HEADER TRANSCRIPTION 06-JAN-16 5HEV TITLE CRYSTAL STRUCTURE OF THE BERYLLOFLUORIDE-ACTIVATED LIAR FROM TITLE 2 ENTEROCOCCUS FAECIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR PROTEIN VRAR; COMPND 3 CHAIN: A, F, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM SD3B-2; SOURCE 3 ORGANISM_TAXID: 1244155; SOURCE 4 GENE: D357_01142; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENTEROCOCCUS FAECIUM, LIAR, RESPONSE REGULATOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.DAVLIEVA,Y.SHAMOO REVDAT 4 27-SEP-23 5HEV 1 LINK REVDAT 3 11-DEC-19 5HEV 1 REMARK REVDAT 2 20-SEP-17 5HEV 1 REMARK REVDAT 1 16-NOV-16 5HEV 0 JRNL AUTH M.DAVLIEVA,A.TOVAR-YANEZ,K.DEBRULER,P.G.LEONARD,M.R.ZIANNI, JRNL AUTH 2 C.A.ARIAS,Y.SHAMOO JRNL TITL AN ADAPTIVE MUTATION IN ENTEROCOCCUS FAECIUM LIAR ASSOCIATED JRNL TITL 2 WITH ANTIMICROBIAL PEPTIDE RESISTANCE MIMICS PHOSPHORYLATION JRNL TITL 3 AND STABILIZES LIAR IN AN ACTIVATED STATE. JRNL REF J.MOL.BIOL. V. 428 4503 2016 JRNL REFN ISSN 0022-2836 JRNL PMID 27670715 JRNL DOI 10.1016/J.JMB.2016.09.016 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2474: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 21126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0179 - 7.4806 0.96 1603 148 0.1607 0.1838 REMARK 3 2 7.4806 - 5.9479 0.97 1638 163 0.2376 0.2493 REMARK 3 3 5.9479 - 5.1991 0.97 1597 156 0.2356 0.3043 REMARK 3 4 5.1991 - 4.7251 0.98 1644 158 0.2030 0.2531 REMARK 3 5 4.7251 - 4.3871 0.96 1614 154 0.1900 0.2473 REMARK 3 6 4.3871 - 4.1290 0.96 1605 159 0.1798 0.2335 REMARK 3 7 4.1290 - 3.9225 0.95 1583 156 0.2162 0.2913 REMARK 3 8 3.9225 - 3.7520 0.93 1508 152 0.2404 0.3220 REMARK 3 9 3.7520 - 3.6077 0.91 1567 146 0.2485 0.3071 REMARK 3 10 3.6077 - 3.4833 0.88 1487 144 0.2613 0.3411 REMARK 3 11 3.4833 - 3.3745 0.82 1341 126 0.2936 0.3508 REMARK 3 12 3.3745 - 3.2781 0.74 1217 112 0.3029 0.3606 REMARK 3 13 3.2781 - 3.1919 0.50 857 91 0.3130 0.3933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4800 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6679 REMARK 3 ANGLE : 0.569 8996 REMARK 3 CHIRALITY : 0.042 1068 REMARK 3 PLANARITY : 0.003 1145 REMARK 3 DIHEDRAL : 2.332 4170 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HEV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23488 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.83100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IF4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM FORMATE DEHYDRATE, 15 REMARK 280 % W/V POLYETHYLENE GLYCOL 3,350, PH 7.