HEADER TRANSFERASE 04-JAN-16 5HC8 TITLE CRYSTAL STRUCTURE OF LAVANDULYL DIPHOSPHATE SYNTHASE FROM LAVANDULA X TITLE 2 INTERMEDIA IN COMPLEX WITH DIMETHYLALLYL DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRENYLTRANSFERENCE FOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAVANDULA LANATA; SOURCE 3 ORGANISM_TAXID: 39330; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET46EK/LIC KEYWDS SUBSTRATE BINDING, PRENYLTRANSFERASE, SUBSTRATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.X.LIU,W.D.LIU,J.GAO,Y.Y.ZHENG,C.C.CHEN,R.T.GUO REVDAT 4 08-NOV-23 5HC8 1 JRNL REMARK LINK REVDAT 3 13-APR-16 5HC8 1 JRNL REVDAT 2 16-MAR-16 5HC8 1 JRNL REVDAT 1 02-MAR-16 5HC8 0 JRNL AUTH M.X.LIU,C.C.CHEN,L.CHEN,X.S.XIAO,Y.Y.ZHENG,J.W.HUANG, JRNL AUTH 2 W.D.LIU,T.P.KO,Y.S.CHENG,X.X.FENG,E.OLDFIELD,R.T.GUO,Y.H.MA JRNL TITL STRUCTURE AND FUNCTION OF A "HEAD-TO-MIDDLE" JRNL TITL 2 PRENYLTRANSFERASE: LAVANDULYL DIPHOSPHATE SYNTHASE JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 55 4721 2016 JRNL REFN ESSN 1521-3773 JRNL PMID 26922900 JRNL DOI 10.1002/ANIE.201600656 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1705 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.18000 REMARK 3 B22 (A**2) : 3.17000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.421 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1978 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1864 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2677 ; 2.068 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4270 ; 1.061 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ; 6.330 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;39.101 ;23.700 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 334 ;17.435 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.551 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2230 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 487 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 943 ; 3.170 ; 3.450 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 942 ; 3.170 ; 3.448 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1177 ; 4.350 ; 5.159 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5HC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25038 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1V7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, GLYCEROL, PEG400, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.35100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.35100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.10550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.11750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.10550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.11750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.35100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.10550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.11750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.35100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.10550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.11750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -54.21100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -39.35100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 56 REMARK 465 ALA A 57 REMARK 465 GLY A 58 REMARK 465 ALA A 59 REMARK 465 GLU A 60 REMARK 465 THR A 61 REMARK 465 GLU A 62 REMARK 465 ILE A 63 REMARK 465 ARG A 300 REMARK 465 LYS A 301 REMARK 465 GLY A 302 REMARK 465 ILE A 303 REMARK 465 HIS A 304 REMARK 465 GLU A 305 REMARK 465 ALA A 306 REMARK 465 SER A 307 REMARK 465 ALA A 308 REMARK 465 TRP A 309 REMARK 465 SER A 310 REMARK 465 HIS A 311 REMARK 465 PRO A 312 REMARK 465 GLN A 313 REMARK 465 PHE A 314 REMARK 465 GLU A 315 REMARK 465 LYS A 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5 PIS A 402 O HOH A 501 1.50 REMARK 500 O HOH A 501 O HOH A 514 1.85 REMARK 500 O HOH A 589 O HOH A 598 2.17 REMARK 500 O HOH A 617 O HOH A 633 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 637 O HOH A 637 3554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 238 CB - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 THR A 271 CB - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 LEU A 284 CB - CG - CD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 65 -69.21 45.71 REMARK 500 SER A 145 -75.57 -100.36 REMARK 500 PHE A 240 60.52 -115.39 REMARK 500 ALA A 250 5.93 85.24 REMARK 500 ASN A 257 32.74 70.45 REMARK 500 PHE A 258 -160.45 -72.90 REMARK 500 LEU A 260 -63.66 -126.