HEADER HYDROLASE INHIBITOR/PEPTIDE 21-NOV-16 5H7Y TITLE STRUCTURE OF IMMUNITY PROTEIN TPLEI OF T6SS FROM PSEUDOMONAS TITLE 2 AERUGINOSA COMPLEXED WITH "L" PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 82-108; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA1509; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 13 ORGANISM_TAXID: 208964; SOURCE 14 STRAIN: PAO1; SOURCE 15 GENE: PA1510; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PDUET KEYWDS ANTIMICROBIAL PEPTIDE, EFFECTOR -IMMUNITY COMPLEX, INHIBITOR, KEYWDS 2 HYDROLASE INHIBITOR-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.P.GAO,Z.X.MU,S.CUI REVDAT 2 18-OCT-17 5H7Y 1 JRNL REVDAT 1 04-OCT-17 5H7Y 0 JRNL AUTH X.P.GAO,Z.X.MU,B.QIN,Y.SUN,S.CUI JRNL TITL STRUCTURE-BASED PROTOTYPE PEPTIDES TARGETING THE PSEUDOMONAS JRNL TITL 2 AERUGINOSA TYPE VI SECRETION SYSTEM EFFECTOR AS A NOVEL JRNL TITL 3 ANTIBACTERIAL STRATEGY JRNL REF FRONT CELL INFECT MICROBIOL V. 7 411 2017 JRNL REFN ESSN 2235-2988 JRNL PMID 28979890 JRNL DOI 10.3389/FCIMB.2017.00411 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8012 - 5.6358 1.00 2694 98 0.2138 0.1921 REMARK 3 2 5.6358 - 4.4769 1.00 2634 144 0.1609 0.1951 REMARK 3 3 4.4769 - 3.9121 1.00 2623 155 0.1669 0.2086 REMARK 3 4 3.9121 - 3.5549 1.00 2604 162 0.1702 0.2166 REMARK 3 5 3.5549 - 3.3003 1.00 2638 145 0.1734 0.2220 REMARK 3 6 3.3003 - 3.1059 1.00 2666 129 0.1834 0.2280 REMARK 3 7 3.1059 - 2.9505 1.00 2640 148 0.1803 0.2078 REMARK 3 8 2.9505 - 2.8221 1.00 2628 140 0.1782 0.3083 REMARK 3 9 2.8221 - 2.7135 1.00 2660 126 0.1820 0.2174 REMARK 3 10 2.7135 - 2.6199 1.00 2644 142 0.1767 0.2026 REMARK 3 11 2.6199 - 2.5380 1.00 2636 151 0.1823 0.2255 REMARK 3 12 2.5380 - 2.4655 1.00 2595 155 0.1859 0.2537 REMARK 3 13 2.4655 - 2.4006 1.00 2657 142 0.1807 0.2489 REMARK 3 14 2.4006 - 2.3421 1.00 2648 131 0.1925 0.2301 REMARK 3 15 2.3421 - 2.2888 1.00 2630 153 0.1868 0.2255 REMARK 3 16 2.2888 - 2.2401 0.99 2627 135 0.2266 0.2938 REMARK 3 17 2.2401 - 2.1953 0.97 2535 141 0.2374 0.2708 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2496 REMARK 3 ANGLE : 1.188 3380 REMARK 3 CHIRALITY : 0.059 356 REMARK 3 PLANARITY : 0.008 433 REMARK 3 DIHEDRAL : 11.391 1466 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300002178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97876 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL TYPE SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25539 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 34.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.22 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM HEPES, 20%(W/V) PEG REMARK 280 10000, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.71033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.42067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.06550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 106.77583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.35517 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.71033 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 85.42067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 106.77583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.06550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.35517 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 443 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 VAL A 19 REMARK 465 PRO A 20 REMARK 465 ARG A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 HIS A 24 REMARK 465 MSE A 25 REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 ARG A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 SER A 32 REMARK 465 MSE A 33 REMARK 465 GLN A 91 REMARK 465 ARG A 92 REMARK 465 HIS A 93 REMARK 465 LYS A 94 REMARK 465 SER A 95 REMARK 465 LYS A 96 REMARK 465 GLY A 97 REMARK 465 ASN A 98 REMARK 465 SER A 118 REMARK 465 GLU A 119 REMARK 465 VAL A 120 