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.31633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 184.63267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 209 REMARK 465 LYS A 210 REMARK 465 LYS B 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 153 NZ LYS B 190 1.71 REMARK 500 NH1 ARG C 120 OE2 GLU C 122 1.84 REMARK 500 NZ LYS A 178 OG1 THR A 182 1.96 REMARK 500 NZ LYS B 104 F3 BEF B 302 1.99 REMARK 500 NZ LYS A 164 OE1 GLU A 172 2.00 REMARK 500 OD1 ASP A 26 NH1 ARG A 116 2.01 REMARK 500 OD1 ASP B 113 NH1 ARG B 116 2.03 REMARK 500 O GLU C 32 NZ LYS C 42 2.04 REMARK 500 OD1 ASP F 87 NZ LYS F 132 2.06 REMARK 500 OD1 ASP B 54 F2 BEF B 302 2.09 REMARK 500 OD1 ASP A 54 F3 BEF A 302 2.12 REMARK 500 OD1 ASP C 54 F3 BEF C 302 2.15 REMARK 500 OE1 GLU A 153 NZ LYS A 190 2.17 REMARK 500 OD1 ASP F 54 F1 BEF F 302 2.18 REMARK 500 NZ LYS A 77 OE1 GLN A 119 2.18 REMARK 500 OG1 THR A 82 F3 BEF A 302 2.19 REMARK 500 O GLU A 32 NZ LYS A 42 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP C 72 NZ LYS C 210 1565 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 55 -60.20 -91.97 REMARK 500 GLU A 59 -14.27 72.10 REMARK 500 MET A 60 128.31 -172.93 REMARK 500 TRP A 73 75.19 -158.11 REMARK 500 ARG A 120 1.47 -69.59 REMARK 500 MET F 60 146.08 -174.19 REMARK 500 TRP F 73 76.64 -159.51 REMARK 500 ASN F 141 113.82 -161.22 REMARK 500 GLU B 59 -11.20 74.05 REMARK 500 MET B 60 114.29 -162.38 REMARK 500 TRP B 73 76.80 -161.48 REMARK 500 ARG C 47 72.21 52.32 REMARK 500 GLU C 59 -13.43 72.49 REMARK 500 MET C 60 133.43 -174.74 REMARK 500 HIS C 146 31.87 -97.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 ASP A 54 OD2 102.7 REMARK 620 3 VAL A 56 O 111.0 104.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 9 OD1 REMARK 620 2 ASP F 54 OD2 121.5 REMARK 620 3 VAL F 56 O 119.7 103.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF F 302 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 54 OD1 REMARK 620 2 BEF F 302 F1 75.7 REMARK 620 3 BEF F 302 F2 107.1 111.7 REMARK 620 4 BEF F 302 F3 140.4 109.8 106.6 REMARK 620 5 ASP F 54 OD2 65.4 117.1 125.7 78.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD1 REMARK 620 2 ASP B 9 OD2 50.1 REMARK 620 3 ASP B 54 OD2 82.0 132.1 REMARK 620 4 VAL B 56 O 96.3 85.4 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF B 302 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 54 OD1 REMARK 620 2 BEF B 302 F1 123.8 REMARK 620 3 BEF B 302 F2 77.8 113.1 REMARK 620 4 BEF B 302 F3 119.6 109.9 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 8 OD1 REMARK 620 2 ASP C 9 OD1 68.6 REMARK 620 3 ASP C 54 OD2 60.9 124.7 REMARK 620 4 VAL C 56 O 147.2 107.4 103.