HEADER HYDROLASE 04-JAN-16 5HC0 TITLE STRUCTURE OF ESTERASE EST22 WITH P-NITROPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOLYTIC ENZYME; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ESTERASE, EST22, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,J.HUANG REVDAT 2 08-NOV-23 5HC0 1 REMARK REVDAT 1 18-JAN-17 5HC0 0 JRNL AUTH J.HUANG,Y.Y.HUO,R.JI,S.KUANG,C.JI,X.W.XU,J.LI JRNL TITL STRUCTURAL INSIGHTS OF A HORMONE SENSITIVE LIPASE HOMOLOGUE JRNL TITL 2 EST22. JRNL REF SCI REP V. 6 28550 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27328716 JRNL DOI 10.1038/SREP28550 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 62736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3321 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3215 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2534 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 483 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.761 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2685 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2486 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3647 ; 2.393 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5751 ; 1.214 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 6.319 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;35.248 ;24.561 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;11.488 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.329 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3115 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 581 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1384 ; 1.589 ; 1.313 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1382 ; 1.568 ; 1.310 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1736 ; 2.145 ; 1.963 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1737 ; 2.145 ; 1.964 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1301 ; 3.088 ; 1.586 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1300 ; 3.073 ; 1.581 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1907 ; 4.525 ; 2.272 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3657 ; 8.446 ;13.945 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3658 ; 8.445 ;13.952 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HC4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, PH 5.5, 0.2M CA(AC)2, 20% REMARK 280 PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.91150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.91150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -7.08608 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.11604 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 920 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 23 REMARK 465 LEU A 24 REMARK 465 GLY A 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 596 O HOH A 815 1.23 REMARK 500 O CYS A 286 O HOH A 501 1.27 REMARK 500 O HOH A 633 O HOH A 798 1.37 REMARK 500 C CYS A 286 O HOH A 501 1.44 REMARK 500 O HOH A 576 O HOH A 729 1.46 REMARK 500 OD1 ASP A 74 O HOH A 502 1.53 REMARK 500 O HOH A 646 O HOH A 752 1.56 REMARK 500 C3 GOL A 405 O HOH A 753 1.67 REMARK 500 O HOH A 617 O HOH A 624 1.80 REMARK 500 O HOH A 630 O HOH A 835 1.80 REMARK 500 O HOH A 808 O HOH A 815 1.82 REMARK 500 CD1 LEU A 299 O HOH A 866 1.87 REMARK 500 O HOH A 634 O HOH A 812 1.90 REMARK 500 O HOH A 904 O HOH A 971 1.91 REMARK 500 O HOH A 555 O HOH A 580 1.94 REMARK 500 O HOH A 520 O HOH A 728 1.97 REMARK 500 CG LEU A 299 O HOH A 866 1.98 REMARK 500 O3 NPO A 402 O HOH A 503 1.99 REMARK 500 NE2 GLN A 203 O HOH A 504 2.02 REMARK 500 CD ARG A 121 O HOH A 513 2.03 REMARK 500 O HOH A 578 O HOH A 938 2.03 REMARK 500 O HOH A 505 O HOH A 523 2.04 REMARK 500 O1 GOL A 403 O HOH A 505 2.06 REMARK 500 O HOH A 617 O HOH A 969 2.06 REMARK 500 O HOH A 651 O HOH A 869 2.06 REMARK 500 O HOH A 513 O HOH A 857 2.07 REMARK 500 OG SER A 129 O HOH A 506 2.08 REMARK 500 N ASP A 287 O HOH A 