HEADER HYDROLASE 23-DEC-15 5H8C TITLE TRUNCATED XPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: XPD/RAD3 RELATED DNA HELICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: XPD HELICASE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE PROTEIN DEGRADED (DOMAIN CLIPPED OFF) DURING COMPND 7 CRYSTALLISATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 3 ORGANISM_TAXID: 2285; SOURCE 4 GENE: SACN8_00920; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.NAISMITH,D.CONSTANTINESCU REVDAT 4 08-MAY-24 5H8C 1 REMARK REVDAT 3 20-APR-16 5H8C 1 JRNL REVDAT 2 02-MAR-16 5H8C 1 JRNL REVDAT 1 13-JAN-16 5H8C 0 JRNL AUTH D.CONSTANTINESCU-ARUXANDEI,B.PETROVIC-STOJANOVSKA, JRNL AUTH 2 J.C.PENEDO,M.F.WHITE,J.H.NAISMITH JRNL TITL MECHANISM OF DNA LOADING BY THE DNA REPAIR HELICASE XPD. JRNL REF NUCLEIC ACIDS RES. V. 44 2806 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 26896802 JRNL DOI 10.1093/NAR/GKW102 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 21920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1186 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1579 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2750 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.03000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 2.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.240 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.512 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2821 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2805 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3841 ; 1.676 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6485 ; 1.417 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 6.853 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;37.483 ;24.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;14.210 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.384 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3032 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 591 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1338 ; 1.543 ; 4.908 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1337 ; 1.542 ; 4.907 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1669 ; 2.540 ; 7.352 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1670 ; 2.539 ; 7.353 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1483 ; 1.983 ; 5.176 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1484 ; 1.982 ; 5.176 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2111 ; 3.003 ; 7.651 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2961 ; 4.881 ;37.568 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2962 ; 4.880 ;37.578 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2830 2.0690 5.6260 REMARK 3 T TENSOR REMARK 3 T11: 0.5349 T22: 0.1933 REMARK 3 T33: 0.4461 T12: 0.0129 REMARK 3 T13: 0.0443 T23: 0.1316 REMARK 3 L