HEADER ISOMERASE 18-OCT-16 5H2Y TITLE CRYSTAL STRUCTURE OF REDUCED DAPF FROM CORYNEBACTERIUM GLUTAMICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIAMINOPIMELATE EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DAP EPIMERASE; COMPND 5 EC: 5.1.1.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM (STRAIN ATCC 13032 / SOURCE 3 DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025); SOURCE 4 ORGANISM_TAXID: 196627; SOURCE 5 STRAIN: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025; SOURCE 6 GENE: DAPF, CGL1943, CG2129; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-Y.SAGONG,K.-J.KIM REVDAT 4 20-MAR-24 5H2Y 1 REMARK REVDAT 3 09-SEP-20 5H2Y 1 TITLE REVDAT 2 19-JUL-17 5H2Y 1 JRNL REMARK REVDAT 1 09-NOV-16 5H2Y 0 JRNL AUTH H.Y.SAGONG,K.J.KIM JRNL TITL STRUCTURAL BASIS FOR REDOX SENSITIVITY IN CORYNEBACTERIUM JRNL TITL 2 GLUTAMICUM DIAMINOPIMELATE EPIMERASE: AN ENZYME INVOLVED IN JRNL TITL 3 L-LYSINE BIOSYNTHESIS. JRNL REF SCI REP V. 7 42318 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28176858 JRNL DOI 10.1038/SREP42318 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 58955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3114 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4180 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.4150 REMARK 3 BIN FREE R VALUE SET COUNT : 195 REMARK 3 BIN FREE R VALUE : 0.4510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.40000 REMARK 3 B22 (A**2) : -2.03000 REMARK 3 B33 (A**2) : 3.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.959 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4158 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3905 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5661 ; 2.180 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8965 ; 1.133 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 552 ; 8.223 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;38.138 ;24.590 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;15.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;13.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 660 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4844 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 906 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2214 ; 4.354 ; 3.977 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2213 ; 4.354 ; 3.975 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2764 ; 6.168 ; 5.948 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 5H2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1300001908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM PHOSPHATE MONOBASIC, POTASSIUM REMARK 280 PHOSPHATE DIBASIC, CAPS, LITHIUM SULFATE, PH 10.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.87850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.46900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.66650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.87850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.46900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.66650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.87850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.46900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.66650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.87850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.46900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.66650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 MET B 1 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 465 HIS B 282 REMARK 465 HIS B 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 81 O HOH B 301 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 212 CD GLU A 212 OE2 0.070 REMARK 500 GLU B 32 CG GLU B 32 CD 0.093 REMARK 500 GLU B 32 CD GLU B 32 OE1 0.070 REMARK 500 SER B 125 CB SER B 125 OG -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 76 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 76 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 122 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 