501 2.09 REMARK 500 O HOH A 638 O HOH A 897 2.10 REMARK 500 O HOH A 769 O HOH A 905 2.13 REMARK 500 CD2 LEU A 299 O HOH A 866 2.13 REMARK 500 O HOH A 578 O HOH A 732 2.13 REMARK 500 O HOH A 729 O HOH A 955 2.14 REMARK 500 OD1 ASP A 208 O HOH A 507 2.14 REMARK 500 O HOH A 798 O HOH A 864 2.15 REMARK 500 O HOH A 516 O HOH A 851 2.17 REMARK 500 O HOH A 728 O HOH A 885 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 511 O HOH A 682 4546 1.25 REMARK 500 OG1 THR A 96 OE2 GLU A 227 1565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 28 N GLY A 28 CA -0.115 REMARK 500 GLU A 34 CD GLU A 34 OE1 0.070 REMARK 500 CYS A 59 CB CYS A 59 SG -0.145 REMARK 500 TYR A 116 CZ TYR A 116 CE2 -0.080 REMARK 500 TYR A 117 CE1 TYR A 117 CZ -0.083 REMARK 500 GLU A 254 CG GLU A 254 CD 0.112 REMARK 500 GLU A 254 CD GLU A 254 OE1 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 173 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 241 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 GLU A 254 CG - CD - OE1 ANGL. DEV. = 12.3 DEGREES REMARK 500 ASP A 287 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 PHE A 296 CB - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 302 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ILE A 324 CG1 - CB - CG2 ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 113 175.83 82.59 REMARK 500 LEU A 143 -53.14 -133.66 REMARK 500 SER A 146 -153.40 -80.93 REMARK 500 SER A 188 -120.51 65.11 REMARK 500 CYS A 217 55.56 29.94 REMARK 500 LEU A 239 -57.81 74.86 REMARK 500 CYS A 286 47.59 -102.98 REMARK 500 PHE A 322 69.61 -116.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS A 286 10.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 982 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 983 DISTANCE = 6.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NPO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NPO A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HC2 RELATED DB: PDB REMARK 900 RELATED ID: 5HC3 RELATED DB: PDB REMARK 900 RELATED ID: 5HC4 RELATED DB: PDB REMARK 900 RELATED ID: 5HC5 RELATED DB: PDB DBREF 5HC0 A 1 344 UNP H6BDX1 H6BDX1_9BACT 1 344 SEQADV 5HC0 MET A -20 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 GLY A -19 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 SER A -18 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 SER A -17 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 HIS A -16 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 HIS A -15 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 HIS A -14 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 HIS A -13 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 HIS A -12 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 HIS A -11 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 HIS A -10 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 SER A -9 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 SER A -8 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 GLY A -7 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 LEU A -6 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 VAL A -5 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 PRO A -4 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 ARG A -3 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 GLY A -2 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 SER A -1 UNP H6BDX1 EXPRESSION TAG SEQADV 5HC0 HIS A 0 UNP H6BDX1 EXPRESSION TAG SEQRES 1 A 365 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 365 GLY LEU VAL PRO ARG GLY SER HIS MET THR ASN LYS ILE SEQRES 3 A 365 ALA GLU ASP PRO ARG ILE ASP PRO ARG ILE LYS ALA ILE SEQRES 4 A 365 PHE SER GLY MET ASP LEU GLY GLY GLY GLY ASP VAL GLU SEQRES 5 A 365 SER ARG GLU ALA MET LEU GLU ALA ALA SER SER GLU GLU SEQRES 6 A 365 ALA THR ALA VAL ARG ASP GLY LEU ARG VAL PHE LEU ASP SEQRES 7 A 365 ALA CYS ASP ASN GLU GLU ILE ALA PRO SER ALA GLY LEU SEQRES 8 A 365 LYS