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF F 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF C 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IF4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MAGNESIUM AND BERYLLOFLUORIDE-ACTIVATED REMARK 900 VRAR FROM STAPHYLOCOCCUS AUREUS DBREF 5HEV A 1 210 UNP S4FAU8 S4FAU8_ENTFC 1 210 DBREF 5HEV F 1 210 UNP S4FAU8 S4FAU8_ENTFC 1 210 DBREF 5HEV B 1 210 UNP S4FAU8 S4FAU8_ENTFC 1 210 DBREF 5HEV C 1 210 UNP S4FAU8 S4FAU8_ENTFC 1 210 SEQRES 1 A 210 MET ILE LYS VAL LEU LEU VAL ASP ASP HIS GLU MET VAL SEQRES 2 A 210 ARG LEU GLY VAL SER SER TYR LEU SER ILE GLN GLU ASP SEQRES 3 A 210 ILE GLU VAL ILE GLY GLU ALA GLU ASN GLY ARG GLN GLY SEQRES 4 A 210 TYR GLU LYS ALA MET ALA LEU ARG PRO ASP VAL ILE LEU SEQRES 5 A 210 MET ASP LEU VAL MET GLU GLU MET ASP GLY ILE GLU SER SEQRES 6 A 210 THR LYS ALA ILE LEU LYS ASP TRP PRO LYS ALA LYS ILE SEQRES 7 A 210 ILE ILE VAL THR SER PHE ILE ASP ASP GLU LYS VAL TYR SEQRES 8 A 210 PRO ALA ILE GLU ALA GLY ALA ALA GLY TYR LEU LEU LYS SEQRES 9 A 210 THR SER THR ALA HIS GLU ILE ALA ASP ALA ILE ARG ALA SEQRES 10 A 210 THR GLN ARG GLY GLU ARG VAL LEU GLU PRO GLU VAL THR SEQRES 11 A 210 THR LYS MET MET GLU LYS MET SER ARG ARG ASN ASP PRO SEQRES 12 A 210 VAL LEU HIS GLU GLU LEU THR ASN ARG GLU ASN GLU ILE SEQRES 13 A 210 LEU MET LEU ILE SER GLU GLY LYS SER ASN GLN GLU ILE SEQRES 14 A 210 ALA ASP GLU LEU PHE ILE THR LEU LYS THR VAL LYS THR SEQRES 15 A 210 HIS VAL SER ASN ILE LEU ALA LYS LEU GLU VAL GLU ASP SEQRES 16 A 210 ARG THR GLN ALA ALA ILE TYR ALA PHE LYS HIS GLY LEU SEQRES 17 A 210 VAL LYS SEQRES 1 F 210 MET ILE LYS VAL LEU LEU VAL ASP ASP HIS GLU MET VAL SEQRES 2 F 210 ARG LEU GLY VAL SER SER TYR LEU SER ILE GLN GLU ASP SEQRES 3 F 210 ILE GLU VAL ILE GLY GLU ALA GLU ASN GLY ARG GLN GLY SEQRES 4 F 210 TYR GLU LYS ALA MET ALA LEU ARG PRO ASP VAL ILE LEU SEQRES 5 F 210 MET ASP LEU VAL MET GLU GLU MET ASP GLY ILE GLU SER SEQRES 6 F 210 THR LYS ALA ILE LEU LYS ASP TRP PRO LYS ALA LYS ILE SEQRES 7 F 210 ILE ILE VAL THR SER PHE ILE ASP ASP GLU LYS VAL TYR SEQRES 8 F 210 PRO ALA ILE GLU ALA GLY ALA ALA GLY TYR LEU LEU LYS SEQRES 9 F 210 THR SER THR ALA HIS GLU ILE ALA ASP ALA