TENSOR REMARK 3 L11: 12.4963 L22: 3.5409 REMARK 3 L33: 10.8347 L12: 1.9322 REMARK 3 L13: -1.8206 L23: 2.1893 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: -0.9677 S13: -1.0213 REMARK 3 S21: 0.9804 S22: -0.1985 S23: 0.5761 REMARK 3 S31: 0.4637 S32: -0.9062 S33: 0.2102 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2950 18.1780 6.4870 REMARK 3 T TENSOR REMARK 3 T11: 0.2602 T22: 0.1169 REMARK 3 T33: 0.2498 T12: -0.0535 REMARK 3 T13: 0.0846 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 8.3687 L22: 3.5226 REMARK 3 L33: 2.0564 L12: -2.7924 REMARK 3 L13: -0.6546 L23: 0.3905 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.9172 S13: -0.5850 REMARK 3 S21: 0.6685 S22: 0.1496 S23: 0.3671 REMARK 3 S31: 0.0039 S32: 0.0237 S33: -0.1121 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9400 39.5080 -4.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.2132 T22: 0.0906 REMARK 3 T33: 0.3461 T12: -0.1051 REMARK 3 T13: -0.0013 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 5.5865 L22: 3.6763 REMARK 3 L33: 9.1408 L12: -1.4317 REMARK 3 L13: -3.1565 L23: -0.5216 REMARK 3 S TENSOR REMARK 3 S11: 0.1164 S12: -0.2550 S13: 0.4154 REMARK 3 S21: 0.2337 S22: -0.2860 S23: 0.0206 REMARK 3 S31: -0.3284 S32: 0.6058 S33: 0.1696 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0800 35.0740 3.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.2599 T22: 0.0710 REMARK 3 T33: 0.2328 T12: -0.0424 REMARK 3 T13: 0.0379 T23: -0.1040 REMARK 3 L TENSOR REMARK 3 L11: 4.1565 L22: 5.7367 REMARK 3 L33: 2.8739 L12: -0.5837 REMARK 3 L13: -0.5543 L23: -0.6404 REMARK 3 S TENSOR REMARK 3 S11: -0.1539 S12: -0.3456 S13: 0.6969 REMARK 3 S21: 0.4750 S22: 0.1731 S23: 0.0137 REMARK 3 S31: -0.5674 S32: 0.0230 S33: -0.0193 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 154 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8480 18.8990 -7.0180 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: 0.0342 REMARK 3 T33: 0.1572 T12: 0.0311 REMARK 3 T13: 0.0284 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 4.3230 L22: 5.0058 REMARK 3 L33: 6.6855 L12: 0.2465 REMARK 3 L13: 0.1443 L23: -0.0969 REMARK 3 S TENSOR REMARK 3 S11: 0.2363 S12: 0.2359 S13: 0.3413 REMARK 3 S21: -0.3689 S22: -0.2328 S23: -0.0414 REMARK 3 S31: -0.2937 S32: 0.1724 S33: -0.0035 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7730 35.1720 -31.8810 REMARK 3 T TENSOR REMARK 3 T11: 0.3013 T22: 0.2855 REMARK 3 T33: 0.3234 T12: 0.0851 REMARK 3 T13: -0.0340 T23: 0.1529 REMARK 3 L TENSOR REMARK 3 L11: 2.9219 L22: 5.5356 REMARK 3 L33: 8.6711 L12: 0.9225 REMARK 3 L13: -1.5498 L23: 2.8092 REMARK 3 S TENSOR REMARK 3 S11: -0.1693 S12: 0.1572 S13: -0.0376 REMARK 3 S21: -0.1559 S22: 0.0477 S23: -0.3601 REMARK 3 S31: 0.4976 S32: 1.1123 S33: 0.1216 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3090 32.8940 -23.