REMARK 465 ALA A 121 REMARK 465 SER A 122 REMARK 465 LYS A 123 REMARK 465 VAL A 148 REMARK 465 ASP A 149 REMARK 465 ARG A 150 REMARK 465 GLU A 301 REMARK 465 ASN A 302 REMARK 465 GLY A 303 REMARK 465 LYS A 304 REMARK 465 SER A 333 REMARK 465 SER A 334 REMARK 465 SER A 335 REMARK 465 PRO A 336 REMARK 465 ARG A 337 REMARK 465 GLY A 338 REMARK 465 GLY A 339 REMARK 465 ASN A 340 REMARK 465 ALA A 341 REMARK 465 GLY A 342 REMARK 465 PRO A 343 REMARK 465 SER A 344 REMARK 465 PRO A 345 REMARK 465 ALA A 346 REMARK 465 PRO A 347 REMARK 465 LYS A 348 REMARK 465 PRO A 349 REMARK 465 ALA A 350 REMARK 465 THR A 351 REMARK 465 PRO A 352 REMARK 465 GLY A 353 REMARK 465 GLY A 354 REMARK 465 GLN A 355 REMARK 465 THR A 356 REMARK 465 LEU A 357 REMARK 465 GLY A 358 REMARK 465 ASP A 359 REMARK 465 HIS A 360 REMARK 465 TYR A 361 REMARK 465 VAL A 362 REMARK 465 TYR A 363 REMARK 465 GLU A 364 REMARK 465 GLU A 365 REMARK 465 PHE A 366 REMARK 465 LEU A 367 REMARK 465 SER A 368 REMARK 465 SER A 369 REMARK 465 LEU A 370 REMARK 465 LYS A 371 REMARK 465 PRO A 372 REMARK 465 LYS A 373 REMARK 465 ASP A 374 REMARK 465 SER A 375 REMARK 465 TRP A 376 REMARK 465 LEU A 377 REMARK 465 ASP A 378 REMARK 465 ASP A 379 REMARK 465 LEU A 380 REMARK 465 ASP B 82 REMARK 465 ALA B 108 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 163 HH12 ARG A 166 1.49 REMARK 500 OE1 GLU A 176 HH TYR A 185 1.55 REMARK 500 O HOH A 423 O HOH A 503 1.92 REMARK 500 O HOH A 422 O HOH A 452 1.98 REMARK 500 O HOH A 471 O HOH A 533 2.01 REMARK 500 O HOH A 529 O HOH A 530 2.08 REMARK 500 O HOH A 472 O HOH A 526 2.17 REMARK 500 O HOH A 453 O HOH A 527 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS A 248 CD - CE - NZ ANGL. DEV. = -14.5 DEGREES REMARK 500 LEU A 289 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 35 33.60 -95.20 REMARK 500 LEU A 101 -58.33 -133.28 REMARK 500 ASN A 108 50.29 -90.44 REMARK 500 HIS A 183 16.99 56.36 REMARK 500 ASP A 189 22.14 -142.67 REMARK 500 TRP B 94 -48.69 -140.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 546 DISTANCE = 8.19 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H7Z RELATED DB: PDB DBREF 5H7Y A 26 380 UNP Q9I3K3 Q9I3K3_PSEAE 26 380 DBREF 5H7Y B 82 108 UNP Q9I3K2 Q9I3K2_PSEAE 82 108 SEQADV 5H7Y MSE A 5 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y GLY A 6 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y SER A 7 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y SER A 8 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y HIS A 9 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y HIS A 10 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y HIS A 11 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y HIS A 12 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y HIS A 13 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y HIS A 14 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y SER A 15 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y SER A 16 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y GLY A 17 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y LEU A 18 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y VAL A 19 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y PRO A 20 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y ARG A 21 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y GLY A 22 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y SER A 23 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y HIS A 24 UNP Q9I3K3 EXPRESSION TAG SEQADV 5H7Y MSE A 25 UNP Q9I3K3 EXPRESSION TAG SEQRES 1 A 376 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 376 LEU VAL PRO ARG GLY SER HIS MSE SER SER SER ARG SER SEQRES 3 A 376 SER SER MSE ASP LYS THR GLY TRP ILE THR HIS CYS PHE SEQRES 4 A 376 GLY ARG PHE LEU ILE ASP LEU PRO PRO ASP ALA VAL ILE SEQRES 5 A 376 ASN ALA GLY TYR TYR LEU TRP GLY ASP ARG ILE GLU TYR SEQRES 