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 76 OD1 REMARK 620 2 PIS A 402 O2 85.4 REMARK 620 3 ISY A 405 O7 99.2 172.7 REMARK 620 4 HOH A 513 O 89.5 93.4 92.3 REMARK 620 5 HOH A 514 O 173.4 88.0 87.3 90.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PIS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 61G A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ISY A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HC6 RELATED DB: PDB REMARK 900 RELATED ID: 5HC7 RELATED DB: PDB DBREF 5HC8 A 56 316 PDB 5HC8 5HC8 56 316 SEQRES 1 A 261 LEU ALA GLY ALA GLU THR GLU ILE ASP GLU VAL THR PRO SEQRES 2 A 261 ASN HIS VAL ALA ILE ILE ILE ASP GLY HIS ARG LYS TRP SEQRES 3 A 261 ALA LYS SER ARG GLY VAL THR VAL GLN GLU GLY HIS GLN SEQRES 4 A 261 THR GLY VAL ASN ASN TRP LYS HIS ILE ILE SER ARG ALA SEQRES 5 A 261 SER GLN LEU GLY ILE LYS LEU LEU THR ILE TRP ALA LEU SEQRES 6 A 261 SER PRO GLN ASN PHE ASN ARG SER LYS MET GLU VAL ASP SEQRES 7 A 261 PHE LEU MET ARG ILE TYR GLU ASP PHE LEU ARG SER ASP SEQRES 8 A 261 VAL LYS GLU LEU VAL THR SER GLN GLN ASP ILE GLN PHE SEQRES 9 A 261 SER ALA ILE GLY ASP LYS SER ARG LEU PRO GLU TYR LEU SEQRES 10 A 261 GLN ASP ALA ILE SER TYR ALA GLU GLY LEU SER GLN ALA SEQRES 11 A 261 ASN LYS GLY MET HIS PHE ILE LEU ALA VAL ALA TYR GLY SEQRES 12 A 261 GLY ARG GLU ASP ILE VAL GLU ALA ALA ARG LYS ILE ALA SEQRES 13 A 261 ALA LYS VAL GLU HIS GLY ILE LEU ARG PRO ASP ASP ILE SEQRES 14 A 261 ASP GLU ALA THR PHE GLU GLN HIS LEU MET THR ASN ILE SEQRES 15 A 261 THR LYS PHE PRO SER PRO ASP LEU LEU ILE ARG ALA ALA SEQRES 16 A 261 GLY GLU GLN ARG LEU SER ASN PHE PHE LEU TRP GLN LEU SEQRES 17 A 261 PRO PHE THR GLU PHE TYR PHE THR PRO LYS LEU PHE PRO SEQRES 18 A 261 ASP PHE GLY GLU ALA ASP LEU LEU ASP ALA LEU ALA SER SEQRES 19 A 261 TYR ARG CYS ARG TYR ARG GLY PHE GLY GLU ARG LYS GLY SEQRES 20 A 261 ILE HIS GLU ALA SER ALA TRP SER HIS PRO GLN PHE GLU SEQRES 21 A 261 LYS HET MG A 401 1 HET PIS A 402 9 HET 61G A 403 5 HET SO4 A 404 5 HET ISY A 405 14 HETNAM MG MAGNESIUM ION HETNAM PIS TRIHYDROGEN THIODIPHOSPHATE HETNAM 61G 2-METHYLBUTA-1,3-DIENE HETNAM SO4 SULFATE ION HETNAM ISY 3-METHYLBUT-3-ENYLSULFANYL(PHOSPHONOOXY)PHOSPHINIC ACID HETSYN PIS THIOPYROPHOSPHATE HETSYN ISY ISOPENTYL S-THIOLODIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 PIS H3 O6 P2 S 1- FORMUL 4 61G C5 H8 FORMUL 5 SO4 O4 S 2- FORMUL 6 ISY C5 H12 O6 P2 S FORMUL 7 HOH *136(H2 O) HELIX 1 AA1 GLY A 77 GLY A 86 1 10 HELIX 2 AA2 THR A 88 LEU A 110 1 23 HELIX 3 AA3 PRO A 122 ARG A 127 5 6 HELIX 4 AA4 SER A 128 SER A 145 1 18 HELIX 5 AA5 SER A 145 SER A 153 1 9 HELIX 6 AA6 ASP A 164 LEU A 168 5 5 HELIX 7 AA7 PRO A 169 GLN A 184 1 16 HELIX 8 AA8 GLY A 198 HIS A 216 1 19 HELIX 9 AA9 ARG A 220 ILE A 224 5 5 HELIX 10 AB1 ASP A 225 HIS A 232 1 8 HELIX 11 AB2 LEU A 233 THR A 238 5 6 HELIX 12 AB3 LEU A 274 PHE A 278 5 5 HELIX 13 AB4 GLY A 279 ARG A 293 1 15 SHEET 1 AA1 6 GLN A 158 ILE A 162 0 SHEET 2 AA1 6 HIS A 190 VAL A 195 1 O PHE A 191 N GLN A 158 SHEET 3 AA1 6 LEU A 114 LEU A 120 1 N ALA A 119 O ALA A 194 SHEET 4 AA1 6 HIS A 70 ILE A 74 1 N VAL A 71 O THR A 116 SHEET 5 AA1 6 LEU A 245 ARG A 248 1 O ILE A 247 N ILE A 74 SHEET 6 AA1 6 GLU A 267 PHE A 270 1 O GLU A 267 N LEU A 246 LINK OD1 ASP A 76 MG MG A 401 1555 1555 2.12 LINK MG MG A 401 O2 PIS A 402 1555 1555 2.14 LINK MG MG A 401 O7 ISY A 405 1555 1555 2.12 LINK MG MG A 401 O HOH A 513 1555 1555 2.05 LINK MG MG A 401 O HOH A 514 1555 1555 2.24 SITE 1 AC1 5 ASP A 76 PIS A 402 ISY A 405 HOH A 513 SITE 2 AC1 5 HOH A 514 SITE 1 AC2 15 ASP A 76 GLY A 77 HIS A 78 ARG A 79 SITE 2 AC2 15 LYS A 80 HIS A 93 ARG A 127 MG A 401 SITE 3 AC2 15 61G A 403 ISY A 405 HOH A 501 HOH A 509 SITE 4 AC2 15 HOH A 513 HOH A 514 HOH A 517 SITE 1 AC3 7 HIS A 78 ALA A 119 ASN A 124 ARG A 127 SITE 2 AC3 7 TYR A 139 PIS A 402 HOH A 562 SITE 1 AC4 4 HIS A 190 THR A 238 LYS A 239 HOH A 503 SITE 1 AC5 20 ILE A 74 ILE A 75 ASP A 76 TRP A 118 SITE 2 AC5 20 SER A 121 ASN A 124 ARG A 127 ARG A 248 SITE 3 AC5 20 ARG A 254 SER A 256 GLY A 296 PHE A 297 SITE 4 AC5 20 GLY A 298 MG A 401 PIS A 402 HOH A 513 SITE 5 AC5 20 HOH A 514 HOH A 525 HOH A 531 HOH A 546 CRYST1 54.211 140.235 78.702 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007131 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012706 0.00000