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.3981 T22: 0.1448 REMARK 3 T33: 0.3463 T12: 0.1152 REMARK 3 T13: -0.0326 T23: 0.1466 REMARK 3 L TENSOR REMARK 3 L11: 2.2318 L22: 2.7281 REMARK 3 L33: 5.5967 L12: 0.0009 REMARK 3 L13: -1.4267 L23: 0.3597 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: -0.0731 S13: 0.0690 REMARK 3 S21: -0.3102 S22: -0.3089 S23: -0.0421 REMARK 3 S31: 0.3944 S32: 0.5756 S33: 0.3470 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 304 A 346 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1320 4.9730 -7.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.0389 REMARK 3 T33: 0.2439 T12: -0.0121 REMARK 3 T13: -0.0385 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 5.0436 L22: 3.6309 REMARK 3 L33: 4.5695 L12: -1.4349 REMARK 3 L13: 0.1835 L23: 0.2943 REMARK 3 S TENSOR REMARK 3 S11: 0.1925 S12: 0.1573 S13: -0.4011 REMARK 3 S21: -0.1194 S22: -0.2919 S23: 0.2457 REMARK 3 S31: 0.5239 S32: -0.2772 S33: 0.0994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5H8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 7.4, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.40000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 ARG A 5 REMARK 465 ASP A 6 REMARK 465 TRP A 7 REMARK 465 SER A 284 REMARK 465 ILE A 285 REMARK 465 GLY A 286 REMARK 465 SER A 287 REMARK 465 GLU A 347 REMARK 465 ARG A 348 REMARK 465 GLU A 349 REMARK 465 ILE A 350 REMARK 465 GLN A 351 REMARK 465 LYS A 352 REMARK 465 ARG A 353 REMARK 465 VAL A 354 REMARK 465 SER A 355 REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 TYR A 358 REMARK 465 GLU A 359 REMARK 465 CYS A 360 REMARK 465 TYR A 361 REMARK 465 ILE A 362 REMARK 465 GLY A 363 REMARK 465 VAL A 364 REMARK 465 ASP A 365 REMARK 465 VAL A 366 REMARK 465 THR A 367 REMARK 465 SER A 368 REMARK 465 LYS A 369 REMARK 465 TYR A 370 REMARK 465 ASP A 371 REMARK 465 MET A 372 REMARK 465 ARG A 373 REMARK 465 SER A 374 REMARK 465 ASP A 375 REMARK 465 ASN A 376 REMARK 465 MET A 377 REMARK 465 TRP A 378 REMARK 465 LYS A 379 REMARK 465 ARG A 380 REMARK 465 TYR A 381 REMARK 465 ALA A 382 REMARK 465 ASP A 383 REMARK 465 TYR A 384 REMARK 465 LEU A 385 REMARK 465 LEU A 386 REMARK 465 LYS A 387 REMARK 465 ILE A 388 REMARK 465 TYR A 389 REMARK 465 PHE A 390 REMARK 465 GLN A 391 REMARK 465 ALA A 392 REMARK 465 LYS A 393 REMARK 465 ALA A 394 REMARK 465 ASN A 395 REMARK 465 VAL A 396 REMARK 465 LEU A 397 REMARK 465 VAL A 398 REMARK 465 VAL A 399 REMARK 465 PHE A 400 REMARK 465 PRO A 401 REMARK 465 SER A 402 REMARK 465 TYR A 403 REMARK 465 GLU A 404 REMARK 465 ILE A 405 REMARK 465 MET A 406 REMARK 465 ASP A 407 REMARK 465 ARG A 408 REMARK 465 VAL A 409 REMARK 465 MET A 410 REMARK 465 SER A 411 REMARK 465 ARG A 412 REMARK 465 ILE A 413 REMARK 465 SER A 414 REMARK 465 LEU A 415 REMARK 465 PRO A 416 REMARK 465 LYS A 417 REMARK 465 TYR A 418 REMARK 465 VAL A 419 REMARK 465 GLU A 420 REMARK 465 SER A 421 REMARK 