HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-JAN-16 5HD7 TITLE DISSECTING THERAPEUTIC RESISTANCE TO ERK INHIBITION RAT MUTANT TITLE 2 SCH772984 IN COMPLEX WITH (3R)-1-(2-OXO-2-{4-[4-(PYRIMIDIN-2-YL) TITLE 3 PHENYL]PIPERAZIN-1-YL}ETHYL)-N-[3-(PYRIDIN-4-YL)-2H-INDAZOL-5- TITLE 4 YL]PYRROLIDINE-3-CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED KINASE 2,ERK-2, COMPND 5 MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED PROTEIN KINASE 2, COMPND 6 MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: MAPK1, ERK2, MAPK, PRKM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSFERASE, SERINE/THREONINE-PROTEIN KINASE, MAP KINASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.JHA,E.J.MORRIS,A.HRUZA,M.S.MANSUETO,G.SCHROEDER,J.ARBANAS, AUTHOR 2 D.MCMASTERS,C.R.RESTAINO,R.DAYANANTH,S.BLACK,N.L.ELSEN,A.MANNARINO, AUTHOR 3 A.COOPER,S.FAWELL,L.ZAWEL,L.JAYARAMAN,A.A.SAMATAR REVDAT 4 06-MAR-24 5HD7 1 REMARK REVDAT 3 22-NOV-17 5HD7 1 REMARK REVDAT 2 01-JUN-16 5HD7 1 JRNL REVDAT 1 24-FEB-16 5HD7 0 JRNL AUTH S.JHA,E.J.MORRIS,A.HRUZA,M.S.MANSUETO,G.K.SCHROEDER, JRNL AUTH 2 J.ARBANAS,D.MCMASTERS,C.R.RESTAINO,P.DAYANANTH,S.BLACK, JRNL AUTH 3 N.L.ELSEN,A.MANNARINO,A.COOPER,S.FAWELL,L.ZAWEL,L.JAYARAMAN, JRNL AUTH 4 A.A.SAMATAR JRNL TITL DISSECTING THERAPEUTIC RESISTANCE TO ERK INHIBITION. JRNL REF MOL.CANCER THER. V. 15 548 2016 JRNL REFN ESSN 1538-8514 JRNL PMID 26832798 JRNL DOI 10.1158/1535-7163.MCT-15-0172 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 44384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2214 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.38 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3099 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1971 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2971 REMARK 3 BIN R VALUE (WORKING SET) : 0.1955 REMARK 3 BIN FREE R VALUE : 0.2354 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.13 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 128 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2839 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.06990 REMARK 3 B22 (A**2) : -1.14600 REMARK 3 B33 (A**2) : 3.21590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.203 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.101 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.096 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.126 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.096 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5992 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10844 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1335 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 79 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 915 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5992 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : 5 ; 0.000 ; HARMONIC REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 385 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6763 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.58 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.13 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 52.7730 19.1907 18.9692 REMARK 3 T TENSOR REMARK 3 T11: -0.0240 T22: -0.0869 REMARK 3 T33: -0.0270 T12: 0.0073 REMARK 3 T13: 0.0045 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9415 L22: 0.5940 REMARK 3 L33: 0.9191 L12: -0.3751 REMARK 3 L13: -0.4885 L23: 0.1697 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.1609 S13: -0.0534 REMARK 3 S21: -0.0062 S22: -0.0648 S23: 0.0688 REMARK 3 S31: -0.0473 S32: -0.0793 S33: 0.0259 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.1.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44558 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 28.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.60400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, PH 6.4, 2.0M AMMONIUM REMARK 280 SULFATE, 5% PEG 400, 0.5% DMSO, 1% GLYEROL, 0.0005M OLOMOUCINE, REMARK 280 10 DAY SOAK WITH 500 MICROMOLAR OF NEW COMPOUND, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.49300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.71100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.49300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.71100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 TYR A 356 REMARK 465 ARG A 357 REMARK 465 SER A 358 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 -65.25 -109.06 REMARK 500 ASP A 147 42.20 -152.36 REMARK 500 ASP A 165 85.26 68.56 REMARK 500 ASN A 199 12.12 -162.37 REMARK 500 ILE A 254 -62.51 75.84 REMARK 500 LEU A 292 43.75 -95.83 REMARK 500 LEU A 292 43.75 -98.54 REMARK 500 ALA A 325 76.38 -116.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 274 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 774 DISTANCE = 5.