HEADER PEPTIDE BINDING PROTEIN 05-JAN-16 5HEB TITLE THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 IN COMPLEX WITH TITLE 2 A C-TERMINAL PEPTIDE DERIVED FROM CRIPT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ-3 DOMAIN (UNP RESIDUES 302-402); COMPND 5 SYNONYM: POSTSYNAPTIC DENSITY PROTEIN 95,PSD-95,SYNAPSE-ASSOCIATED COMPND 6 PROTEIN 90,SAP90; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CYSTEINE-RICH PDZ-BINDING PROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: PDZ3-BINDING DOMAIN (UNP RESIDUES 93-101); COMPND 12 SYNONYM: CYSTEINE-RICH INTERACTOR OF PDZ THREE,CYSTEINE-RICH COMPND 13 INTERACTOR OF PDZ3; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: SYNTHESIZED USING STANDARD FMOC CHEMISTRY, HPCL COMPND 16 PURIFIED, AND LYOPHILIZED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DLG4, DLGH4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 14 ORGANISM_COMMON: RAT; SOURCE 15 ORGANISM_TAXID: 10116 KEYWDS PDZ, GLGF, DHR, ADHESION, SYNAPSE, SYNAPTIC DENSITY, PEPTIDE-BINDING KEYWDS 2 DOMAIN, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.I.WHITE,A.S.RAMAN,R.RANGANATHAN REVDAT 3 27-SEP-23 5HEB 1 REMARK REVDAT 2 27-SEP-17 5HEB 1 REMARK REVDAT 1 16-NOV-16 5HEB 0 JRNL AUTH A.S.RAMAN,K.I.WHITE,R.RANGANATHAN JRNL TITL ORIGINS OF ALLOSTERY AND EVOLVABILITY IN PROTEINS: A CASE JRNL TITL 2 STUDY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 166 468 2016 JRNL REFN ISSN 0092-8674 JRNL PMID 27321669 JRNL DOI 10.1016/J.CELL.2016.05.047 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10PRE_2104 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 15082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1587 - 3.6688 1.00 1405 157 0.1675 0.1980 REMARK 3 2 3.6688 - 2.9123 1.00 1302 144 0.1621 0.1760 REMARK 3 3 2.9123 - 2.5442 1.00 1264 141 0.1651 0.1796 REMARK 3 4 2.5442 - 2.3116 1.00 1266 140 0.1598 0.1945 REMARK 3 5 2.3116 - 2.1459 1.00 1260 141 0.1593 0.1855 REMARK 3 6 2.1459 - 2.0194 1.00 1247 138 0.1643 0.2112 REMARK 3 7 2.0194 - 1.9183 1.00 1238 137 0.1585 0.1973 REMARK 3 8 1.9183 - 1.8348 1.00 1232 137 0.1655 0.1994 REMARK 3 9 1.8348 - 1.7642 1.00 1233 137 0.1749 0.1887 REMARK 3 10 1.7642 - 1.7033 0.97 1193 134 0.1948 0.2340 REMARK 3 11 1.7033 - 1.6500 0.76 933 103 0.2255 0.2873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1125 REMARK 3 ANGLE : 1.220 1539 REMARK 3 CHIRALITY : 0.053 167 REMARK 3 PLANARITY : 0.005 216 REMARK 3 DIHEDRAL : 21.811 430 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 297:378) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0235 61.7613 32.9444 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.0867 REMARK 3 T33: 0.0753 T12: 0.0001 REMARK 3 T13: -0.0042 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.6251 L22: 1.5332 REMARK 3 L33: 1.7641 L12: 0.1519 REMARK 3 L13: 0.0001 L23: -0.3984 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.0116 S13: -0.0281 REMARK 3 S21: 0.0096 S22: 0.1132 S23: -0.0168 REMARK 3 S31: -0.1025 S32: -0.1697 S33: -0.0742 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 379:415) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6795 55.8865 34.8727 REMARK 3 T TENSOR REMARK 3 T11: 0.0849 T22: 0.0743 REMARK 3 T33: 0.0607 T12: -0.0143 REMARK 3 T13: 0.0017 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.5392 L22: 2.5207 REMARK 3 L33: 2.0814 L12: -0.8715 REMARK 3 L13: 0.0012 L23: -0.2655 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: 0.0061 S13: 0.0080 REMARK 3 S21: 0.0697 S22: 0.1268 S23: -0.0887 REMARK 3 S31: 0.0873 S32: 0.0033 S33: -0.0646 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0899 52.4423 22.