465 GLU A 422 REMARK 465 ASP A 423 REMARK 465 SER A 424 REMARK 465 SER A 425 REMARK 465 VAL A 426 REMARK 465 GLU A 427 REMARK 465 ASP A 428 REMARK 465 LEU A 429 REMARK 465 TYR A 430 REMARK 465 SER A 431 REMARK 465 ALA A 432 REMARK 465 ILE A 433 REMARK 465 SER A 434 REMARK 465 ALA A 435 REMARK 465 ASN A 436 REMARK 465 ASN A 437 REMARK 465 LYS A 438 REMARK 465 VAL A 439 REMARK 465 LEU A 440 REMARK 465 ILE A 441 REMARK 465 GLY A 442 REMARK 465 SER A 443 REMARK 465 VAL A 444 REMARK 465 GLY A 445 REMARK 465 LYS A 446 REMARK 465 GLY A 447 REMARK 465 LYS A 448 REMARK 465 LEU A 449 REMARK 465 ALA A 450 REMARK 465 GLU A 451 REMARK 465 GLY A 452 REMARK 465 ILE A 453 REMARK 465 GLU A 454 REMARK 465 LEU A 455 REMARK 465 ARG A 456 REMARK 465 ASN A 457 REMARK 465 ASN A 458 REMARK 465 ASP A 459 REMARK 465 ARG A 460 REMARK 465 SER A 461 REMARK 465 LEU A 462 REMARK 465 ILE A 463 REMARK 465 SER A 464 REMARK 465 ASP A 465 REMARK 465 VAL A 466 REMARK 465 VAL A 467 REMARK 465 ILE A 468 REMARK 465 VAL A 469 REMARK 465 GLY A 470 REMARK 465 ILE A 471 REMARK 465 PRO A 472 REMARK 465 TYR A 473 REMARK 465 PRO A 474 REMARK 465 PRO A 475 REMARK 465 PRO A 476 REMARK 465 ASP A 477 REMARK 465 ASP A 478 REMARK 465 TYR A 479 REMARK 465 LEU A 480 REMARK 465 LYS A 481 REMARK 465 ILE A 482 REMARK 465 LEU A 483 REMARK 465 ALA A 484 REMARK 465 GLN A 485 REMARK 465 ARG A 486 REMARK 465 VAL A 487 REMARK 465 SER A 488 REMARK 465 LEU A 489 REMARK 465 LYS A 490 REMARK 465 MET A 491 REMARK 465 ASN A 492 REMARK 465 ARG A 493 REMARK 465 GLU A 494 REMARK 465 ASN A 495 REMARK 465 GLU A 496 REMARK 465 GLU A 497 REMARK 465 PHE A 498 REMARK 465 LEU A 499 REMARK 465 PHE A 500 REMARK 465 LYS A 501 REMARK 465 ILE A 502 REMARK 465 PRO A 503 REMARK 465 ALA A 504 REMARK 465 LEU A 505 REMARK 465 VAL A 506 REMARK 465 THR A 507 REMARK 465 ILE A 508 REMARK 465 LYS A 509 REMARK 465 GLN A 510 REMARK 465 ALA A 511 REMARK 465 ILE A 512 REMARK 465 GLY A 513 REMARK 465 ARG A 514 REMARK 465 ALA A 515 REMARK 465 ILE A 516 REMARK 465 ARG A 517 REMARK 465 ASP A 518 REMARK 465 VAL A 519 REMARK 465 ASN A 520 REMARK 465 ASP A 521 REMARK 465 LYS A 522 REMARK 465 CYS A 523 REMARK 465 ASN A 524 REMARK 465 VAL A 525 REMARK 465 TRP A 526 REMARK 465 LEU A 527 REMARK 465 LEU A 528 REMARK 465 ASP A 529 REMARK 465 LYS A 530 REMARK 465 ARG A 531 REMARK 465 PHE A 532 REMARK 465 GLU A 533 REMARK 465 SER A 534 REMARK 465 LEU A 535 REMARK 465 TYR A 536 REMARK 465 TRP A 537 REMARK 465 LYS A 538 REMARK 465 LYS A 539 REMARK 465 ASN A 540 REMARK 465 LEU A 541 REMARK 465 LYS A 542 REMARK 465 CYS A 543 REMARK 465 LEU A 544 REMARK 465 ASN A 545 REMARK 465 ALA A 546 REMARK 465 ASN A 547 REMARK 465 LYS A 548 REMARK 465 MET A 549 REMARK 465 LYS A 550 REMARK 465 LEU A 551 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 9 -95.68 -164.52 REMARK 500 LYS A 12 -54.00 177.76 REMARK 500 PRO A 101 54.61 -90.74 REMARK 500 LYS A 233 130.80 -173.32 REMARK 500 ASN A 239 72.39 54.