HEADER PEPTIDE BINDING PROTEIN 05-JAN-16 5HDY TITLE THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ-3 DOMAIN (UNP RESIDUES 302-402); COMPND 5 SYNONYM: POSTSYNAPTIC DENSITY PROTEIN 95,PSD-95,SYNAPSE-ASSOCIATED COMPND 6 PROTEIN 90,SAP90; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DLG4, DLGH4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS PDZ, GLGF, DHR, ADHESION, SYNAPSE, SYNAPTIC DENSITY, PEPTIDE-BINDING KEYWDS 2 DOMAIN, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.I.WHITE,A.S.RAMAN,R.RANGANATHAN REVDAT 2 27-SEP-23 5HDY 1 REMARK REVDAT 1 11-JAN-17 5HDY 0 JRNL AUTH K.I.WHITE,A.S.RAMAN,R.RANGANATHAN JRNL TITL THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10PRE_2104 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.480 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 11130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1057 - 3.6021 0.91 1342 149 0.1647 0.2096 REMARK 3 2 3.6021 - 2.8594 0.96 1313 146 0.1770 0.1890 REMARK 3 3 2.8594 - 2.4980 0.98 1310 145 0.1852 0.2131 REMARK 3 4 2.4980 - 2.2696 0.99 1311 147 0.1877 0.2389 REMARK 3 5 2.2696 - 2.1069 0.99 1312 145 0.1877 0.2336 REMARK 3 6 2.1069 - 1.9827 1.00 1299 144 0.2078 0.2355 REMARK 3 7 1.9827 - 1.8834 0.97 1287 144 0.2429 0.2689 REMARK 3 8 1.8834 - 1.8014 0.65 842 94 0.2861 0.2963 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1135 REMARK 3 ANGLE : 1.161 1553 REMARK 3 CHIRALITY : 0.412 165 REMARK 3 PLANARITY : 0.010 220 REMARK 3 DIHEDRAL : 17.419 450 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 299:304) REMARK 3 ORIGIN FOR THE GROUP (A): 60.4359 66.7394 47.7797 REMARK 3 T TENSOR REMARK 3 T11: 0.3437 T22: 0.7685 REMARK 3 T33: 0.7607 T12: -0.1318 REMARK 3 T13: -0.0836 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 9.1108 L22: 2.2537 REMARK 3 L33: 2.6105 L12: -0.6760 REMARK 3 L13: 3.2938 L23: 1.4332 REMARK 3 S TENSOR REMARK 3 S11: 0.4408 S12: -1.0042 S13: -0.4620 REMARK 3 S21: 0.5380 S22: 0.0098 S23: 0.0668 REMARK 3 S31: 0.4611 S32: 0.2710 S33: -0.4749 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 305:317) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0084 66.1771 40.3317 REMARK 3 T TENSOR REMARK 3 T11: 0.2379 T22: 0.1311 REMARK 3 T33: 0.1642 T12: -0.0022 REMARK 3 T13: 0.0432 T23: 0.0641 REMARK 3 L TENSOR REMARK 3 L11: 4.7320 L22: 7.2170 REMARK 3 L33: 4.3988 L12: -3.1875 REMARK 3 L13: 2.5457 L23: -5.0980 REMARK 3 S TENSOR REMARK 3 S11: -0.2554 S12: -0.2435 S13: 0.1507 REMARK 3 S21: 0.4585 S22: 0.1012 S23: 0.1095 REMARK 3 S31: -0.4945 S32: 0.1519 S33: 0.1049 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 318:332) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8393 61.7921 24.6566 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.2144 REMARK 3 T33: 0.2165 T12: -0.0724 REMARK 3 T13: -0.0991 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 4.8326 L22: 0.1092 REMARK 3 L33: 4.4315 L12: 0.2250 REMARK 3 L13: 0.4619 L23: 0.6796 REMARK 3 S TENSOR REMARK 3 S11: -0.3139 S12: 0.3587 S13: 0.0390 REMARK 3 S21: -0.2114 S22: 0.0176 S23: 0.0190 REMARK 3 S31: -0.2182 S32: -0.1870 S33: -0.0138 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 333:354) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5671 63.2261 31.1067 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: 0.1010 REMARK 3 T33: 0.1367 T12: -0.0707 REMARK 3 T13: -0.0218 T23: 0.0670 REMARK 3 L TENSOR REMARK 3 L11: 2.8071 L22: 4.3842 REMARK 3 L33: 2.5928 L12: 1.8734 REMARK 3 L13: -0.7396 L23: -1.2847 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: 0.0431 S13: -0.0048 REMARK 3 S21: 0.1918 S22: -0.0344 S23: 0.2653 REMARK 3 S31: -0.0114 S32: -0.0406 S33: -0.0559 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 355:368) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9287 59.2116 34.6874 REMARK 3 T TENSOR REMARK 3 T11: 0.0039 T22: 0.1349 REMARK 3 T33: 0.3186 T12: -0.1154 REMARK 3 T13: 0.0832 T23: 0.1059 REMARK 3 L TENSOR REMARK 3 L11: 1.0959 L22: 0.5885 REMARK 3 L33: 0.7435 L12: -0.0045 REMARK 3 L13: 0.2000 L23: 0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: -0.0457 S13: 0.0060 REMARK 3 S21: 0.0800 S22: -0.0232 S23: 0.2583 REMARK 3 S31: 0.1103 S32: -0.2403 S33: -0.3301 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 369:394) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4099 61.0982 29.4384 REMARK 3 T TENSOR REMARK 3 T11: 0.1385 T22: 0.2796 REMARK 3 T33: 0.3629 