ILE ARG ALA SEQRES 10 F 210 THR GLN ARG GLY GLU ARG VAL LEU GLU PRO GLU VAL THR SEQRES 11 F 210 THR LYS MET MET GLU LYS MET SER ARG ARG ASN ASP PRO SEQRES 12 F 210 VAL LEU HIS GLU GLU LEU THR ASN ARG GLU ASN GLU ILE SEQRES 13 F 210 LEU MET LEU ILE SER GLU GLY LYS SER ASN GLN GLU ILE SEQRES 14 F 210 ALA ASP GLU LEU PHE ILE THR LEU LYS THR VAL LYS THR SEQRES 15 F 210 HIS VAL SER ASN ILE LEU ALA LYS LEU GLU VAL GLU ASP SEQRES 16 F 210 ARG THR GLN ALA ALA ILE TYR ALA PHE LYS HIS GLY LEU SEQRES 17 F 210 VAL LYS SEQRES 1 B 210 MET ILE LYS VAL LEU LEU VAL ASP ASP HIS GLU MET VAL SEQRES 2 B 210 ARG LEU GLY VAL SER SER TYR LEU SER ILE GLN GLU ASP SEQRES 3 B 210 ILE GLU VAL ILE GLY GLU ALA GLU ASN GLY ARG GLN GLY SEQRES 4 B 210 TYR GLU LYS ALA MET ALA LEU ARG PRO ASP VAL ILE LEU SEQRES 5 B 210 MET ASP LEU VAL MET GLU GLU MET ASP GLY ILE GLU SER SEQRES 6 B 210 THR LYS ALA ILE LEU LYS ASP TRP PRO LYS ALA LYS ILE SEQRES 7 B 210 ILE ILE VAL THR SER PHE ILE ASP ASP GLU LYS VAL TYR SEQRES 8 B 210 PRO ALA ILE GLU ALA GLY ALA ALA GLY TYR LEU LEU LYS SEQRES 9 B 210 THR SER THR ALA HIS GLU ILE ALA ASP ALA ILE ARG ALA SEQRES 10 B 210 THR GLN ARG GLY GLU ARG VAL LEU GLU PRO GLU VAL THR SEQRES 11 B 210 THR LYS MET MET GLU LYS MET SER ARG ARG ASN ASP PRO SEQRES 12 B 210 VAL LEU HIS GLU GLU LEU THR ASN ARG GLU ASN GLU ILE SEQRES 13 B 210 LEU MET LEU ILE SER GLU GLY LYS SER ASN GLN GLU ILE SEQRES 14 B 210 ALA ASP GLU LEU PHE ILE THR LEU LYS THR VAL LYS THR SEQRES 15 B 210 HIS VAL SER ASN ILE LEU ALA LYS LEU GLU VAL GLU ASP SEQRES 16 B 210 ARG THR GLN ALA ALA ILE TYR ALA PHE LYS HIS GLY LEU SEQRES 17 B 210 VAL LYS SEQRES 1 C 210 MET ILE LYS VAL LEU LEU VAL ASP ASP HIS GLU MET VAL SEQRES 2 C 210 ARG LEU GLY VAL SER SER TYR LEU SER ILE GLN GLU ASP SEQRES 3 C 210 ILE GLU VAL ILE GLY GLU ALA GLU ASN GLY ARG GLN GLY SEQRES 4 C 210 TYR GLU LYS ALA MET ALA LEU ARG PRO ASP VAL ILE LEU SEQRES 5 C 210 MET ASP LEU VAL MET GLU GLU MET ASP GLY ILE GLU SER SEQRES 6 C 210 THR LYS ALA ILE LEU LYS ASP TRP PRO LYS ALA LYS ILE SEQRES 7 C 210 ILE ILE VAL THR SER PHE ILE ASP ASP GLU LYS VAL TYR SEQRES 8 C 210 PRO ALA ILE GLU ALA GLY ALA ALA GLY TYR LEU LEU LYS SEQRES 9 C 210 THR SER THR ALA HIS GLU ILE ALA ASP ALA ILE ARG ALA SEQRES 10 C 210 THR GLN ARG GLY GLU ARG VAL LEU GLU PRO GLU VAL THR SEQRES 11 C 210 THR LYS MET MET GLU LYS MET SER ARG ARG ASN ASP PRO SEQRES 12 C 210 VAL LEU HIS GLU GLU LEU THR ASN ARG GLU ASN GLU ILE SEQRES 13 C 210 LEU MET LEU ILE SER