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.2341 T22: 0.1903 REMARK 3 T33: 0.3050 T12: -0.0605 REMARK 3 T13: -0.0392 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 3.9162 L22: 1.3060 REMARK 3 L33: 5.3364 L12: -0.1101 REMARK 3 L13: -0.8860 L23: 0.8855 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.1683 S13: -0.9001 REMARK 3 S21: -0.0420 S22: 0.1005 S23: 0.4129 REMARK 3 S31: 0.7499 S32: -0.2527 S33: -0.1301 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 289 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15083 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.147 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 61.5710 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.478 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1BE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEPTIDE WAS INCLUDED IN PROTEIN BUFFER REMARK 280 TO A FINAL MOLAR RATIO OF 2:1 RELATIVE TO PROTEIN. RESERVOIR REMARK 280 SOLUTION CONTAINED 1 M SODIUM CITRATE, PH 7.0. EQUAL AMOUNTS REMARK 280 (1.5 MICROLITERS) OF PROTEIN (9 MG/ML) AND RESERVOIR SOLUTION REMARK 280 WERE MIXED AND EQUILLIBRATED AGAINST 500 MICROLITERS OF REMARK 280 CRYSTALLIZATION BUFFER., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.88550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.88550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.88550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.88550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.88550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.88550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 44.88550 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 44.88550 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 44.88550 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 44.88550 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 44.88550 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 44.88550 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 44.88550 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 44.88550 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 44.88550 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 44.88550 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 44.88550 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 44.88550 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 67.32825 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 22.44275 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 22.44275 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 67.32825 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 67.32825 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.32825 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 22.44275 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 22.44275 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 67.32825 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 22.44275 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 67.32825 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 22.44275 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 67.32825 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 22.44275 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 22.44275 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 22.44275 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 67.32825 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 22.44275 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 67.32825 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 67.32825 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 67.32825 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 22.44275 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 22.44275 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 67.32825 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 67.32825 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 22.44275 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 22.44275 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 22.44275 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 22.44275 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 67.32825 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 22.44275 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 67.32825 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 22.44275 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 67.32825 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 67.32825 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 67.32825 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 675 