HEADER RNA 03-JAN-16 5HBX TITLE RNA PRIMER-TEMPLATE COMPLEX WITH 2-METHYLIMIDAZOLE-ACTIVATED MONOMER TITLE 2 ANALOGUE-2 BINDING SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3'); COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,C.P.TAM,J.W.SZOSTAK REVDAT 5 27-SEP-23 5HBX 1 REMARK REVDAT 4 20-NOV-19 5HBX 1 REMARK REVDAT 3 27-SEP-17 5HBX 1 REMARK REVDAT 2 18-JAN-17 5HBX 1 JRNL REVDAT 1 07-DEC-16 5HBX 0 JRNL AUTH W.ZHANG,C.P.TAM,J.WANG,J.W.SZOSTAK JRNL TITL UNUSUAL BASE-PAIRING INTERACTIONS IN MONOMER-TEMPLATE JRNL TITL 2 COMPLEXES. JRNL REF ACS CENT SCI V. 2 916 2016 JRNL REFN ESSN 2374-7943 JRNL PMID 28058281 JRNL DOI 10.1021/ACSCENTSCI.6B00278 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1361 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1188 REMARK 3 HETEROGEN ATOMS : 232 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.567 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1576 ; 0.026 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 708 ; 0.041 ; 0.024 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2432 ; 2.770 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1700 ; 3.869 ; 3.269 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 816 ; 0.018 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 296 ; 0.002 ; 0.022 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1576 ; 3.730 ; 3.030 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1577 ; 3.729 ; 3.035 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2433 ; 5.728 ; 4.529 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2244 ; 8.675 ;28.276 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2231 ; 8.695 ;28.303 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NONE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.050 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DHC REMARK 200 REMARK 200 REMARK: A DIAMOND SHAPE CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE, MAGNESIUM CHLORIDE REMARK 280 HEXAHYDRATE,0.05 M TRIS HYDROCHLORIDE PH 7.5,10% V/V (+/-)-2- REMARK 280 METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 213 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 220 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 221 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 222 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 216 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 223 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 211 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 220 O HOH B 224 2775 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LCC A 1 O3' LCC A 2 P 0.083 REMARK 500 LCG A 4 O3' A A 5 P 0.089 REMARK 500 LCC B 2 O3' LCA B 3 P 0.072 REMARK 500 LCC C 2 O3' LCA C 3 P 0.090 REMARK 500 LCC D 1 O3' LCC D 2 P 0.092 REMARK 500 LCA D 3 O3' LCG D 4 P 