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 38Z A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HD4 RELATED DB: PDB DBREF 5HD7 A 1 358 UNP P63086 MK01_RAT 1 358 SEQADV 5HD7 ALA A -6 UNP P63086 EXPRESSION TAG SEQADV 5HD7 HIS A -5 UNP P63086 EXPRESSION TAG SEQADV 5HD7 HIS A -4 UNP P63086 EXPRESSION TAG SEQADV 5HD7 HIS A -3 UNP P63086 EXPRESSION TAG SEQADV 5HD7 HIS A -2 UNP P63086 EXPRESSION TAG SEQADV 5HD7 HIS A -1 UNP P63086 EXPRESSION TAG SEQADV 5HD7 HIS A 0 UNP P63086 EXPRESSION TAG SEQADV 5HD7 ASP A 167 UNP P63086 GLY 167 ENGINEERED MUTATION SEQRES 1 A 365 ALA HIS HIS HIS HIS HIS HIS MET ALA ALA ALA ALA ALA SEQRES 2 A 365 ALA GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL SEQRES 3 A 365 GLY PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY SEQRES 4 A 365 ALA TYR GLY MET VAL CYS SER ALA TYR ASP ASN LEU ASN SEQRES 5 A 365 LYS VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU SEQRES 6 A 365 HIS GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS SEQRES 7 A 365 ILE LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE SEQRES 8 A 365 ASN ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS SEQRES 9 A 365 ASP VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU SEQRES 10 A 365 TYR LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS SEQRES 11 A 365 ILE CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS SEQRES 12 A 365 TYR ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS SEQRES 13 A 365 PRO SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS SEQRES 14 A 365 ILE CYS ASP PHE ASP LEU ALA ARG VAL ALA ASP PRO ASP SEQRES 15 A 365 HIS ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR SEQRES 16 A 365 ARG TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS SEQRES 17 A 365 GLY TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS SEQRES 18 A 365 ILE LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO SEQRES 19 A 365 GLY LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY SEQRES 20 A 365 ILE LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE SEQRES 21 A 365 ILE ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO SEQRES 22 A 365 HIS LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN SEQRES 23 A 365 ALA ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU SEQRES 24 A 365 THR PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA SEQRES 25 A 365 LEU ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER SEQRES 26 A 365 ASP GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET SEQRES 27 A 365 GLU LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU SEQRES 28 A 365 ILE PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SEQRES 29 A 365 SER HET 38Z A 401 78 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HETNAM 38Z (3R)-1-(2-OXO-2-{4-[4-(PYRIMIDIN-2-YL)PHENYL]PIPERAZIN- HETNAM 2 38Z 1-YL}ETHYL)-N-[3-(PYRIDIN-4-YL)-2H-INDAZOL-5- HETNAM 3 38Z YL]PYRROLIDINE-3-CARBOXAMIDE HETNAM SO4 SULFATE ION FORMUL 2 38Z C33 H33 N9 O2 FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *274(H2 O) HELIX 1 AA1 HIS A 59 PHE A 76 1 18 HELIX 2 AA2 LEU A 110 GLN A 117 1 8 HELIX 3 AA3 SER A 120 ALA A 141 1 22 HELIX 4 AA4 LYS A 149 SER A 151 5 3 HELIX 5 AA5 ASP A 173 ASP A 177 5 5 HELIX 6 AA6 THR A 188 ARG A 192 5 5 HELIX 7 AA7 ALA A 193 MET A 197 5 5 HELIX 8 AA8 LYS A 205 ASN A 222 1 18 HELIX 9 AA9 HIS A 230 GLY A 243 1 14 HELIX 10 AB1 SER A 246 CYS A 252 1 7 HELIX 11 AB2 ASN A 255 LEU A 265 1 11 HELIX 12 AB3 PRO A 272 PHE A 277 1 6 HELIX 13 AB4 ASP A 281 LEU A 292 1 12 HELIX 14 AB5 GLU A 301 ALA A 307 1 7 HELIX 15 AB6 HIS A 308 GLU A 312 5 5 HELIX 16 AB7 ASP A 316 GLU A 320 5 5 HELIX 17 AB8 PRO A 337 ALA A 350 1 14 HELIX 18 AB9 ARG A 351 GLN A 353 5 3 SHEET 1 AA1 5 TYR A 23 GLY A 32 0 SHEET 2 AA1 5 GLY A 35 ASP A 42 -1 O TYR A 41 N THR A 24 SHEET 3 AA1 5 VAL A 47 ILE A 54 -1 O VAL A 49 N ALA A 40 SHEET 4 AA1 5 VAL A 99 ASP A 104 -1 O GLN A 103 N ALA A 50 SHEET 5 AA1 5 ASP A 86 ILE A 88 -1 N ILE A 88 O TYR A 100 SHEET 1 AA2 3 THR A 108 ASP A 109 0 SHEET 2 AA2 3 LEU A 153 LEU A 155 -1 O LEU A 155 N THR A 108 SHEET 3 AA2 3 LEU A 161 ILE A 163 -1 O LYS A 162 N LEU A 154 SHEET 1 AA3 2 VAL A 143 LEU A 144 0 SHEET 2 AA3 2 ARG A 170 VAL A 171 -1 O ARG A 170 N LEU A 144 SITE 1 AC1 19 ALA A 33 TYR A 34 ALA A 50 LYS A 52 SITE 2 AC1 19 ILE A 54 TYR A 62 THR A 66 GLN A 103 SITE 3 AC1 19 ASP A 104 MET A 106 GLU A 107 THR A 108 SITE 4 AC1 19 LYS A 112 LEU A 154 ASP A 165 ASP A 167 SITE 5 AC1 19 HOH A 509 HOH A 537 HOH A 640 SITE 1 AC2 7 ARG A 68 ARG A 170 VAL A 171 ASP A 330 SITE 2 AC2 7 MET A 331 GLU A 332 HOH A 522 SITE 1 AC3 5 ARG A 75 PRO A 326 PHE A 327 LYS A 328 SITE 2 AC3 5 PHE A 329 SITE 1 AC4 5 ARG A 146 ARG A 170 VAL A 186 HOH A 507 SITE 2 AC4 5 HOH A 551 SITE 1 AC5 6 TYR A 185 ARG A 189 ARG A 192 TYR A 231 SITE 2 AC5 6 HOH A 563 HOH A 662 SITE 1 AC6 7 ASN A 121 GLY A 180 LYS A 257 HOH A 573 SITE 2 AC6 7 HOH A 636 HOH A 657 HOH A 693 CRYST1 70.986 91.422 62.972 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014087 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015880 0.00000