136 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 51 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 51 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 64 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 GLY B 84 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG B 97 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 97 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 106 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 110 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 129 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 185 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 81 -90.25 -90.66 REMARK 500 ASP A 122 -157.41 -136.51 REMARK 500 ILE A 277 99.69 -64.01 REMARK 500 GLU B 14 23.52 81.70 REMARK 500 ASP B 22 53.62 -148.77 REMARK 500 MET B 70 78.48 -69.03 REMARK 500 ASP B 71 83.63 -69.22 REMARK 500 MET B 82 -49.71 -131.52 REMARK 500 CYS B 83 -48.86 97.51 REMARK 500 ASN B 102 138.18 -170.33 REMARK 500 PHE B 189 78.01 -118.50 REMARK 500 LEU B 201 130.80 -39.81 REMARK 500 VAL B 215 -45.14 -142.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H2G RELATED DB: PDB DBREF 5H2Y A 1 277 UNP Q8NP73 DAPF_CORGL 1 277 DBREF 5H2Y B 1 277 UNP Q8NP73 DAPF_CORGL 1 277 SEQADV 5H2Y HIS A 278 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS A 279 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS A 280 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS A 281 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS A 282 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS A 283 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS B 278 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS B 279 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS B 280 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS B 281 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS B 282 UNP Q8NP73 EXPRESSION TAG SEQADV 5H2Y HIS B 283 UNP Q8NP73 EXPRESSION TAG SEQRES 1 A 283 MET ASN LEU THR ILE PRO PHE ALA LYS GLY HIS ALA THR SEQRES 2 A 283 GLU ASN ASP PHE ILE ILE ILE PRO ASP GLU ASP ALA ARG SEQRES 3 A 283 LEU ASP LEU THR PRO GLU MET VAL VAL THR LEU CYS ASP SEQRES 4 A 283 ARG ARG ALA GLY ILE GLY ALA ASP GLY ILE LEU ARG VAL SEQRES 5 A 283 VAL LYS ALA ALA ASP VAL GLU GLY SER THR VAL ASP PRO SEQRES 6 A 283 SER LEU TRP PHE MET ASP TYR ARG ASN ALA ASP GLY SER SEQRES 7 A 283 LEU ALA GLU MET CYS GLY ASN GLY VAL ARG LEU PHE ALA SEQRES 8 A 283 HIS TRP LEU TYR SER ARG GLY LEU VAL ASP ASN THR SER SEQRES 9 A 283 PHE ASP ILE GLY THR ARG ALA GLY VAL ARG HIS VAL ASP SEQRES 10 A 283 ILE LEU GLN ALA ASP GLN HIS SER ALA GLN VAL ARG VAL SEQRES 11 A 283 ASP MET GLY ILE PRO ASP VAL THR GLY LEU SER THR CYS SEQRES 12 A 283 ASP ILE ASN GLY GLN VAL PHE ALA GLY LEU GLY VAL ASP SEQRES 13 A 283 MET GLY ASN PRO HIS LEU ALA CYS VAL VAL PRO GLY LEU SEQRES 14 A 283 SER ALA SER ALA LEU ALA ASP MET GLU LEU ARG ALA PRO SEQRES 15 A 283 THR PHE ASP GLN GLU PHE PHE PRO HIS GLY VAL ASN VAL SEQRES 16 A 283 GLU ILE VAL THR GLU LEU GLU ASP ASP ALA VAL SER MET SEQRES 17 A 283 ARG VAL TRP GLU ARG GLY VAL GLY GLU THR ARG SER CYS SEQRES 18 A 283 GLY THR GLY THR VAL ALA ALA ALA CYS ALA ALA LEU ALA SEQRES 19 A 283 ASP ALA GLY LEU GLY GLU GLY THR VAL LYS VAL CYS VAL SEQRES 20 A 283 PRO GLY GLY GLU VAL GLU VAL GLN ILE PHE ASP ASP GLY SEQRES 21 A 283 SER THR LEU THR GLY PRO SER ALA ILE ILE ALA LEU GLY SEQRES 22 A 283 GLU VAL GLN ILE HIS HIS HIS HIS HIS HIS SEQRES 1 B 283 MET ASN LEU THR ILE PRO PHE ALA LYS GLY HIS ALA THR SEQRES 2 B 283 GLU ASN ASP PHE ILE ILE ILE PRO ASP GLU ASP ALA ARG SEQRES 3 B 283 LEU ASP LEU THR PRO GLU MET VAL VAL THR LEU CYS ASP SEQRES 4 B 283 ARG ARG ALA GLY ILE GLY ALA ASP GLY ILE LEU ARG VAL SEQRES 5 B 283 VAL LYS ALA ALA ASP VAL GLU GLY SER THR VAL ASP PRO SEQRES 6 B 283 SER LEU TRP PHE MET ASP TYR ARG ASN ALA ASP GLY SER SEQRES 7 B 283 LEU ALA GLU MET CYS GLY ASN GLY VAL ARG LEU PHE ALA SEQRES 8 B 283 HIS TRP LEU TYR SER ARG GLY LEU VAL ASP ASN THR SER SEQRES 9 B 283 PHE ASP ILE GLY THR ARG ALA GLY VAL ARG HIS VAL ASP SEQRES 10 B 283 ILE LEU GLN