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LCC A 1 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 LCA A 3 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 A A 5 O3' - P - OP2 ANGL. DEV. = 9.1 DEGREES REMARK 500 LCA B 3 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 LCG B 4 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 A B 10 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 G B 11 O5' - P - OP2 ANGL. DEV. = -6.8 DEGREES REMARK 500 LCA C 3 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 G D 11 O5' - P - OP2 ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG D 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HBW RELATED DB: PDB REMARK 900 RELATED ID: 5HBY RELATED DB: PDB DBREF 5HBX A 1 14 PDB 5HBX 5HBX 1 14 DBREF 5HBX B 1 14 PDB 5HBX 5HBX 1 14 DBREF 5HBX C 1 14 PDB 5HBX 5HBX 1 14 DBREF 5HBX D 1 14 PDB 5HBX 5HBX 1 14 SEQRES 1 A 14 LCC LCC LCA LCG A C U U A A G U C SEQRES 2 A 14 U SEQRES 1 B 14 LCC LCC LCA LCG A C U U A A G U C SEQRES 2 B 14 U SEQRES 1 C 14 LCC LCC LCA LCG A C U U A A G U C SEQRES 2 C 14 U SEQRES 1 D 14 LCC LCC LCA LCG A C U U A A G U C SEQRES 2 D 14 U HET LCC A 1 19 HET LCC A 2 22 HET LCA A 3 23 HET LCG A 4 24 HET LCC B 1 19 HET LCC B 2 22 HET LCA B 3 23 HET LCG B 4 24 HET LCC C 1 19 HET LCC C 2 22 HET LCA C 3 23 HET LCG C 4 24 HET LCC D 1 19 HET LCC D 2 22 HET LCA D 3 23 HET LCG D 4 24 HET PZG A 101 29 HET PZG A 102 29 HET PZG B 101 29 HET PZG B 102 29 HET PZG C 101 29 HET PZG C 102 29 HET PZG D 101 29 HET PZG D 102 29 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCA [(1R,3R,4R,7S)-7-HYDROXY-3-(ADENIN-9-YL)-2,5- HETNAM 2 LCA DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCA PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM PZG [(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYLIDENE- HETNAM 2 PZG 1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2- HETNAM 3 PZG YL]METHOXY-(3-METHYL-1~{H}-PYRAZOL-4-YL)PHOSPHINIC HETNAM 4 PZG ACID FORMUL 1 LCC 8(C11 H16 N3 O8 P) FORMUL 1 LCA 4(C11 H14 N5 O7 P) FORMUL 1 LCG 4(C11 H14 N5 O8 P) FORMUL 5 PZG 8(C14 H18 N7 O7 P) FORMUL 13 HOH *91(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.69 LINK O3' LCC A 2 P LCA A 3 1555 1555 1.67 LINK O3' LCA A 3 P LCG A 4 1555 1555 1.67 LINK O3' LCG A 4 P A A 5 1555 1555 1.70 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.67 LINK O3' LCC B 2 P LCA B 3 1555 1555 1.68 LINK O3' LCA B 3 P LCG B 4 1555 1555 1.67 LINK O3' LCG B 4 P A B 5 1555 1555 1.63 LINK O3' LCC C 1 P LCC C 2 1555 1555 1.66 LINK O3' LCC C 2 P LCA C 3 1555 1555 1.70 LINK O3' LCA C 3 P LCG C 4 1555 1555 1.65 LINK O3' LCG C 4 P A C 5 1555 1555 1.67 LINK O3' LCC D 1 P LCC D 2 1555 1555 1.70 LINK O3' LCC D 2 P LCA D 3 1555 1555 1.67 LINK O3' LCA D 3 P LCG D 4 1555 1555 1.71 LINK O3' LCG D 4 P A D 5 1555 1555 1.65 SITE 