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 10 LEU A 11 144.85 REMARK 500 GLY A 266 LYS A 267 -141.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 88 SG REMARK 620 2 SF4 A 601 S1 114.0 REMARK 620 3 SF4 A 601 S2 119.0 102.7 REMARK 620 4 SF4 A 601 S4 112.5 101.4 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 102 SG REMARK 620 2 SF4 A 601 S1 117.5 REMARK 620 3 SF4 A 601 S3 120.0 104.5 REMARK 620 4 SF4 A 601 S4 103.5 102.9 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 105 SG REMARK 620 2 SF4 A 601 S1 114.9 REMARK 620 3 SF4 A 601 S2 124.4 102.5 REMARK 620 4 SF4 A 601 S3 106.4 104.4 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 137 SG REMARK 620 2 SF4 A 601 S2 125.4 REMARK 620 3 SF4 A 601 S3 104.6 102.1 REMARK 620 4 SF4 A 601 S4 111.7 105.2 106.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 601 DBREF 5H8C A 3 551 UNP M1J2P5 M1J2P5_9CREN 3 551 SEQADV 5H8C MET A 1 UNP M1J2P5 INITIATING METHIONINE SEQADV 5H8C VAL A 2 UNP M1J2P5 EXPRESSION TAG SEQRES 1 A 551 MET VAL LYS LEU ARG ASP TRP GLN GLU LYS LEU LYS ASP SEQRES 2 A 551 LYS VAL ILE GLU GLY LEU ARG ASN ASN PHE LEU VAL ALA SEQRES 3 A 551 LEU ASN ALA PRO THR GLY SER GLY LYS THR LEU PHE SER SEQRES 4 A 551 LEU LEU VAL SER LEU GLU VAL LYS PRO LYS VAL LEU PHE SEQRES 5 A 551 VAL VAL ARG THR HIS ASN GLU PHE TYR PRO ILE TYR ARG SEQRES 6 A 551 ASP LEU THR LYS ILE ARG GLU LYS ARG ASN ILE THR PHE SEQRES 7 A 551 SER PHE LEU VAL GLY LYS PRO SER SER CYS LEU TYR ALA SEQRES 8 A 551 GLU LYS GLY ALA GLU SER GLU ASP ILE PRO CYS LYS TYR SEQRES 9 A 551 CYS GLU LEU LYS GLY SER ILE VAL GLU VAL LYS THR ASP SEQRES 10 A 551 ASP SER PRO LEU SER LEU VAL LYS LYS LEU LYS LYS ASP SEQRES 11 A 551 GLY LEU GLN ASP LYS PHE CYS PRO TYR TYR SER LEU LEU SEQRES 12 A 551 ASN SER LEU TYR LYS ALA ASP VAL ILE ALA LEU THR TYR SEQRES 13 A 551 PRO TYR PHE PHE ILE ASP ARG TYR ARG GLU PHE ILE ASP SEQRES 14 A 551 ILE ASP LEU ARG GLU TYR MET ILE VAL ILE ASP GLU ALA SEQRES 15 A 551 HIS ASN LEU ASP LYS VAL ASN GLU LEU GLU GLU ARG SER SEQRES 16 A 551 LEU SER GLU ILE THR ILE GLN MET ALA ILE LYS GLN SER SEQRES 17 A 551 LYS SER GLU GLU SER ARG ARG ILE LEU SER LYS LEU LEU SEQRES 18 A 551 ASN GLN LEU ARG GLU VAL VAL LEU PRO ASP GLU LYS TYR SEQRES 19 A 551 ILE LYS VAL GLU ASN VAL PRO LYS LEU SER LYS GLU GLU SEQRES 20 A 551 LEU GLU ILE LEU ALA ASP ASP TYR GLU ASP ILE ARG LYS SEQRES 21 A 551 ASP SER LEU LYS GLN GLY LYS VAL ASN LYS ILE HIS ILE SEQRES 22 A 551 GLY SER ILE LEU ARG PHE PHE SER LEU LEU SER ILE GLY SEQRES 23 A 551 SER PHE ILE PRO PHE SER TYR SER LYS ARG LEU VAL ILE SEQRES 24 A 551 LYS ASN PRO GLU ILE SER TYR TYR LEU ASN LEU LEU ASN SEQRES 25 A 551 ASP ASN GLU LEU SER ILE ILE LEU MET SER GLY THR LEU SEQRES 26 A 551 PRO PRO ARG GLU TYR MET GLU LYS VAL TRP GLY ILE LYS SEQRES 27 A 551 ARG ASN MET LEU TYR LEU ASP VAL GLU ARG