ALA ASP GLN HIS SER ALA GLN VAL ARG VAL SEQRES 11 B 283 ASP MET GLY ILE PRO ASP VAL THR GLY LEU SER THR CYS SEQRES 12 B 283 ASP ILE ASN GLY GLN VAL PHE ALA GLY LEU GLY VAL ASP SEQRES 13 B 283 MET GLY ASN PRO HIS LEU ALA CYS VAL VAL PRO GLY LEU SEQRES 14 B 283 SER ALA SER ALA LEU ALA ASP MET GLU LEU ARG ALA PRO SEQRES 15 B 283 THR PHE ASP GLN GLU PHE PHE PRO HIS GLY VAL ASN VAL SEQRES 16 B 283 GLU ILE VAL THR GLU LEU GLU ASP ASP ALA VAL SER MET SEQRES 17 B 283 ARG VAL TRP GLU ARG GLY VAL GLY GLU THR ARG SER CYS SEQRES 18 B 283 GLY THR GLY THR VAL ALA ALA ALA CYS ALA ALA LEU ALA SEQRES 19 B 283 ASP ALA GLY LEU GLY GLU GLY THR VAL LYS VAL CYS VAL SEQRES 20 B 283 PRO GLY GLY GLU VAL GLU VAL GLN ILE PHE ASP ASP GLY SEQRES 21 B 283 SER THR LEU THR GLY PRO SER ALA ILE ILE ALA LEU GLY SEQRES 22 B 283 GLU VAL GLN ILE HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *185(H2 O) HELIX 1 AA1 THR A 30 ASP A 39 1 10 HELIX 2 AA2 ALA A 56 VAL A 58 5 3 HELIX 3 AA3 CYS A 83 ARG A 97 1 15 HELIX 4 AA4 SER A 170 MET A 177 1 8 HELIX 5 AA5 CYS A 221 ALA A 236 1 16 HELIX 6 AA6 THR B 30 ASP B 39 1 10 HELIX 7 AA7 ALA B 56 VAL B 58 5 3 HELIX 8 AA8 GLY B 84 ARG B 97 1 14 HELIX 9 AA9 SER B 170 MET B 177 1 8 HELIX 10 AB1 CYS B 221 ASP B 235 1 15 SHEET 1 AA113 TRP A 68 ASN A 74 0 SHEET 2 AA113 GLY A 48 LYS A 54 -1 N VAL A 53 O PHE A 69 SHEET 3 AA113 ASN A 15 PRO A 21 1 N ILE A 18 O LEU A 50 SHEET 4 AA113 THR A 4 ALA A 12 -1 N ALA A 8 O ILE A 19 SHEET 5 AA113 GLY A 260 GLN A 276 -1 O ALA A 268 N HIS A 11 SHEET 6 AA113 GLY A 250 PHE A 257 -1 N PHE A 257 O GLY A 260 SHEET 7 AA113 GLY A 241 VAL A 247 -1 N VAL A 247 O GLY A 250 SHEET 8 AA113 ALA A 205 GLU A 212 1 N MET A 208 O CYS A 246 SHEET 9 AA113 ASN A 194 VAL A 198 -1 N ILE A 197 O ARG A 209 SHEET 10 AA113 PRO A 160 VAL A 165 1 N CYS A 164 O GLU A 196 SHEET 11 AA113 GLN A 148 ASP A 156 -1 N LEU A 153 O ALA A 163 SHEET 12 AA113 ASP A 136 ILE A 145 -1 N SER A 141 O GLY A 152 SHEET 13 AA113 THR A 183 PHE A 184 -1 O THR A 183 N ASP A 144 SHEET 1 AA2 8 SER A 104 ILE A 107 0 SHEET 2 AA2 8 ARG A 114 ALA A 121 -1 O VAL A 116 N PHE A 105 SHEET 3 AA2 8 SER A 125 ASP A 131 -1 O ARG A 129 N ASP A 117 SHEET 4 AA2 8 GLY A 260 GLN A 276 -1 O GLY A 265 N VAL A 128 SHEET 5 AA2 8 GLY A 250 PHE A 257 -1 N PHE A 257 O GLY A 260 SHEET 6 AA2 8 GLY A 241 VAL A 247 -1 N VAL A 247 O GLY A 250 SHEET 7 AA2 8 ALA A 205 GLU A 212 1 N MET A 208 O CYS A 246 SHEET 8 AA2 8 GLY A 216 GLU A 217 -1 O GLY A 216 N GLU A 212 SHEET 1 AA318 TRP A 68 ASN A 74 0 SHEET 2 AA318 GLY A 48 LYS A 54 -1 N VAL A 53 O PHE A 69 SHEET 3 AA318 ASN A 15 PRO A 21 1 N ILE A 18 O LEU A 50 SHEET 4 AA318 THR A 4 ALA A 12 -1 N ALA A 8 O ILE A 19 SHEET 5 AA318 GLY A 260 GLN A 276 -1 O ALA A 268 N HIS A 11 SHEET 6 AA318 GLY B 260 GLN B 276 -1 O ILE B 270 N GLN A 276 SHEET 7 AA318 THR B 4 ALA B 12 -1 N PHE B 7 O GLY B 273 SHEET 8 AA318 ASN B 15 PRO B 21 -1 O ILE B 19 N ALA B 8 SHEET 9 AA318 GLY B 48 LYS B 54 1 O LEU B 50 N ILE B 18 SHEET 10 AA318 TRP B 68 ASN B 74 -1 O PHE B 69 N VAL B 53 SHEET 11 AA318 SER B 104 GLY B 108 1 O GLY B 108 N TRP B 68 SHEET 12 AA318 ARG B 114 ALA B 121 -1 O ARG B 114 N ILE B 107 SHEET 13 AA318 SER B 125 ASP B 131 -1 O ARG B 129 N ASP B 117 SHEET 14 AA318 GLY B 260 GLN B 276 -1 O LEU B 263 N VAL B 130 SHEET 15 AA318 GLY B 250 PHE B 257 -1 N GLU B 253 O THR B 264 SHEET 16 AA318 GLY B 241 VAL B 247 -1 N GLY B 241 O ILE B 256 SHEET 17 AA318 ALA B 205 GLU B 212 1 N VAL B 206 O CYS B 246 SHEET 18 AA318 GLY B 216 THR B 218 -1 O GLY B 216 N GLU B 212 SHEET 1 AA4 7 GLY B 216 THR B 218 0 SHEET 2 AA4 7 ALA B 205 GLU B 212 -1 N GLU B 212 O GLY B 216 SHEET 3 AA4 7 ASN B 194 VAL B 198 -1 N VAL B 195 O TRP B 211 SHEET 4 AA4 7 PRO B 160 VAL B 165 1 N CYS B 164 O GLU B 196 SHEET 5 AA4 7 VAL B 149 ASP B 156 -1 N VAL B 155 O HIS B 161 SHEET 6 AA4 7 ASP B 136 ASP B 144 -1 N ASP B 136 O ASP B 156 SHEET 7 AA4 7 THR B 183 PHE B 184 -1 O THR B 183 N ASP B 144 CRYST1 101.757 118.938 153.333 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009827 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006522 0.00000