GLU GLY LYS SER ASN GLN GLU ILE SEQRES 14 C 210 ALA ASP GLU LEU PHE ILE THR LEU LYS THR VAL LYS THR SEQRES 15 C 210 HIS VAL SER ASN ILE LEU ALA LYS LEU GLU VAL GLU ASP SEQRES 16 C 210 ARG THR GLN ALA ALA ILE TYR ALA PHE LYS HIS GLY LEU SEQRES 17 C 210 VAL LYS HET MG A 301 1 HET BEF A 302 4 HET MG F 301 1 HET BEF F 302 4 HET MG B 301 1 HET BEF B 302 4 HET MG C 301 1 HET BEF C 302 4 HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION FORMUL 5 MG 4(MG 2+) FORMUL 6 BEF 4(BE F3 1-) HELIX 1 AA1 HIS A 10 SER A 22 1 13 HELIX 2 AA2 ASN A 35 ARG A 47 1 13 HELIX 3 AA3 ASP A 61 TRP A 73 1 13 HELIX 4 AA4 ASP A 86 ALA A 96 1 11 HELIX 5 AA5 THR A 107 ARG A 120 1 14 HELIX 6 AA6 GLU A 126 ARG A 139 1 14 HELIX 7 AA7 ARG A 152 SER A 161 1 10 HELIX 8 AA8 SER A 165 LEU A 173 1 9 HELIX 9 AA9 THR A 176 LEU A 191 1 16 HELIX 10 AB1 ARG A 196 HIS A 206 1 11 HELIX 11 AB2 HIS F 10 LEU F 21 1 12 HELIX 12 AB3 ASN F 35 ARG F 47 1 13 HELIX 13 AB4 ASP F 61 TRP F 73 1 13 HELIX 14 AB5 ASP F 86 ALA F 96 1 11 HELIX 15 AB6 THR F 107 GLN F 119 1 13 HELIX 16 AB7 GLU F 126 SER F 138 1 13 HELIX 17 AB8 VAL F 144 LEU F 149 5 6 HELIX 18 AB9 THR F 150 SER F 161 1 12 HELIX 19 AC1 SER F 165 PHE F 174 1 10 HELIX 20 AC2 THR F 176 LEU F 191 1 16 HELIX 21 AC3 ASP F 195 HIS F 206 1 12 HELIX 22 AC4 HIS B 10 ILE B 23 1 14 HELIX 23 AC5 ASN B 35 ARG B 47 1 13 HELIX 24 AC6 ASP B 61 TRP B 73 1 13 HELIX 25 AC7 ASP B 86 ALA B 96 1 11 HELIX 26 AC8 THR B 107 ARG B 120 1 14 HELIX 27 AC9 GLU B 126 ARG B 139 1 14 HELIX 28 AD1 THR B 150 GLU B 162 1 13 HELIX 29 AD2 SER B 165 PHE B 174 1 10 HELIX 30 AD3 THR B 176 LEU B 191 1 16 HELIX 31 AD4 ASP B 195 HIS B 206 1 12 HELIX 32 AD5 HIS C 10 LEU C 21 1 12 HELIX 33 AD6 ASN C 35 ARG C 47 1 13 HELIX 34 AD7 ASP C 61 LYS C 71 1 11 HELIX 35 AD8 ASP C 86 ALA C 96 1 11 HELIX 36 AD9 ALA C 108 ARG C 120 1 13 HELIX 37 AE1 GLU C 126 SER C 138 1 13 HELIX 38 AE2 THR C 150 SER C 161 1 12 HELIX 39 AE3 SER C 165 PHE C 174 1 10 HELIX 40 AE4 THR C 176 LEU C 191 1 16 HELIX 41 AE5 ASP C 195 HIS C 206 1 12 SHEET 1 AA1 5 ILE A 27 ALA A 33 0 SHEET 2 AA1 5 ILE A 2 VAL A 7 1 N ILE A 2 O GLU A 28 SHEET 3 AA1 5 VAL A 50 MET A 53 1 O LEU A 52 N LEU A 5 SHEET 4 AA1 5 LYS A 77 THR A 82 1 O ILE A 79 N ILE A 51 SHEET 5 AA1 5 GLY A 100 LEU A 103 1 O LEU A 102 N ILE A 80 SHEET 1 AA2 6 ILE F 27 GLY F 31 0 SHEET 2 AA2 6 ILE F 2 VAL F 7 1 N VAL F 4 O ILE F 30 SHEET 3 AA2 6 VAL F 50 MET F 53 1 O LEU F 52 N LEU F 5 SHEET 4 AA2 6 LYS F 77 THR F 82 1 O ILE F 79 N ILE F 51 