HEADER HYDROLASE 04-JAN-16 5HC1 TITLE STRUCTURE OF EAV NSP11 H141A MUTANT AT 3.10A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 11; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUINE ARTERITIS VIRUS BUCYRUS; SOURCE 3 ORGANISM_COMMON: EAV; SOURCE 4 ORGANISM_TAXID: 299386; SOURCE 5 STRAIN: BUCYRUS; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NSP11, EQUINE ARTERITIS VIRUS, ENDORIBONUCLEASE, NONSTRUCTURAL KEYWDS 2 PROTEIN 11, NIDOVIRUS, NF-KAPPAB, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.F.ZHANG,Z.Z.CHEN REVDAT 5 08-NOV-23 5HC1 1 REMARK REVDAT 4 27-SEP-17 5HC1 1 REMARK REVDAT 3 18-JAN-17 5HC1 1 JRNL REVDAT 2 16-NOV-16 5HC1 1 JRNL REVDAT 1 12-OCT-16 5HC1 0 JRNL AUTH M.ZHANG,X.LI,Z.DENG,Z.CHEN,Y.LIU,Y.GAO,W.WU,Z.CHEN JRNL TITL STRUCTURAL BIOLOGY OF THE ARTERIVIRUS NSP11 JRNL TITL 2 ENDORIBONUCLEASES. JRNL REF J. VIROL. V. 91 2017 JRNL REFN ESSN 1098-5514 JRNL PMID 27795409 JRNL DOI 10.1128/JVI.01309-16 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 19651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1052 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1397 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : 1.20000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.485 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.371 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.013 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6860 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6242 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9379 ; 1.283 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14385 ; 0.938 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 870 ; 7.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;32.637 ;23.551 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 972 ;17.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.864 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1025 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7841 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1580 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3498 ; 2.135 ; 6.535 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3497 ; 2.135 ; 6.535 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4362 ; 3.633 ; 9.797 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4363 ; 3.632 ; 9.797 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3362 ; 1.808 ; 6.685 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3359 ; 1.808 ; 6.685 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5016 ; 3.121 ; 9.959 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7386 ; 6.069 ;52.351 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7383 ; 6.068 ;52.361 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19651 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 5EYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 64.56800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.87100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.63400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 64.56800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.87100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.63400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 64.56800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.87100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.63400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 64.56800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.87100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.63400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -1 REMARK 465 GLU A 219 REMARK 465 VAL B 137 REMARK 465 GLY B 138 REMARK 465 ALA C -1 REMARK 465 GLY C 139 REMARK 465 SER C 140 REMARK 465 ALA D -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 1 OG REMARK 470 LYS A 3 CE NZ REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 SER A 63 OG REMARK 470 ASP A 89 OD2 REMARK 470 GLU A 131 OE1 OE2 REMARK 470 ILE A 132 CG2 REMARK 470 ASN A 133 CG OD1 ND2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 SER A 140 OG REMARK 470 VAL A 217 CG1 CG2 REMARK 470 GLN A 218 CG CD OE1 NE2 REMARK 470 LYS B 3 CE NZ REMARK 470 ILE B 4 CD1 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 SER B 63 OG REMARK 470 VAL B 217 CG1 CG2 REMARK 470 GLU B 219 CG CD OE1 OE2 REMARK 470 LYS C 3 CG CD CE NZ REMARK 470 ARG C 43 CG CD NE CZ NH1 NH2 REMARK 470 SER C 63 OG REMARK 470 LEU C 129 CG CD1 CD2 REMARK 470 ASN C 133 CG OD1 ND2 REMARK 470 LYS C 134 CD CE NZ REMARK 470 SER C 135 OG REMARK 470 THR C 136 OG1 CG2 REMARK 470 VAL C 137 CG1 CG2 REMARK 470 ASP C 155 CG OD1 OD2 REMARK 470 LEU C 159 CG CD1 CD2 REMARK 470 VAL C 160 CG1 CG2 REMARK 470 LYS C 170 CE NZ REMARK 470 VAL C 217 CG1 CG2 REMARK 470 GLU C 219 CG CD OE1 OE2 REMARK 470 LYS D 3 CG CD CE NZ REMARK 470 ARG D 43 CG CD NE CZ NH1 NH2 REMARK 470 SER D 63 OG REMARK 470 ASN D 133 CG OD1 ND2 REMARK 470 LYS D 134 CG CD CE NZ REMARK 470 SER D 135 OG REMARK 470 ASP D 155 CG OD1 OD2 REMARK 470 VAL D 157 CG1 CG2 REMARK 470 VAL D 160 CG1 CG2 REMARK 470 SER D 163 OG REMARK 470 LYS D 167 CG CD CE NZ REMARK 470 LYS D 170 CG CD CE NZ REMARK 470 ASN D 212 CG OD1 ND2 REMARK 470 VAL D 217 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 53.46 -112.33 REMARK 500 ASP A 21 -51.91 -127.39 REMARK 500 CYS A 128 -58.52 -167.82 REMARK 500 ILE A 132 -10.26 86.07 REMARK 500 CYS A 173 -159.48 -162.16 REMARK 500 ALA A 213 -80.58 -125.07 REMARK 500 CYS B 128 -74.14 -78.85 REMARK 500 ILE B 132 31.81 -142.34 REMARK 500 ALA B 213 -93.00 -144.42 REMARK 500 TYR B 216 109.27 -167.77 REMARK 500 GLN B 218 -87.92 -141.92 REMARK 500 SER C 1 88.22 -161.93 