ILE GLU ASP TYR GLU PHE THR SER GLU PRO ASP GLY SEQRES 9 A 365 ASN ILE ALA LYS ILE GLN TYR ILE ARG PRO ASP SER THR SEQRES 10 A 365 ASP LYS LEU PRO CYS VAL TYR TYR ILE HIS GLY GLY GLY SEQRES 11 A 365 MET GLN SER LEU SER CYS TYR TYR GLY ASN TYR ARG ALA SEQRES 12 A 365 TRP GLY LYS ILE ILE ALA SER ASN GLY VAL ALA VAL ALA SEQRES 13 A 365 MET VAL GLU PHE ARG ASN ALA LEU VAL PRO SER ALA LEU SEQRES 14 A 365 PRO GLU VAL ALA PRO TYR PRO ALA GLY LEU ASN ASP CYS SEQRES 15 A 365 VAL SER GLY VAL LYS TRP VAL ALA SER HIS ALA ASP GLU SEQRES 16 A 365 LEU GLY ILE ASP ALA SER ARG ILE ILE ILE ALA GLY GLU SEQRES 17 A 365 SER GLY GLY GLY ASN LEU THR LEU ALA ALA GLY LEU ARG SEQRES 18 A 365 LEU LYS GLN GLU GLY SER GLN ASP LEU ILE GLN GLY LEU SEQRES 19 A 365 TYR ALA LEU CYS PRO TYR ILE ALA GLY SER TRP PRO SER SEQRES 20 A 365 GLU ASP SER PRO SER SER THR GLU ASN ASN GLY ILE LEU SEQRES 21 A 365 LEU ASP LEU HIS ASN ASN GLN GLY ALA MET GLY TYR GLY SEQRES 22 A 365 ILE GLU ALA TYR GLU MET ARG ASP PRO LEU ALA TRP PRO SEQRES 23 A 365 GLY PHE ALA THR GLU GLU ASP VAL SER GLY LEU VAL PRO SEQRES 24 A 365 THR PHE ILE SER VAL ASN GLU CYS ASP PRO LEU ARG ASP SEQRES 25 A 365 GLU GLY ILE ASN PHE TYR ARG LEU LEU LEU ARG ALA GLY SEQRES 26 A 365 VAL SER ALA LYS CYS ARG GLN VAL MET GLY THR ILE HIS SEQRES 27 A 365 GLY THR GLU ILE PHE PRO ILE ALA CYS PRO ASP VAL SER SEQRES 28 A 365 ARG ASP THR ALA ALA SER ILE ALA ASN PHE CYS LYS GLY SEQRES 29 A 365 GLY HET GOL A 401 6 HET NPO A 402 10 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET ACY A 406 4 HET NPO A 407 10 HETNAM GOL GLYCEROL HETNAM NPO P-NITROPHENOL HETNAM ACY ACETIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 4(C3 H8 O3) FORMUL 3 NPO 2(C6 H5 N O3) FORMUL 7 ACY C2 H4 O2 FORMUL 9 HOH *483(H2 O) HELIX 1 AA1 ASP A 12 SER A 20 1 9 HELIX 2 AA2 SER A 32 SER A 41 1 10 HELIX 3 AA3 SER A 42 ALA A 58 1 17 HELIX 4 AA4 TYR A 117 SER A 129 1 13 HELIX 5 AA5 PRO A 155 HIS A 171 1 17 HELIX 6 AA6 HIS A 171 GLY A 176 1 6 HELIX 7 AA7 SER A 188 GLY A 205 1 18 HELIX 8 AA8 SER A 206 ILE A 210 5 5 HELIX 9 AA9 SER A 229 ASN A 235 1 7 HELIX 10 AB1 ASN A 245 MET A 258 1 14 HELIX 11 AB2 TRP A 264 ALA A 268 5 5 HELIX 12 AB3 THR A 269 SER A 274 1 6 HELIX 13 AB4 LEU A 289 ALA A 303 1 15 HELIX 14 AB5 GLY A 318 PHE A 322 5 5 HELIX 15 AB6 CYS A 326 GLY A 343 1 18 SHEET 1 AA1 8 LEU A 70 THR A 78 0 SHEET 2 AA1 8 ILE A 85 PRO A 93 -1 O TYR A 90 N GLU A 73 SHEET 3 AA1 8 ALA A 133 GLU A 138 -1 O GLU A 138 N LYS A 87 SHEET 4 AA1 8 LEU A 99 ILE A 105 1 N VAL A 102 O ALA A 133 SHEET 5 AA1 8 ILE A 177 GLU A 187 1 O ILE A 183 N TYR A 103 SHEET 6 AA1 8 GLY A 212 LEU A 216 1 O LEU A 216 N GLY A 186 SHEET 7 AA1 8 THR A 279 CYS A 286 1 O PHE A 280 N LEU A 213 SHEET 8 AA1 8 ALA A 307 ILE A 316 1 O THR A 315 N CYS A 286 CISPEP 1 GLU A 80 PRO A 81 0 14.05 CISPEP 2 TYR A 154 PRO A 155 0 0.51 CISPEP 3 TRP A 224 PRO A 225 0 -5.34 SITE 1 AC1 9 GLU A 80 ASN A 159 VAL A 162 SER A 163 SITE 2 AC1 9 LYS A 166 ARG A 200 GLU A 204 HOH A 607 SITE 3 AC1 9 HOH A 741 SITE 1 AC2 4 ILE A 18 VAL A 54 PHE A 55 HOH A 503 SITE 1 AC3 12 ILE A 183 GLN A 211 PRO A 278 PHE A 340 SITE 2 AC3 12 HOH A 505 HOH A 512 HOH A 523 HOH A 593 SITE 3 AC3 12 HOH A 650 HOH A 723 HOH A 733 HOH A 765 SITE 1 AC4 9 TYR A 219 TRP A 224 LEU A 242 ASN A 244 SITE 2 AC4 9 GLN A 246 GLY A 247 ACY A 406 HOH A 517 SITE 3 AC4 9 HOH A 718 SITE 1 AC5 12 LYS A 166 GLU A 204 SER A 206 TYR A 256 SITE 2 AC5 12 GLU A 257 ARG A 259 HOH A 511 HOH A 519 SITE 3 AC5 12 HOH A 682 HOH A 726 HOH A 753 HOH A 797 SITE 1 AC6 7 GLY A 108 GLY A 109 SER A 188 GOL A 404 SITE 2 AC6 7 HOH A 509 HOH A 528 HOH A 901 SITE 1 AC7 9 LEU A 113 TYR A 120 GLU A 187 SER A 188 SITE 2 AC7 9 HIS A 317 ILE A 321 HOH A 509 HOH A 515 SITE 3 AC7 9 HOH A 575 CRYST1 121.823 57.220 54.578 90.00 97.46 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008209 0.000000 0.001074 0.00000 SCALE2 0.000000 0.017476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018479 0.00000