1 AC1 5 LCC A 2 LCA A 3 PZG A 102 U B 14 SITE 2 AC1 5 LCC C 1 SITE 1 AC2 6 LCC A 1 LCC A 2 PZG A 101 HOH A 201 SITE 2 AC2 6 U B 14 LCC C 1 SITE 1 AC3 5 U A 14 LCC B 2 LCA B 3 PZG B 102 SITE 2 AC3 5 C C 13 SITE 1 AC4 7 U A 14 LCC B 1 LCC B 2 PZG B 101 SITE 2 AC4 7 U C 12 C C 13 LCC D 1 SITE 1 AC5 5 LCC A 1 LCC C 2 LCA C 3 PZG C 102 SITE 2 AC5 5 U D 14 SITE 1 AC6 7 LCC A 1 LCC C 1 LCC C 2 PZG C 101 SITE 2 AC6 7 HOH C 202 C D 13 U D 14 SITE 1 AC7 5 C A 13 U C 14 LCC D 2 LCA D 3 SITE 2 AC7 5 PZG D 102 SITE 1 AC8 7 U A 12 C A 13 LCC B 1 U C 14 SITE 2 AC8 7 LCC D 1 LCC D 2 PZG D 101 CRYST1 43.545 43.545 83.996 90.00 90.00 120.00 P 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022965 0.013259 0.000000 0.00000 SCALE2 0.000000 0.026517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011905 0.00000 HETATM 1 O5' LCC A 1 -4.414 31.728 2.650 1.00 32.75 O HETATM 2 C5' LCC A 1 -3.065 31.234 2.554 1.00 30.71 C HETATM 3 C4' LCC A 1 -2.169 32.446 2.273 1.00 33.12 C HETATM 4 O4' LCC A 1 -2.539 33.421 1.227 1.00 31.84 O HETATM 5 C1' LCC A 1 -1.541 34.550 1.551 1.00 30.54 C HETATM 6 N1 LCC A 1 -2.344 35.761 1.517 1.00 29.39 N HETATM 7 C6 LCC A 1 -3.757 35.675 1.552 1.00 27.05 C HETATM 8 C5 LCC A 1 -4.499 36.844 1.421 1.00 30.38 C HETATM 9 C5M LCC A 1 -5.887 36.849 1.439 1.00 36.62 C HETATM 10 C4 LCC A 1 -3.793 38.015 1.233 1.00 29.53 C HETATM 11 N4 LCC A 1 -4.493 39.133 1.109 1.00 34.87 N HETATM 12 N3 LCC A 1 -2.439 38.022 1.217 1.00 28.23 N HETATM 13 C2 LCC A 1 -1.706 36.943 1.329 1.00 27.19 C HETATM 14 O2 LCC A 1 -0.450 37.051 1.347 1.00 24.99 O HETATM 15 C3' LCC A 1 -1.986 33.359 3.443 1.00 30.42 C HETATM 16 C2' LCC A 1 -0.902 34.162 2.795 1.00 31.22 C HETATM 17 O2' LCC A 1 0.084 33.084 2.485 1.00 34.04 O HETATM 18 O3' LCC A 1 -1.527 32.774 4.650 1.00 35.48 O HETATM 19 C6' LCC A 1 -0.731 31.924 2.051 1.00 33.82 C HETATM 20 O5' LCC A 2 -0.970 34.677 6.281 1.00 27.45 O HETATM 21 C5' LCC A 2 0.432 34.786 6.451 1.00 27.78 C HETATM 22 C4' LCC A 2 0.643 36.228 5.956 1.00 24.61 C HETATM 23 O4' LCC A 2 0.018 36.621 4.724 1.00 23.87 O HETATM 24 C1' LCC A 2 -0.035 38.047 4.772 1.00 24.11 C HETATM 25 N1 LCC A 2 -1.440 38.478 4.703 1.00 23.98 N HETATM 26 C6 LCC A 2 -2.487 37.557 4.860 1.00 22.56 C HETATM 27 C5 LCC A 2 -3.799 37.966 4.772 1.00 24.64 C HETATM 28 C5M LCC A 2 -4.889 37.040 4.932 1.00 25.95 C HETATM 29 C4 LCC A 2 -4.045 39.300 4.517 1.00 25.36 C HETATM 30 N4 LCC A 2 -5.355 39.617 4.445 1.00 26.30 N HETATM 31 N3 LCC A 2 -3.034 40.215 4.371 1.00 26.69 N HETATM 32 C2 LCC A 2 -1.736 39.803 4.462 1.00 22.62 C HETATM 33 O2 LCC A 2 -0.859 40.659 4.295 1.00 24.53 O HETATM 34 C3' LCC A 2 0.037 37.239 6.862 1.00 21.59 C HETATM 35 C2' LCC A 2 0.546 38.368 6.141 1.00 24.11 C HETATM 36 O2' LCC A 2 1.965 38.089 6.079 1.00 25.44 O HETATM 37 O3' LCC A 2 0.624 37.104 