SHEET 5 AA2 6 GLY F 100 LEU F 103 1 O LEU F 102 N ILE F 80 SHEET 6 AA2 6 VAL F 124 LEU F 125 1 O VAL F 124 N TYR F 101 SHEET 1 AA3 6 ILE B 27 ALA B 33 0 SHEET 2 AA3 6 ILE B 2 VAL B 7 1 N ILE B 2 O GLU B 28 SHEET 3 AA3 6 VAL B 50 MET B 53 1 O LEU B 52 N LEU B 5 SHEET 4 AA3 6 ILE B 78 THR B 82 1 O ILE B 79 N ILE B 51 SHEET 5 AA3 6 GLY B 100 LEU B 103 1 O LEU B 102 N ILE B 80 SHEET 6 AA3 6 VAL B 124 LEU B 125 1 O VAL B 124 N TYR B 101 SHEET 1 AA4 5 ILE C 27 ALA C 33 0 SHEET 2 AA4 5 ILE C 2 VAL C 7 1 N LEU C 6 O ALA C 33 SHEET 3 AA4 5 ILE C 51 MET C 53 1 O LEU C 52 N LEU C 5 SHEET 4 AA4 5 ILE C 78 THR C 82 1 O ILE C 79 N ILE C 51 SHEET 5 AA4 5 GLY C 100 LEU C 103 1 O LEU C 102 N ILE C 80 LINK OD1 ASP A 9 MG MG A 301 1555 1555 2.03 LINK OD2 ASP A 54 MG MG A 301 1555 1555 1.86 LINK O VAL A 56 MG MG A 301 1555 1555 2.02 LINK OD1 ASP F 9 MG MG F 301 1555 1555 1.90 LINK OD2 ASP F 54 MG MG F 301 1555 1555 1.75 LINK OD1 ASP F 54 BE BEF F 302 1555 1555 1.97 LINK OD2 ASP F 54 BE BEF F 302 1555 1555 2.08 LINK O VAL F 56 MG MG F 301 1555 1555 2.05 LINK OD1 ASP B 9 MG MG B 301 1555 1555 1.99 LINK OD2 ASP B 9 MG MG B 301 1555 1555 2.85 LINK OD2 ASP B 54 MG MG B 301 1555 1555 1.85 LINK OD1 ASP B 54 BE BEF B 302 1555 1555 1.75 LINK O VAL B 56 MG MG B 301 1555 1555 2.04 LINK OD1 ASP C 8 MG MG C 301 1555 1555 2.92 LINK OD1 ASP C 9 MG MG C 301 1555 1555 1.84 LINK OD2 ASP C 54 MG MG C 301 1555 1555 1.75 LINK O VAL C 56 MG MG C 301 1555 1555 2.07 CISPEP 1 LYS A 136 MET A 137 0 18.30 CISPEP 2 ASP F 142 PRO F 143 0 -5.34 CISPEP 3 ASP C 142 PRO C 143 0 -6.38 SITE 1 AC1 6 ASP A 8 ASP A 9 ASP A 54 VAL A 56 SITE 2 AC1 6 MET A 57 BEF A 302 SITE 1 AC2 8 ASP A 54 LEU A 55 VAL A 56 THR A 82 SITE 2 AC2 8 SER A 83 PHE A 84 LYS A 104 MG A 301 SITE 1 AC3 6 ASP F 8 ASP F 9 ASP F 54 VAL F 56 SITE 2 AC3 6 MET F 57 BEF F 302 SITE 1 AC4 9 ASP F 9 ASP F 54 LEU F 55 VAL F 56 SITE 2 AC4 9 THR F 82 SER F 83 PHE F 84 LYS F 104 SITE 3 AC4 9 MG F 301 SITE 1 AC5 4 ASP B 9 ASP B 54 VAL B 56 BEF B 302 SITE 1 AC6 8 ASP B 9 ASP B 54 LEU B 55 VAL B 56 SITE 2 AC6 8 THR B 82 SER B 83 LYS B 104 MG B 301 SITE 1 AC7 5 ASP C 8 ASP C 9 ASP C 54 VAL C 56 SITE 2 AC7 5 BEF C 302 SITE 1 AC8 8 ASP C 9 ASP C 54 VAL C 56 THR C 82 SITE 2 AC8 8 SER C 83 PHE C 84 LYS C 104 MG C 301 CRYST1 68.032 68.032 276.949 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014699 0.008486 0.000000 0.00000 SCALE2 0.000000 0.016973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003611 0.00000