GLU ILE GLN SEQRES 28 A 551 LYS ARG VAL SER GLY SER TYR GLU CYS TYR ILE GLY VAL SEQRES 29 A 551 ASP VAL THR SER LYS TYR ASP MET ARG SER ASP ASN MET SEQRES 30 A 551 TRP LYS ARG TYR ALA ASP TYR LEU LEU LYS ILE TYR PHE SEQRES 31 A 551 GLN ALA LYS ALA ASN VAL LEU VAL VAL PHE PRO SER TYR SEQRES 32 A 551 GLU ILE MET ASP ARG VAL MET SER ARG ILE SER LEU PRO SEQRES 33 A 551 LYS TYR VAL GLU SER GLU ASP SER SER VAL GLU ASP LEU SEQRES 34 A 551 TYR SER ALA ILE SER ALA ASN ASN LYS VAL LEU ILE GLY SEQRES 35 A 551 SER VAL GLY LYS GLY LYS LEU ALA GLU GLY ILE GLU LEU SEQRES 36 A 551 ARG ASN ASN ASP ARG SER LEU ILE SER ASP VAL VAL ILE SEQRES 37 A 551 VAL GLY ILE PRO TYR PRO PRO PRO ASP ASP TYR LEU LYS SEQRES 38 A 551 ILE LEU ALA GLN ARG VAL SER LEU LYS MET ASN ARG GLU SEQRES 39 A 551 ASN GLU GLU PHE LEU PHE LYS ILE PRO ALA LEU VAL THR SEQRES 40 A 551 ILE LYS GLN ALA ILE GLY ARG ALA ILE ARG ASP VAL ASN SEQRES 41 A 551 ASP LYS CYS ASN VAL TRP LEU LEU ASP LYS ARG PHE GLU SEQRES 42 A 551 SER LEU TYR TRP LYS LYS ASN LEU LYS CYS LEU ASN ALA SEQRES 43 A 551 ASN LYS MET LYS LEU HET SF4 A 601 8 HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 2 SF4 FE4 S4 FORMUL 3 HOH *7(H2 O) HELIX 1 AA1 LYS A 12 ASN A 21 1 10 HELIX 2 AA2 GLY A 34 GLU A 45 1 12 HELIX 3 AA3 THR A 56 ASN A 58 5 3 HELIX 4 AA4 GLU A 59 ARG A 74 1 16 HELIX 5 AA5 GLY A 83 CYS A 88 1 6 HELIX 6 AA6 GLU A 96 ILE A 100 5 5 HELIX 7 AA7 PRO A 101 CYS A 105 5 5 HELIX 8 AA8 SER A 119 LYS A 135 1 17 HELIX 9 AA9 CYS A 137 ALA A 149 1 13 HELIX 10 AB1 TYR A 156 ILE A 161 1 6 HELIX 11 AB2 ILE A 161 GLU A 166 1 6 HELIX 12 AB3 ASP A 171 ARG A 173 5 3 HELIX 13 AB4 GLU A 181 LEU A 191 5 11 HELIX 14 AB5 SER A 197 SER A 208 1 12 HELIX 15 AB6 SER A 210 VAL A 228 1 19 HELIX 16 AB7 SER A 244 GLN A 265 1 22 HELIX 17 AB8 ILE A 271 LEU A 282 1 12 HELIX 18 AB9 GLU A 303 ASN A 309 1 7 HELIX 19 AC1 LEU A 310 ASP A 313 5 4 HELIX 20 AC2 PRO A 327 VAL A 334 1 8 SHEET 1 AA1 7 PHE A 78 PHE A 80 0 SHEET 2 AA1 7 VAL A 151 THR A 155 1 O VAL A 151 N SER A 79 SHEET 3 AA1 7 LYS A 49 VAL A 54 1 N PHE A 52 O ILE A 152 SHEET 4 AA1 7 TYR A 175 ILE A 179 1 O VAL A 178 N LEU A 51 SHEET 5 AA1 7 SER A 317 SER A 322 1 O SER A 317 N ILE A 177 SHEET 6 AA1 7 LEU A 24 ASN A 28 1 N LEU A 27 O LEU A 320 SHEET 7 AA1 7 MET A 341 ASP A 345 1 O LEU A 344 N ALA A 26 SHEET 1 AA2 4 SER A 195 LEU A 196 0 SHEET 2 AA2 4 ARG A 296 VAL A 298 -1 O LEU A 297 N LEU A 196 SHEET 3 AA2 4 PHE A 291 TYR A 293 -1 N PHE A 291 O VAL A 298 SHEET 4 AA2 4 ILE A 235 LYS A 236 -1 N ILE A 235 O SER A 292 LINK SG CYS A 88 FE3 SF4 A 601 1555 1555 2.28 LINK SG CYS A 102 FE2 SF4 A 601 1555 1555 2.26 LINK SG CYS A 105 FE4 SF4 A 601 1555 1555 2.38 LINK SG CYS A 137 FE1 SF4 A 601 1555 1555 2.29 SITE 1 AC1 5 CYS A 88 ILE A 100 CYS A 102 CYS A 105 SITE 2 AC1 5 CYS A 137 CRYST1 64.800 77.800 99.540 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010046 0.00000