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 713 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 1 REMARK 465 LYS B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 332 CG OD1 OD2 REMARK 470 ARG A 399 CD NE CZ NH1 NH2 REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 TYR B 4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 317 O HOH A 602 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 4 CA - C - N ANGL. DEV. = 14.8 DEGREES REMARK 500 TYR B 4 CA - C - N ANGL. DEV. = 15.5 DEGREES REMARK 500 TYR B 4 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 TYR B 4 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 332 6.02 92.20 REMARK 500 PHE A 340 133.16 -170.31 REMARK 500 PHE A 340 133.92 -170.31 REMARK 500 TYR B 4 -35.85 -167.17 REMARK 500 TYR B 4 -34.28 -167.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 713 DISTANCE = 6.42 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BE9 RELATED DB: PDB REMARK 900 RELATED ID: 5HDY RELATED DB: PDB REMARK 900 RELATED ID: 5HED RELATED DB: PDB REMARK 900 RELATED ID: 5HET RELATED DB: PDB REMARK 900 RELATED ID: 5HEY RELATED DB: PDB REMARK 900 RELATED ID: 5HF1 RELATED DB: PDB REMARK 900 RELATED ID: 5HF4 RELATED DB: PDB REMARK 900 RELATED ID: 5HFB RELATED DB: PDB REMARK 900 RELATED ID: 5HFC RELATED DB: PDB REMARK 900 RELATED ID: 5HFD RELATED DB: PDB REMARK 900 RELATED ID: 5HFE RELATED DB: PDB REMARK 900 RELATED ID: 5HFF RELATED DB: PDB DBREF 5HEB A 302 402 UNP P31016 DLG4_RAT 302 402 DBREF 5HEB B 1 9 UNP Q792Q4 CRIPT_RAT 93 101 SEQADV 5HEB GLY A 297 UNP P31016 EXPRESSION TAG SEQADV 5HEB SER A 298 UNP P31016 EXPRESSION TAG SEQADV 5HEB PRO A 299 UNP P31016 EXPRESSION TAG SEQADV 5HEB GLU A 300 UNP P31016 EXPRESSION TAG SEQADV 5HEB PHE A 301 UNP P31016 EXPRESSION TAG SEQADV 5HEB ASN A 403 UNP P31016 EXPRESSION TAG SEQADV 5HEB SER A 404 UNP P31016 EXPRESSION TAG SEQADV 5HEB ARG A 405 UNP P31016 EXPRESSION TAG SEQADV 5HEB VAL A 406 UNP P31016 EXPRESSION TAG SEQADV 5HEB ASP A 407 UNP P31016 EXPRESSION TAG SEQADV 5HEB SER A 408 UNP P31016 EXPRESSION TAG SEQADV 5HEB SER A 409 UNP P31016 EXPRESSION TAG SEQADV 5HEB GLY A 410 UNP P31016 EXPRESSION TAG SEQADV 5HEB ARG A 411 UNP P31016 EXPRESSION TAG SEQADV 5HEB ILE A 412 UNP P31016 EXPRESSION TAG SEQADV 5HEB VAL A 413 UNP P31016 EXPRESSION TAG SEQADV 5HEB THR A 414 UNP P31016 EXPRESSION TAG SEQADV 5HEB ASP A 415 UNP P31016 EXPRESSION TAG SEQRES 1 A 119 GLY SER PRO GLU PHE LEU GLY GLU GLU ASP ILE PRO ARG SEQRES 2 A 119 GLU PRO ARG ARG ILE VAL ILE HIS ARG GLY SER THR GLY SEQRES 3 A 119 LEU GLY PHE ASN ILE VAL GLY GLY GLU ASP GLY GLU GLY SEQRES 4 A 119 ILE PHE ILE SER PHE ILE LEU ALA GLY GLY PRO ALA ASP SEQRES 5 A 119 LEU SER GLY GLU LEU ARG LYS GLY ASP GLN ILE LEU SER SEQRES 6 A 119 VAL ASN GLY VAL ASP LEU ARG ASN ALA SER HIS GLU GLN SEQRES 7 A 119 ALA ALA ILE ALA LEU LYS ASN ALA GLY GLN THR VAL THR SEQRES 8 A 119 ILE ILE ALA GLN TYR LYS PRO GLU GLU TYR SER ARG PHE SEQRES 9 A 119 GLU ALA ASN SER ARG VAL ASP SER SER GLY ARG ILE VAL SEQRES 10 A 119 THR ASP SEQRES 1 B 9 THR LYS ASN TYR LYS GLN THR SER VAL HET GOL A 501 14 HET GOL B 101 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *122(H2 O) HELIX 1 AA1 PHE A 301 GLU A 305 5 5 HELIX 2 AA2 GLY A 345 GLY A 351 1 7 HELIX 3 AA3 SER A 371 ASN A 381 1 11 HELIX 4 AA4 LYS A 393 SER A 398 1 6 SHEET 1 AA1 4 ARG A 312 HIS A 317 0 SHEET 2 AA1 4 THR A 385 TYR A 392 -1 O ILE A 388 N ILE A 314 SHEET 3 AA1 4 ASP A 357 VAL A 362 -1 N GLN A 358 O GLN A 391 SHEET 4 AA1 4 VAL A 365 ASP A 366 -1 O VAL A 365 N VAL A 362 SHEET 1 AA2 3 ILE A 336 ILE A 341 0 SHEET 2 AA2 3 PHE A 325 GLY A 329 -1 N VAL A 328 O PHE A 337 SHEET 3 AA2 3 GLN B 6 SER B 8 -1 O THR B 7 N ILE A 327 SHEET 1 AA3 2 SER A 404 VAL A 406 0 SHEET 2 AA3 2 ILE A 412 THR A 414 -1 O VAL A 413 N ARG A 405 SITE 1 AC1 10 ILE A 341 LEU A 353 ARG A 354 ALA A 402 SITE 2 AC1 10 ASN A 403 THR A 414 ASP A 415 HOH A 630 SITE 3 AC1 10 HOH A 638 HOH A 651 SITE 1 AC2 5 GLY A 322 GLU A 373 GLN A 374 SER B 8 SITE 2 AC2 5 HOH B 201 CRYST1 89.771 89.771 89.771 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011139 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011139 0.00000