REMARK 500 VAL C 55 -62.89 -103.10 REMARK 500 CYS C 128 -149.37 -79.51 REMARK 500 LEU C 129 -109.93 -80.35 REMARK 500 ILE C 132 -75.13 -96.75 REMARK 500 ASN C 133 -79.55 -131.45 REMARK 500 TYR C 147 41.85 -93.68 REMARK 500 PRO C 153 -86.48 -105.49 REMARK 500 ASP C 155 100.30 66.25 REMARK 500 VAL C 160 92.48 -59.94 REMARK 500 ALA C 213 -66.73 -163.04 REMARK 500 GLN C 218 -110.45 -132.42 REMARK 500 VAL D 55 -52.91 -124.68 REMARK 500 LYS D 134 65.01 62.25 REMARK 500 SER D 140 79.41 56.50 REMARK 500 PRO D 153 -99.42 -77.51 REMARK 500 ALA D 154 138.01 -172.97 REMARK 500 ASP D 155 95.35 62.59 REMARK 500 VAL D 160 86.98 -57.42 REMARK 500 LYS D 167 -66.49 -142.01 REMARK 500 ALA D 172 45.74 -140.41 REMARK 500 TYR D 179 104.77 -52.97 REMARK 500 ALA D 213 -61.60 -141.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 340 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 341 DISTANCE = 7.02 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HBZ RELATED DB: PDB DBREF 5HC1 A 1 219 UNP P19811 RPOA_EAVBU 2838 3056 DBREF 5HC1 B 1 219 UNP P19811 RPOA_EAVBU 2838 3056 DBREF 5HC1 C 1 219 UNP P19811 RPOA_EAVBU 2838 3056 DBREF 5HC1 D 1 219 UNP P19811 RPOA_EAVBU 2838 3056 SEQADV 5HC1 ALA A -1 UNP P19811 EXPRESSION TAG SEQADV 5HC1 GLY A 0 UNP P19811 EXPRESSION TAG SEQADV 5HC1 ALA A 141 UNP P19811 HIS 2978 ENGINEERED MUTATION SEQADV 5HC1 ALA B -1 UNP P19811 EXPRESSION TAG SEQADV 5HC1 GLY B 0 UNP P19811 EXPRESSION TAG SEQADV 5HC1 ALA B 141 UNP P19811 HIS 2978 ENGINEERED MUTATION SEQADV 5HC1 ALA C -1 UNP P19811 EXPRESSION TAG SEQADV 5HC1 GLY C 0 UNP P19811 EXPRESSION TAG SEQADV 5HC1 ALA C 141 UNP P19811 HIS 2978 ENGINEERED MUTATION SEQADV 5HC1 ALA D -1 UNP P19811 EXPRESSION TAG SEQADV 5HC1 GLY D 0 UNP P19811 EXPRESSION TAG SEQADV 5HC1 ALA D 141 UNP P19811 HIS 2978 ENGINEERED MUTATION SEQRES 1 A 221 ALA GLY SER ASN LYS ILE SER CYS LEU PRO ARG VAL ALA SEQRES 2 A 221 GLN ASN LEU GLY TYR HIS TYR SER PRO ASP LEU PRO GLY SEQRES 3 A 221 PHE CYS PRO ILE PRO LYS GLU LEU ALA GLU HIS TRP PRO SEQRES 4 A 221 VAL VAL SER ASN ASP ARG TYR PRO ASN CYS LEU GLN ILE SEQRES 5 A 221 THR LEU GLN GLN VAL CYS GLU LEU SER LYS PRO CYS SER SEQRES 6 A 221 ALA GLY TYR MET VAL GLY GLN SER VAL PHE VAL GLN THR SEQRES 7 A 221 PRO GLY VAL THR SER TYR TRP LEU THR GLU TRP VAL ASP SEQRES 8 A 221 GLY LYS ALA ARG ALA LEU PRO ASP SER LEU PHE SER SER SEQRES 9 A 221 GLY ARG PHE GLU THR ASN SER ARG ALA PHE LEU ASP GLU SEQRES 10 A 221 ALA GLU GLU LYS PHE ALA ALA ALA HIS PRO HIS ALA CYS SEQRES 11 A 221 LEU GLY GLU ILE ASN LYS SER THR VAL GLY GLY SER ALA SEQRES 12 A 221 PHE ILE PHE SER GLN TYR LEU PRO PRO LEU LEU PRO ALA SEQRES 13 A 221 ASP ALA VAL ALA LEU VAL GLY ALA SER LEU ALA GLY LYS SEQRES 14 A 221 ALA ALA LYS ALA ALA CYS SER VAL VAL ASP VAL TYR ALA SEQRES 15 A 221 PRO SER PHE GLU PRO TYR LEU HIS PRO GLU THR LEU SER SEQRES 