HEADER TRANSFERASE, HYDROLASE/INHIBITOR 31-DEC-15 5HBM TITLE CRYSTAL STRUCTURE OF A DIHYDROXYCOUMARIN RNASE H ACTIVE-SITE INHIBITOR TITLE 2 IN COMPLEX WITH HIV-1 REVERSE TRANSCRIPTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P66 DOMAIN, RESIDUES 600-1153; COMPND 5 SYNONYM: EXORIBONUCLEASE H, P66 RT; COMPND 6 EC: 2.7.7.49,2.7.7.7,3.1.26.13,3.1.13.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: P51 RT; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: P51 DOMAIN, RESIDUES 604-1027; COMPND 13 SYNONYM: PR160GAG-POL; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 BH10; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11678; SOURCE 5 STRAIN: ISOLATE BH10; SOURCE 6 GENE: GAG-POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET52A; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 BH10; SOURCE 14 ORGANISM_COMMON: HIV-1; SOURCE 15 ORGANISM_TAXID: 11678; SOURCE 16 STRAIN: ISOLATE BH10; SOURCE 17 GENE: GAG-POL; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET52A KEYWDS TRANSFERASE, HYDROLASE, INHIBITOR, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.A.KIRBY,S.G.SARAFIANOS REVDAT 4 27-SEP-23 5HBM 1 REMARK LINK REVDAT 3 11-DEC-19 5HBM 1 REMARK REVDAT 2 20-SEP-17 5HBM 1 REMARK REVDAT 1 24-FEB-16 5HBM 0 JRNL AUTH K.A.KIRBY,S.G.SARAFIANOS JRNL TITL CRYSTAL STRUCTURE OF A DIHYDROXYCOUMARIN RNASE H ACTIVE-SITE JRNL TITL 2 INHIBITOR IN COMPLEX WITH HIV-1 REVERSE TRANSCRIPTASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 29476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3633 - 6.7565 0.97 2619 131 0.1792 0.2024 REMARK 3 2 6.7565 - 5.3671 0.99 2571 136 0.2174 0.2489 REMARK 3 3 5.3671 - 4.6899 0.99 2543 167 0.2082 0.2473 REMARK 3 4 4.6899 - 4.2617 0.99 2570 133 0.2060 0.2626 REMARK 3 5 4.2617 - 3.9565 0.99 2579 121 0.2469 0.3221 REMARK 3 6 3.9565 - 3.7235 1.00 2554 138 0.2513 0.3010 REMARK 3 7 3.7235 - 3.5371 0.99 2535 130 0.2579 0.3182 REMARK 3 8 3.5371 - 3.3832 1.00 2554 146 0.2588 0.2874 REMARK 3 9 3.3832 - 3.2531 1.00 2557 136 0.2892 0.3204 REMARK 3 10 3.2531 - 3.1408 1.00 2534 132 0.3018 0.3758 REMARK 3 11 3.1408 - 3.0427 0.93 2370 120 0.3269 0.4252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 8163 REMARK 3 ANGLE : 0.601 11083 REMARK 3 CHIRALITY : 0.043 1199 REMARK 3 PLANARITY : 0.005 1392 REMARK 3 DIHEDRAL : 15.367 4895 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4-6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK SI(111) SAGITALLY REMARK 200 FOCUSED MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29497 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.040 REMARK 200 RESOLUTION RANGE LOW (A) : 57.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 3QIP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, (NH4)2SO4, GLYCEROL, BIS REMARK 280 TRIS PROPANE, PH 6.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.75356 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.73600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.79344 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.75356 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.73600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 107.79344 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 VAL A 0 REMARK 465 LYS A 66 REMARK 465 ASP A 67 REMARK 465 GLY A 555 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 LYS B 70 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 111 95.67 -68.00 REMARK 500 MET A 184 -122.96 52.75 REMARK 500 ILE A 270 -42.10 -140.41 REMARK 500 VAL A 276 11.95 -142.11 REMARK 500 PHE A 346 -7.88 71.88 REMARK 500 MET B 184 -121.99 53.54 REMARK 500 PRO B 217 -175.02 -58.31 REMARK 500 MET B 230 -154.21 -110.75 REMARK 500 LYS B 347 74.26 -118.70 REMARK 500 VAL B 423 7.54 -68.