T12: -0.0631 REMARK 3 T13: -0.0692 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 1.2358 L22: 0.5499 REMARK 3 L33: 1.8853 L12: -0.4567 REMARK 3 L13: 0.4368 L23: 0.6521 REMARK 3 S TENSOR REMARK 3 S11: -0.1014 S12: 0.3128 S13: -0.0250 REMARK 3 S21: -0.2053 S22: -0.0084 S23: 0.5937 REMARK 3 S31: 0.0569 S32: -0.3853 S33: 0.1233 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 395:415) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0008 50.7951 37.0345 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.1092 REMARK 3 T33: 0.1228 T12: 0.0338 REMARK 3 T13: -0.0027 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 6.2944 L22: 6.0444 REMARK 3 L33: 6.2027 L12: -0.4948 REMARK 3 L13: 1.2009 L23: 0.6459 REMARK 3 S TENSOR REMARK 3 S11: -0.2409 S12: -0.2374 S13: 0.1354 REMARK 3 S21: 0.4691 S22: 0.2643 S23: -0.2208 REMARK 3 S31: 0.2833 S32: 0.2162 S33: -0.0140 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11131 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.801 REMARK 200 RESOLUTION RANGE LOW (A) : 40.096 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.35000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52.6210 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.313 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1BFE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EQUAL AMOUNTS (1.5 MICROLITERS) OF REMARK 280 PROTEIN (9 MG/ML) AND RESERVOIR SOLUTION WERE MIXED AND REMARK 280 EQUILLIBRATED AGAINST MICROLITERS OF CRYSTALLIZATION BUFFER (1.0 REMARK 280 M SODIUM CITRATE) AT 289 K. DIAMOND-SHAPED CRYSTALS APPEARED REMARK 280 EITHER SPONTANEOUSLY OR WITH MICROSEEDING AFTER 1-5 DAYS AND REMARK 280 GREW TO 100-200 MICRONS IN LENGTH OVER SEVERAL WEEKS., PH 6.9, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.82850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.82850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.82850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.82850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.82850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.82850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 44.82850 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 44.82850 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 44.82850 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 44.82850 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 44.82850 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 44.82850 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 44.82850 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 44.82850 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 44.82850 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 44.82850 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 44.82850 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 44.82850 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 67.24275 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 22.41425 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 22.41425 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 67.24275 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 67.24275 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.24275 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 22.41425 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 22.41425 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 67.24275 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 22.41425 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 67.24275 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 22.41425 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 67.24275 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 22.41425 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 22.41425 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 22.41425 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 67.24275 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 22.41425 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 67.24275 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 67.24275 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 67.24275 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 22.41425 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 22.41425 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 67.24275 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 