16 A 221 ARG VAL TYR LYS ILE MET ILE ASP PHE LYS PRO CYS ARG SEQRES 17 A 221 LEU MET VAL TRP ARG ASN ALA THR PHE TYR VAL GLN GLU SEQRES 1 B 221 ALA GLY SER ASN LYS ILE SER CYS LEU PRO ARG VAL ALA SEQRES 2 B 221 GLN ASN LEU GLY TYR HIS TYR SER PRO ASP LEU PRO GLY SEQRES 3 B 221 PHE CYS PRO ILE PRO LYS GLU LEU ALA GLU HIS TRP PRO SEQRES 4 B 221 VAL VAL SER ASN ASP ARG TYR PRO ASN CYS LEU GLN ILE SEQRES 5 B 221 THR LEU GLN GLN VAL CYS GLU LEU SER LYS PRO CYS SER SEQRES 6 B 221 ALA GLY TYR MET VAL GLY GLN SER VAL PHE VAL GLN THR SEQRES 7 B 221 PRO GLY VAL THR SER TYR TRP LEU THR GLU TRP VAL ASP SEQRES 8 B 221 GLY LYS ALA ARG ALA LEU PRO ASP SER LEU PHE SER SER SEQRES 9 B 221 GLY ARG PHE GLU THR ASN SER ARG ALA PHE LEU ASP GLU SEQRES 10 B 221 ALA GLU GLU LYS PHE ALA ALA ALA HIS PRO HIS ALA CYS SEQRES 11 B 221 LEU GLY GLU ILE ASN LYS SER THR VAL GLY GLY SER ALA SEQRES 12 B 221 PHE ILE PHE SER GLN TYR LEU PRO PRO LEU LEU PRO ALA SEQRES 13 B 221 ASP ALA VAL ALA LEU VAL GLY ALA SER LEU ALA GLY LYS SEQRES 14 B 221 ALA ALA LYS ALA ALA CYS SER VAL VAL ASP VAL TYR ALA SEQRES 15 B 221 PRO SER PHE GLU PRO TYR LEU HIS PRO GLU THR LEU SER SEQRES 16 B 221 ARG VAL TYR LYS ILE MET ILE ASP PHE LYS PRO CYS ARG SEQRES 17 B 221 LEU MET VAL TRP ARG ASN ALA THR PHE TYR VAL GLN GLU SEQRES 1 C 221 ALA GLY SER ASN LYS ILE SER CYS LEU PRO ARG VAL ALA SEQRES 2 C 221 GLN ASN LEU GLY TYR HIS TYR SER PRO ASP LEU PRO GLY SEQRES 3 C 221 PHE CYS PRO ILE PRO LYS GLU LEU ALA GLU HIS TRP PRO SEQRES 4 C 221 VAL VAL SER ASN ASP ARG TYR PRO ASN CYS LEU GLN ILE SEQRES 5 C 221 THR LEU GLN GLN VAL CYS GLU LEU SER LYS PRO CYS SER SEQRES 6 C 221 ALA GLY TYR MET VAL GLY GLN SER VAL PHE VAL GLN THR SEQRES 7 C 221 PRO GLY VAL THR SER TYR TRP LEU THR GLU TRP VAL ASP SEQRES 8 C 221 GLY LYS ALA ARG ALA LEU PRO ASP SER LEU PHE SER SER SEQRES 9 C 221 GLY ARG PHE GLU THR ASN SER ARG ALA PHE LEU ASP GLU SEQRES 10 C 221 ALA GLU GLU LYS PHE ALA ALA ALA HIS PRO HIS ALA CYS SEQRES 11 C 221 LEU GLY GLU ILE ASN LYS SER THR VAL GLY GLY SER ALA SEQRES 12 C 221 PHE ILE PHE SER GLN TYR LEU PRO PRO LEU LEU PRO ALA SEQRES 13 C 221 ASP ALA VAL ALA LEU VAL GLY ALA SER LEU ALA GLY LYS SEQRES 14 C 221 ALA ALA LYS ALA ALA CYS SER VAL VAL ASP VAL TYR ALA SEQRES 15 C 221 PRO SER PHE GLU PRO TYR LEU HIS PRO GLU THR LEU SER SEQRES 16 C 221 ARG VAL TYR LYS ILE MET ILE ASP PHE LYS PRO CYS ARG SEQRES 17 C 221 LEU MET VAL TRP ARG ASN ALA THR PHE TYR VAL GLN GLU SEQRES 1 D 221 ALA GLY SER ASN LYS ILE SER CYS LEU PRO ARG VAL ALA SEQRES 2 D 221 GLN ASN LEU GLY TYR HIS TYR SER PRO ASP LEU PRO GLY SEQRES 3 D 221 PHE CYS PRO ILE PRO LYS GLU LEU ALA GLU HIS TRP PRO SEQRES 4 D 221 VAL VAL SER ASN ASP ARG TYR PRO ASN CYS LEU GLN ILE SEQRES 5 D 221 THR LEU GLN GLN VAL CYS GLU LEU SER LYS PRO CYS SER SEQRES 6 D 221 ALA GLY TYR MET VAL GLY GLN SER VAL PHE