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD2 REMARK 620 2 ASP A 549 OD1 101.5 REMARK 620 3 F95 A 602 O1 101.7 156.6 REMARK 620 4 F95 A 602 O2 167.9 75.1 81.7 REMARK 620 5 HOH A 702 O 88.7 95.1 82.9 80.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD1 REMARK 620 2 GLU A 478 OE2 89.4 REMARK 620 3 ASP A 498 OD1 99.3 96.8 REMARK 620 4 ASP A 498 OD2 91.8 157.6 61.0 REMARK 620 5 F95 A 602 O1 89.4 113.5 148.6 88.8 REMARK 620 6 F95 A 602 O3 156.9 82.1 103.0 104.2 74.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NVP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F95 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 604 DBREF 5HBM A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 5HBM B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 5HBM MET A -1 UNP P03366 INITIATING METHIONINE SEQADV 5HBM VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 5HBM ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 5HBM ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 5HBM SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 5HBM GLY B 0 UNP P03366 EXPRESSION TAG SEQADV 5HBM SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 429 GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU SEQRES 2 B 429 LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO SEQRES 3 B 429 LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS SEQRES 4 B 429 THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY SEQRES 5 B 429 PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS SEQRES 6 B 429 LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE SEQRES 7 B 429 ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL SEQRES 8 B 429 GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS SEQRES 9 B 429 LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SEQRES 10 B 429 SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA SEQRES 11 B 429 PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE SEQRES 12 B 429 ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SEQRES 13 B 429 SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU SEQRES 14 B 429 GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR SEQRES 15 B 429 GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU SEQRES 16 B 429 ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN SEQRES 17 B 429 HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS SEQRES 18 B 429 HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU SEQRES 19 B 429 LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU SEQRES 20 B 429 PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS SEQRES 21 B 429 LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO SEQRES 22 B 429 GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY SEQRES 23 B 429 THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU SEQRES 24 B 429 ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS SEQRES 25 B 429 GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP SEQRES 26 B 429 LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP SEQRES 27 B 429 THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS SEQRES 28 B 429 THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN SEQRES 29 B 429 ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR SEQRES 30 B 429 THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE SEQRES 31 B 429 LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP SEQRES 32 B 429 THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU SEQRES 33 B 429 PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET NVP A 601 20 HET F95 A 602 17 HET MN A 603 1 HET MN A 604 1 HETNAM NVP 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2- HETNAM 2 NVP B:2',3'-E][1,4]DIAZEPIN-6-ONE HETNAM F95 (7,8-DIHYDROXY-2-OXO-2H-CHROMEN-4-YL)ACETIC ACID HETNAM MN MANGANESE (II) ION HETSYN NVP NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE FORMUL 3 NVP C15 H14 N4 O