67.24275 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 22.41425 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 22.41425 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 22.41425 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 22.41425 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 67.24275 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 22.41425 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 67.24275 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 22.41425 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 67.24275 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 67.24275 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 67.24275 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 629 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 297 REMARK 465 SER A 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 393 O HOH A 603 1.52 REMARK 500 O HOH A 682 O HOH A 686 2.06 REMARK 500 O HOH A 603 O HOH A 668 2.08 REMARK 500 O HOH A 632 O HOH A 692 2.10 REMARK 500 O ASP A 415 O HOH A 601 2.13 REMARK 500 O HOH A 703 O HOH A 705 2.13 REMARK 500 O HOH A 715 O HOH A 717 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 320 -127.31 18.35 REMARK 500 THR A 321 6.07 -17.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 319 SER A 320 -147.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 322 11.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BFE RELATED DB: PDB REMARK 900 1BFE IS A LOWER RESOLUTION VERSION OF THIS STRUCTURE. REMARK 900 RELATED ID: 5HEB RELATED DB: PDB REMARK 900 RELATED ID: 5HED RELATED DB: PDB REMARK 900 RELATED ID: 5HET RELATED DB: PDB REMARK 900 RELATED ID: 5HEY RELATED DB: PDB REMARK 900 RELATED ID: 5HF1 RELATED DB: PDB REMARK 900 RELATED ID: 5HF4 RELATED DB: PDB REMARK 900 RELATED ID: 5HFB RELATED DB: PDB REMARK 900 RELATED ID: 5HFC RELATED DB: PDB REMARK 900 RELATED ID: 5HFD RELATED DB: PDB REMARK 900 RELATED ID: 5HFE RELATED DB: PDB REMARK 900 RELATED ID: 5HFF RELATED DB: PDB DBREF 5HDY A 302 402 UNP P31016 DLG4_RAT 302 402 SEQADV 5HDY GLY A 297 UNP P31016 EXPRESSION TAG SEQADV 5HDY SER A 298 UNP P31016 EXPRESSION TAG SEQADV 5HDY PRO A 299 UNP P31016 EXPRESSION TAG SEQADV 5HDY GLU A 300 UNP P31016 EXPRESSION TAG SEQADV 5HDY PHE A 301 UNP P31016 EXPRESSION TAG SEQADV 5HDY ASN A 403 UNP P31016 EXPRESSION TAG SEQADV 5HDY SER A 404 UNP P31016 EXPRESSION TAG SEQADV 5HDY ARG A 405 UNP P31016 EXPRESSION TAG SEQADV 5HDY VAL A 406 UNP P31016 EXPRESSION TAG SEQADV 5HDY ASP A 407 UNP P31016 EXPRESSION TAG SEQADV 5HDY SER A 408 UNP P31016 EXPRESSION TAG SEQADV 5HDY SER A 409 UNP P31016 EXPRESSION TAG SEQADV 5HDY GLY A 410 UNP P31016 EXPRESSION TAG SEQADV 5HDY ARG A 411 UNP P31016 EXPRESSION TAG SEQADV 5HDY ILE A 412 UNP P31016 EXPRESSION TAG SEQADV 5HDY VAL A 413 UNP P31016 EXPRESSION TAG SEQADV 5HDY THR A 414 UNP P31016 EXPRESSION TAG SEQADV 5HDY ASP A 415 UNP P31016 EXPRESSION TAG SEQRES 1 A 119 GLY SER PRO GLU PHE LEU GLY GLU GLU ASP ILE PRO ARG SEQRES 2 A 119 GLU PRO ARG ARG ILE VAL ILE HIS ARG GLY SER THR GLY SEQRES 3 A 119 LEU GLY PHE ASN ILE VAL GLY GLY GLU ASP GLY GLU GLY SEQRES 4 A 119 ILE PHE ILE SER PHE ILE LEU ALA GLY GLY PRO ALA ASP SEQRES 5 A 119 LEU SER GLY GLU LEU ARG LYS GLY ASP GLN ILE LEU SER SEQRES 6 A 119 VAL ASN GLY VAL ASP LEU ARG ASN ALA SER HIS GLU GLN SEQRES 7 A 119 ALA ALA ILE ALA LEU LYS ASN ALA GLY GLN THR VAL THR SEQRES 8 A 119 ILE ILE ALA GLN TYR LYS PRO GLU GLU TYR SER ARG PHE SEQRES 9 A 119 GLU ALA ASN SER ARG VAL ASP SER SER GLY ARG ILE VAL SEQRES 10 A 119 THR ASP HET GOL A 501 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *117(H2 O) HELIX 1 AA1 PHE A 301 GLU A 305 5 5 HELIX 2 AA2 GLY A 345 GLY A 351 1 7 HELIX 3 AA3 SER A 371 ALA A 382 1 12 HELIX 4 AA4 LYS A 393 SER A 398 1 6 SHEET 1 AA1 4 ARG A 312 HIS A 317 0 SHEET 2 AA1 4 THR A 385 TYR A 392 -1 O VAL A 386 N ILE A 316 SHEET 3 AA1 4 ASP A 357 VAL A 362 -1 N GLN A 358 O GLN A 391 SHEET 4 AA1 4 VAL A 365 ASP A 366 -1 O VAL A 365 N VAL A 362 SHEET 1 AA2 2 PHE A 325 GLY A 329 0 SHEET 2 AA2 2 ILE A 336 ILE A 341 -1 O PHE A 337 N VAL A 328 SHEET 1 AA3 2 SER A 404 VAL A 406 0 SHEET 2 AA3 2 ILE A 412 THR A 414 -1 O VAL A 413 N ARG A 405 CISPEP 1 ARG A 318 GLY A 319 0 9.79 SITE 1 AC1 4 PHE A 325 HOH A 605 HOH A 656 HOH A 677 CRYST1 89.657 89.657 89.657 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011154 0.00000