VAL GLN THR SEQRES 7 D 221 PRO GLY VAL THR SER TYR TRP LEU THR GLU TRP VAL ASP SEQRES 8 D 221 GLY LYS ALA ARG ALA LEU PRO ASP SER LEU PHE SER SER SEQRES 9 D 221 GLY ARG PHE GLU THR ASN SER ARG ALA PHE LEU ASP GLU SEQRES 10 D 221 ALA GLU GLU LYS PHE ALA ALA ALA HIS PRO HIS ALA CYS SEQRES 11 D 221 LEU GLY GLU ILE ASN LYS SER THR VAL GLY GLY SER ALA SEQRES 12 D 221 PHE ILE PHE SER GLN TYR LEU PRO PRO LEU LEU PRO ALA SEQRES 13 D 221 ASP ALA VAL ALA LEU VAL GLY ALA SER LEU ALA GLY LYS SEQRES 14 D 221 ALA ALA LYS ALA ALA CYS SER VAL VAL ASP VAL TYR ALA SEQRES 15 D 221 PRO SER PHE GLU PRO TYR LEU HIS PRO GLU THR LEU SER SEQRES 16 D 221 ARG VAL TYR LYS ILE MET ILE ASP PHE LYS PRO CYS ARG SEQRES 17 D 221 LEU MET VAL TRP ARG ASN ALA THR PHE TYR VAL GLN GLU FORMUL 5 HOH *125(H2 O) HELIX 1 AA1 LEU A 7 LEU A 14 1 8 HELIX 2 AA2 GLU A 31 HIS A 35 5 5 HELIX 3 AA3 ARG A 104 ASN A 108 5 5 HELIX 4 AA4 ASP A 114 HIS A 124 1 11 HELIX 5 AA5 PRO A 125 CYS A 128 5 4 HELIX 6 AA6 TYR A 179 LEU A 187 5 9 HELIX 7 AA7 LEU B 7 LEU B 14 1 8 HELIX 8 AA8 PRO B 29 TRP B 36 5 8 HELIX 9 AA9 ARG B 104 ASN B 108 5 5 HELIX 10 AB1 ASP B 114 HIS B 124 1 11 HELIX 11 AB2 TYR B 179 HIS B 188 5 10 HELIX 12 AB3 LEU C 7 GLY C 15 1 9 HELIX 13 AB4 GLU C 31 TRP C 36 5 6 HELIX 14 AB5 GLY C 103 ASN C 108 1 6 HELIX 15 AB6 ASP C 114 HIS C 124 1 11 HELIX 16 AB7 TYR C 179 LEU C 187 5 9 HELIX 17 AB8 LEU D 7 ASN D 13 1 7 HELIX 18 AB9 GLU D 31 TRP D 36 5 6 HELIX 19 AC1 GLY D 103 ASN D 108 1 6 HELIX 20 AC2 ASP D 114 HIS D 124 1 11 HELIX 21 AC3 HIS D 124 GLY D 130 1 7 HELIX 22 AC4 TYR D 179 LEU D 187 5 9 SHEET 1 AA1 3 ILE A 4 CYS A 6 0 SHEET 2 AA1 3 TYR A 66 VAL A 68 -1 O MET A 67 N SER A 5 SHEET 3 AA1 3 SER A 71 PHE A 73 -1 O PHE A 73 N TYR A 66 SHEET 1 AA2 2 TYR A 18 SER A 19 0 SHEET 2 AA2 2 CYS A 26 PRO A 27 1 O CYS A 26 N SER A 19 SHEET 1 AA3 4 VAL A 38 SER A 40 0 SHEET 2 AA3 4 CYS A 47 THR A 51 1 O LEU A 48 N VAL A 38 SHEET 3 AA3 4 TYR A 82 VAL A 88 -1 O TRP A 87 N CYS A 47 SHEET 4 AA3 4 LYS A 60 CYS A 62 -1 N LYS A 60 O LEU A 84 SHEET 1 AA4 4 VAL A 38 SER A 40 0 SHEET 2 AA4 4 CYS A 47 THR A 51 1 O LEU A 48 N VAL A 38 SHEET 3 AA4 4 TYR A 82 VAL A 88 -1 O TRP A 87 N CYS A 47 SHEET 4 AA4 4 LYS A 91 ARG A 93 -1 O LYS A 91 N VAL A 88 SHEET 1 AA5 2 ALA A 141 PHE A 142 0 SHEET 2 AA5 2 VAL A 175 VAL A 176 1 O VAL A 176 N ALA A 141 SHEET 1 AA6 3 SER A 193 ILE A 200 0 SHEET 2 AA6 3 LYS A 203 TRP A 210 -1 O CYS A 205 N ILE A 198 SHEET 3 AA6 3 THR A 214 GLN A 218 -1 O TYR A 216 N MET A 208 SHEET 1 AA7 3 ILE B 4 CYS B 6 0 SHEET 2 AA7 3 TYR B 66 VAL B 68 -1 O MET B 67 N SER B 5 SHEET 3 AA7 3 SER B 71 PHE B 73 -1 O PHE B 73 N TYR B 66 SHEET 1 AA8 2 TYR B 18 SER B 19 0 SHEET 2 AA8 2 CYS B 26 PRO B 27 1 O CYS B 26 N SER B 19 SHEET 1 AA9 4 VAL B 38 SER B 40 0 SHEET 2 AA9 4 CYS B 47 THR B 51 1 O ILE B 50 N SER B 40 SHEET 3 AA9 4 TYR B 82 