FORMUL 4 F95 C11 H8 O6 FORMUL 5 MN 2(MN 2+) FORMUL 7 HOH *2(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ALA A 114 VAL A 118 5 5 HELIX 5 AA5 ASP A 121 ALA A 129 5 9 HELIX 6 AA6 SER A 134 GLU A 138 5 5 HELIX 7 AA7 GLY A 155 ASN A 175 1 21 HELIX 8 AA8 GLU A 194 ARG A 211 1 18 HELIX 9 AA9 THR A 253 SER A 268 1 16 HELIX 10 AB1 VAL A 276 LEU A 282 1 7 HELIX 11 AB2 THR A 296 LEU A 310 1 15 HELIX 12 AB3 ASN A 363 GLY A 384 1 22 HELIX 13 AB4 GLN A 394 TYR A 405 1 12 HELIX 14 AB5 THR A 473 ASP A 488 1 16 HELIX 15 AB6 SER A 499 ALA A 508 1 10 HELIX 16 AB7 SER A 515 LYS A 528 1 14 HELIX 17 AB8 ILE A 542 ALA A 554 1 13 HELIX 18 AB9 THR B 27 GLU B 44 1 18 HELIX 19 AC1 PHE B 77 ARG B 83 1 7 HELIX 20 AC2 THR B 84 GLU B 89 1 6 HELIX 21 AC3 GLY B 99 LYS B 103 5 5 HELIX 22 AC4 GLY B 112 VAL B 118 5 7 HELIX 23 AC5 PHE B 124 ALA B 129 5 6 HELIX 24 AC6 SER B 134 GLU B 138 5 5 HELIX 25 AC7 LYS B 154 ASN B 175 1 22 HELIX 26 AC8 GLU B 194 TRP B 212 1 19 HELIX 27 AC9 THR B 253 SER B 268 1 16 HELIX 28 AD1 VAL B 276 LYS B 281 1 6 HELIX 29 AD2 THR B 296 LEU B 310 1 15 HELIX 30 AD3 ASN B 363 GLY B 384 1 22 HELIX 31 AD4 GLN B 394 TRP B 402 1 9 HELIX 32 AD5 THR B 403 TYR B 405 5 3 HELIX 33 AD6 PRO B 421 LEU B 425 5 5 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N PHE A 130 O TYR A 144 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 VAL A 179 TYR A 183 -1 N VAL A 179 O GLY A 190 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O TYR A 232 N TRP A 229 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 350 TYR A 354 0 SHEET 2 AA5 5 GLN A 336 TYR A 342 -1 N ILE A 341 O LYS A 350 SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N GLN A 332 O GLN A 336 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 GLN A 464 LEU A 469 0 SHEET 2 AA7 5 GLY A 453 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA7 5 GLU A 438 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA8 3 ILE B 47 LYS B 49 0 SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N PHE B 130 O TYR B 144 SHEET 1 AA9 2 VAL B 60 ILE B 63 0 SHEET 2 AA9 2 ARG B 72 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 AB1 4 VAL B 179 TYR B 183 0 SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 AB1 4 GLU B 233 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB2 5 ASN B 348 ALA B 355 0 SHEET 2 AB2 5 GLN B 336 TYR B 342 -1 N ILE B 341 O LYS B 350 SHEET 3 AB2 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB2 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 AB2 5 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391 LINK OD2 ASP A 443 MN MN A 603 1555 1555 2.18 LINK OD1 ASP A 443 MN MN A 604 1555 1555 2.16 LINK OE2 GLU A 478 MN MN A 604 1555 1555 2.13 LINK OD1 ASP A 498 MN MN A 604 1555 1555 2.14 LINK OD2 ASP A 498 MN MN A 604 1555 1555 2.17 LINK OD1 ASP A 549 MN MN A 603 1555 1555 2.15 LINK O1 F95 A 602 MN MN A 603 1555 1555 2.00 LINK O2 F95 A 602 MN MN A 603 1555 1555 2.26 LINK O1 F95 A 602 MN MN A 604 1555 1555 2.06 LINK O3 F95 A 602 MN MN A 604 1555 1555 2.52 LINK MN MN A 603 O HOH A 702 1555 1555 2.24 CISPEP 1 PRO A 225 PRO A 226 0 -0.15 CISPEP 2 PRO A 420 PRO A 421 0 0.48 SITE 1 AC1 12 PRO A 95 LEU A 100 LYS A 101 VAL A 106 SITE 2 AC1 12 VAL A 179 TYR A 181 TYR A 188 GLY A 190 SITE 3 AC1 12 PHE A 227 TRP A 229 LEU A 234 TYR A 318 SITE 1 AC2 11 GLU A 28 ASP A 443 GLU A 478 ASP A 498 SITE 2 AC2 11 SER A 499 HIS A 539 ASP A 549 MN A 603 SITE 3 AC2 11 MN A 604 HOH A 701 HOH A 702 SITE 1 AC3 6 ASP A 443 ASP A 498 ASP A 549 F95 A 602 SITE 2 AC3 6 MN A 604 HOH A 702 SITE 1 AC4 5 ASP A 443 GLU A 478 ASP A 498 F95 A 602 SITE 2 AC4 5 MN A 603 CRYST1 103.931 69.472 219.344 90.00 100.62 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009622 0.000000 0.001803 0.00000 SCALE2 0.000000 0.014394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004638 0.00000