8.178 1.00 21.99 O HETATM 38 C6' LCC A 2 2.132 36.619 5.841 1.00 28.83 C HETATM 39 P LCC A 2 -1.877 33.247 6.234 1.00 32.90 P HETATM 40 O1P LCC A 2 -1.278 32.347 7.237 1.00 29.69 O HETATM 41 O2P LCC A 2 -3.284 33.606 6.242 1.00 32.83 O HETATM 42 P LCA A 3 -0.038 37.765 9.556 1.00 27.46 P HETATM 43 O1P LCA A 3 0.706 37.332 10.799 1.00 27.57 O HETATM 44 O5' LCA A 3 0.149 39.346 9.251 1.00 22.89 O HETATM 45 C5' LCA A 3 1.449 39.886 9.225 1.00 22.19 C HETATM 46 C3' LCA A 3 0.417 42.191 9.730 1.00 20.59 C HETATM 47 C6' LCA A 3 2.626 42.184 8.873 1.00 21.49 C HETATM 48 N9 LCA A 3 -1.428 42.686 7.550 1.00 20.43 N HETATM 49 C8 LCA A 3 -2.096 41.520 7.537 1.00 20.63 C HETATM 50 C4 LCA A 3 -2.305 43.675 7.290 1.00 20.34 C HETATM 51 N7 LCA A 3 -3.408 41.791 7.371 1.00 21.33 N HETATM 52 C5 LCA A 3 -3.533 43.148 7.151 1.00 19.73 C HETATM 53 C6 LCA A 3 -4.589 43.952 6.905 1.00 18.85 C HETATM 54 C2' LCA A 3 0.563 43.395 8.953 1.00 19.95 C HETATM 55 N6 LCA A 3 -5.774 43.459 6.765 1.00 20.96 N HETATM 56 C4' LCA A 3 1.322 41.384 8.853 1.00 20.62 C HETATM 57 C1' LCA A 3 0.086 42.893 7.675 1.00 22.70 C HETATM 58 C2 LCA A 3 -3.250 45.765 6.958 1.00 17.72 C HETATM 59 N1 LCA A 3 -4.512 45.262 6.792 1.00 18.44 N HETATM 60 O4' LCA A 3 0.671 41.533 7.593 1.00 22.04 O HETATM 61 O2P LCA A 3 -1.534 37.610 9.578 1.00 26.86 O HETATM 62 N3 LCA A 3 -2.101 45.013 7.186 1.00 19.68 N HETATM 63 O3' LCA A 3 0.961 42.346 11.025 1.00 20.95 O HETATM 64 O2' LCA A 3 2.025 43.565 8.902 1.00 21.41 O HETATM 65 P LCG A 4 0.140 42.332 12.480 1.00 22.64 P HETATM 66 OP1 LCG A 4 1.119 42.274 13.535 1.00 23.99 O HETATM 67 O5' LCG A 4 -0.595 43.789 12.359 1.00 20.13 O HETATM 68 C5' LCG A 4 0.257 44.961 12.349 1.00 18.41 C HETATM 69 C3' LCG A 4 -1.832 46.221 12.826 1.00 17.64 C HETATM 70 C6' LCG A 4 -0.036 47.524 11.955 1.00 19.93 C HETATM 71 N9 LCG A 4 -3.619 45.906 10.456 1.00 19.05 N HETATM 72 C8 LCG A 4 -3.626 44.561 10.534 1.00 21.51 C HETATM 73 C4 LCG A 4 -4.843 46.308 10.068 1.00 20.92 C HETATM 74 N7 LCG A 4 -4.829 44.101 10.209 1.00 19.68 N HETATM 75 C5 LCG A 4 -5.600 45.223 9.898 1.00 21.81 C HETATM 76 C6 LCG A 4 -6.886 45.387 9.494 1.00 20.82 C HETATM 77 C2' LCG A 4 -2.406 47.343 12.111 1.00 20.03 C HETATM 78 O6 LCG A 4 -7.691 44.453 9.302 1.00 21.80 O HETATM 79 C4' LCG A 4 -0.663 46.121 12.003 1.00 18.62 C HETATM 80 C1' LCG A 4 -2.466 46.751 10.702 1.00 18.85 C HETATM 81 C2 LCG A 4 -6.529 47.731 9.478 1.00 18.10 C HETATM 82 N1 LCG A 4 -7.359 46.664 9.316 1.00 18.53 N HETATM 83 O4' LCG A 4 -1.298 45.907 10.677 1.00 19.33 O HETATM 84 OP2 LCG A 4 -1.029 41.379 12.454 1.00 20.91 O HETATM 85 N2 LCG A 4 -6.939 48.999 9.253 1.00 19.24 N HETATM 86 N3 LCG A 4 -5.294 47.564 9.884 1.00 19.54 N HETATM 87 O2' LCG A 4 -1.396 48.353 12.062 1.00 21.05 O HETATM 88 O3' LCG A 4 -1.407 46.539 14.200 1.00 20.74 O