6 A 376 LEU ASP ASP LYS PRO THR GLU LEU ALA ALA ARG VAL ASP SEQRES 7 A 376 ARG LEU GLU GLN GLU TRP ARG THR GLN ARG HIS LYS SER SEQRES 8 A 376 LYS GLY ASN MSE PHE LEU ARG LYS ILE ASP PHE GLY ASN SEQRES 9 A 376 GLU SER VAL GLY LEU LEU SER TRP SER SER GLU VAL ALA SEQRES 10 A 376 SER LYS THR TYR LEU LEU ASP THR TYR VAL THR SER LYS SEQRES 11 A 376 PRO THR TRP HIS VAL TYR ARG TRP LYS GLY LYS VAL SER SEQRES 12 A 376 VAL ASP ARG GLU GLN HIS ALA VAL GLU ILE SER ARG ALA SEQRES 13 A 376 LEU ALA ARG ASN LEU ARG SER ARG ALA PRO LYS GLU ILE SEQRES 14 A 376 PRO SER GLU PRO GLY PHE CYS ILE ASP HIS ALA TYR ILE SEQRES 15 A 376 ALA GLY ASP SER PHE GLN VAL GLU ARG PHE GLY VAL GLY SEQRES 16 A 376 VAL THR PHE PRO GLU HIS PRO GLY ALA ARG PHE GLU PHE SEQRES 17 A 376 ARG SER SER THR GLY ALA GLU LEU ASN SER LEU LEU GLU SEQRES 18 A 376 ARG VAL ASP GLY PHE VAL GLN ASN MSE LEU SER THR PHE SEQRES 19 A 376 ALA GLY MSE GLU THR LEU ARG LYS GLY LYS HIS PRO VAL SEQRES 20 A 376 GLY SER LEU PRO GLY GLU GLU TYR LEU VAL ALA GLY SER SEQRES 21 A 376 ASP LYS GLY GLN ARG GLY TYR THR PHE MSE TRP GLU VAL SEQRES 22 A 376 GLN GLY LYS GLU GLU SER LEU THR GLU PRO ASN LEU THR SEQRES 23 A 376 ALA GLY LEU ALA VAL LEU GLU ARG SER ASN GLU ASN GLY SEQRES 24 A 376 LYS PRO PRO PRO PRO ALA PHE LYS SER ASP LYS GLU ALA SEQRES 25 A 376 LEU GLU LEU TRP ASP THR ILE VAL ASP SER ILE ARG VAL SEQRES 26 A 376 ARG PRO THR SER SER SER PRO ARG GLY GLY ASN ALA GLY SEQRES 27 A 376 PRO SER PRO ALA PRO LYS PRO ALA THR PRO GLY GLY GLN SEQRES 28 A 376 THR LEU GLY ASP HIS TYR VAL TYR GLU GLU PHE LEU SER SEQRES 29 A 376 SER LEU LYS PRO LYS ASP SER TRP LEU ASP ASP LEU SEQRES 1 B 27 ASP ASP LEU PHE ALA SER ILE GLY ALA LEU TRP THR TRP SEQRES 2 B 27 ALA TRP ARG GLY PRO LYS ALA ARG GLN GLU LEU LEU LYS SEQRES 3 B 27 ALA MODRES 5H7Y MSE A 99 MET MODIFIED RESIDUE MODRES 5H7Y MSE A 234 MET MODIFIED RESIDUE MODRES 5H7Y MSE A 241 MET MODIFIED RESIDUE MODRES 5H7Y MSE A 274 MET MODIFIED RESIDUE HET MSE A 99 17 HET MSE A 234 17 HET MSE A 241 17 HET MSE A 274 17 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *153(H2 O) HELIX 1 AA1 LYS A 73 THR A 90 1 18 HELIX 2 AA2 GLN A 152 ASN A 164 1 13 HELIX 3 AA3 SER A 222 PHE A 238 1 17 HELIX 4 AA4 SER A 312 ASP A 325 1 14 HELIX 5 AA5 LEU B 84 TRP B 94 1 11 HELIX 6 AA6 GLY B 98 LYS B 107 1 10 SHEET 1 AA1 3 ILE A 39 PHE A 43 0 SHEET 2 AA1 3 PHE A 46 LEU A 50 -1 O ILE A 48 N HIS A 41 SHEET 3 AA1 3 ARG A 328 VAL A 329 -1 O ARG A 328 N LEU A 47 SHEET 1 AA212 PHE A 100 ASP A 105 0 SHEET 2 AA212 VAL A 111 SER A 115 -1 O LEU A 114 N ARG A 102 SHEET 3 AA212 TYR A 125 THR A 132 -1 O TYR A 130 N VAL A 111 SHEET 4 AA212 VAL A 139 VAL A 146 -1 O VAL A 146 N TYR A 125 SHEET 5 AA212 ASP A 65 LEU A 70 -1 N LEU A 70 O VAL A 139 SHEET 6 AA212 VAL A 55 LEU A 62 -1 N LEU A 62 O ASP A 65 SHEET 7 AA212 GLU A 194 THR A 201 -1 O GLY A 199 N ASN A 57 SHEET 8 AA212 ALA A 208 SER A 215 -1 O PHE A 210 N VAL A 200 SHEET 9 AA212 ASN A 288 VAL A 295 -1 O GLY A 292 N GLU A 211 SHEET 10 AA212 GLN A 268 VAL A 277 -1 N PHE A 273 O LEU A 293 SHEET 11 AA212 GLU A 257 ASP A 265 -1 N ASP A 265 O GLN A 268 SHEET 12 AA212 MSE A 241 LYS A 248 -1 N ARG A 245 O LEU A 260 SHEET 1 AA3 3 LEU A 165 SER A 167 0 SHEET 2 AA3 3 ALA A 184 ALA A 187 -1 O TYR A 185 N ARG A 166 SHEET 3 AA3 3 GLY A 178 ILE A 181 -1 N PHE A 179 O ILE A 186 LINK C MSE A 99 N PHE A 100 1555 1555 1.33 LINK C ASN A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N LEU A 235 1555 1555 1.33 LINK C GLY A 240 N MSE A 241 1555 1555 1.34 LINK C MSE A 241 N GLU A 242 1555 1555 1.34 LINK C PHE A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N TRP A 275 1555 1555 1.33 CISPEP 1 LYS A 134 PRO A 135 0 -0.67 CRYST1 113.614 113.614 128.131 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008802 0.005082 0.000000 0.00000 SCALE2 0.000000 0.010163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007805 0.00000