VAL B 88 -1 O TRP B 83 N THR B 51 SHEET 4 AA9 4 LYS B 60 CYS B 62 -1 N LYS B 60 O LEU B 84 SHEET 1 AB1 4 VAL B 38 SER B 40 0 SHEET 2 AB1 4 CYS B 47 THR B 51 1 O ILE B 50 N SER B 40 SHEET 3 AB1 4 TYR B 82 VAL B 88 -1 O TRP B 83 N THR B 51 SHEET 4 AB1 4 LYS B 91 ARG B 93 -1 O LYS B 91 N VAL B 88 SHEET 1 AB2 3 SER B 140 PHE B 142 0 SHEET 2 AB2 3 CYS B 173 VAL B 176 1 O VAL B 176 N ALA B 141 SHEET 3 AB2 3 VAL B 157 LEU B 159 1 N ALA B 158 O CYS B 173 SHEET 1 AB3 3 SER B 193 ILE B 200 0 SHEET 2 AB3 3 LYS B 203 TRP B 210 -1 O CYS B 205 N ILE B 198 SHEET 3 AB3 3 PHE B 215 VAL B 217 -1 O TYR B 216 N MET B 208 SHEET 1 AB4 3 ILE C 4 CYS C 6 0 SHEET 2 AB4 3 TYR C 66 VAL C 68 -1 O MET C 67 N SER C 5 SHEET 3 AB4 3 SER C 71 PHE C 73 -1 O PHE C 73 N TYR C 66 SHEET 1 AB5 2 TYR C 18 SER C 19 0 SHEET 2 AB5 2 CYS C 26 PRO C 27 1 O CYS C 26 N SER C 19 SHEET 1 AB6 4 VAL C 38 SER C 40 0 SHEET 2 AB6 4 CYS C 47 THR C 51 1 O ILE C 50 N SER C 40 SHEET 3 AB6 4 TRP C 83 VAL C 88 -1 O THR C 85 N GLN C 49 SHEET 4 AB6 4 LYS C 60 PRO C 61 -1 N LYS C 60 O LEU C 84 SHEET 1 AB7 4 VAL C 38 SER C 40 0 SHEET 2 AB7 4 CYS C 47 THR C 51 1 O ILE C 50 N SER C 40 SHEET 3 AB7 4 TRP C 83 VAL C 88 -1 O THR C 85 N GLN C 49 SHEET 4 AB7 4 LYS C 91 ARG C 93 -1 O LYS C 91 N VAL C 88 SHEET 1 AB8 2 VAL C 157 LEU C 159 0 SHEET 2 AB8 2 CYS C 173 VAL C 175 -1 O VAL C 175 N VAL C 157 SHEET 1 AB9 2 ALA C 162 LEU C 164 0 SHEET 2 AB9 2 ALA C 168 LYS C 170 -1 O ALA C 168 N LEU C 164 SHEET 1 AC1 3 SER C 193 ILE C 200 0 SHEET 2 AC1 3 LYS C 203 TRP C 210 -1 O VAL C 209 N ARG C 194 SHEET 3 AC1 3 THR C 214 VAL C 217 -1 O TYR C 216 N MET C 208 SHEET 1 AC2 3 ILE D 4 CYS D 6 0 SHEET 2 AC2 3 TYR D 66 VAL D 68 -1 O MET D 67 N SER D 5 SHEET 3 AC2 3 SER D 71 PHE D 73 -1 O PHE D 73 N TYR D 66 SHEET 1 AC3 2 TYR D 18 SER D 19 0 SHEET 2 AC3 2 CYS D 26 PRO D 27 1 O CYS D 26 N SER D 19 SHEET 1 AC4 4 VAL D 38 SER D 40 0 SHEET 2 AC4 4 CYS D 47 THR D 51 1 O ILE D 50 N SER D 40 SHEET 3 AC4 4 TRP D 83 TRP D 87 -1 O TRP D 87 N CYS D 47 SHEET 4 AC4 4 LYS D 60 PRO D 61 -1 N LYS D 60 O LEU D 84 SHEET 1 AC5 4 VAL D 38 SER D 40 0 SHEET 2 AC5 4 CYS D 47 THR D 51 1 O ILE D 50 N SER D 40 SHEET 3 AC5 4 TRP D 83 TRP D 87 -1 O TRP D 87 N CYS D 47 SHEET 4 AC5 4 ALA D 92 ARG D 93 -1 O ARG D 93 N GLU D 86 SHEET 1 AC6 2 VAL D 157 LEU D 159 0 SHEET 2 AC6 2 CYS D 173 VAL D 175 -1 O VAL D 175 N VAL D 157 SHEET 1 AC7 2 ALA D 162 LEU D 164 0 SHEET 2 AC7 2 ALA D 168 LYS D 170 -1 O ALA D 168 N LEU D 164 SHEET 1 AC8 3 SER D 193 ILE D 200 0 SHEET 2 AC8 3 LYS D 203 TRP D 210 -1 O LYS D 203 N ILE D 200 SHEET 3 AC8 3 THR D 214 GLN D 218 -1 O GLN D 218 N ARG D 206 CISPEP 1 GLU B 131 ILE B 132 0 -8.13 CRYST1 129.136 133.742 145.268 90.00 90.00 90.00 I 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007744 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006884 0.00000