZN A1001 1555 1555 2.09 LINK OD1 ASP A 710 MG MG A1002 1555 1555 2.09 LINK OD1 ASP A 823 ZN ZN A1001 1555 1555 2.20 LINK ZN ZN A1001 O HOH A1102 1555 1555 2.32 LINK ZN ZN A1001 O HOH A1175 1555 1555 2.24 LINK MG MG A1002 O HOH A1102 1555 1555 2.02 LINK MG MG A1002 O HOH A1107 1555 1555 2.28 LINK MG MG A1002 O HOH A1112 1555 1555 2.14 LINK MG MG A1002 O HOH A1204 1555 1555 1.95 LINK MG MG A1002 O HOH A1239 1555 1555 2.02 LINK NE2 HIS B 673 ZN ZN B1001 1555 1555 2.16 LINK NE2 HIS B 709 ZN ZN B1001 1555 1555 2.12 LINK OD2 ASP B 710 ZN ZN B1001 1555 1555 2.16 LINK OD1 ASP B 710 MG MG B1002 1555 1555 2.00 LINK OD1 ASP B 823 ZN ZN B1001 1555 1555 2.12 LINK ZN ZN B1001 O HOH B1101 1555 1555 2.52 LINK ZN ZN B1001 O HOH B1110 1555 1555 2.27 LINK MG MG B1002 O HOH B1101 1555 1555 2.06 LINK MG MG B1002 O HOH B1103 1555 1555 2.16 LINK MG MG B1002 O HOH B1147 1555 1555 2.23 LINK MG MG B1002 O HOH B1168 1555 1555 2.12 LINK MG MG B1002 O HOH B1228 1555 1555 1.95 SITE 1 AC1 6 HIS A 673 HIS A 709 ASP A 710 ASP A 823 SITE 2 AC1 6 HOH A1102 HOH A1175 SITE 1 AC2 6 ASP A 710 HOH A1102 HOH A1107 HOH A1112 SITE 2 AC2 6 HOH A1204 HOH A1239 SITE 1 AC3 15 MET A 785 ASN A 826 VAL A 827 SER A 834 SITE 2 AC3 15 ALA A 838 VAL A 841 THR A 842 PHE A 845 SITE 3 AC3 15 MET A 862 LEU A 871 GLY A 874 GLN A 875 SITE 4 AC3 15 PHE A 878 HOH A1168 HOH A1298 SITE 1 AC4 6 HIS B 673 HIS B 709 ASP B 710 ASP B 823 SITE 2 AC4 6 HOH B1101 HOH B1110 SITE 1 AC5 6 ASP B 710 HOH B1101 HOH B1103 HOH B1147 SITE 2 AC5 6 HOH B1168 HOH B1228 SITE 1 AC6 14 MET B 785 ASN B 826 VAL B 827 ALA B 838 SITE 2 AC6 14 VAL B 841 THR B 842 PHE B 845 MET B 862 SITE 3 AC6 14 GLY B 874 GLN B 875 PHE B 878 HOH B1102 SITE 4 AC6 14 HOH B1140 HOH B1261 CRYST1 97.756 97.756 120.783 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010230 0.005906 0.000000 0.00000 SCALE2 0.000000 0.011812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008279 0.00000