HEADER PEPTIDE BINDING PROTEIN 06-JAN-16 5HFD TITLE THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 (G330T, H372A TITLE 2 DOUBLE MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ-3 DOMAIN (UNP RESIDUES 302-402); COMPND 5 SYNONYM: POSTSYNAPTIC DENSITY PROTEIN 95,PSD-95,SYNAPSE-ASSOCIATED COMPND 6 PROTEIN 90,SAP90; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DLG4, DLGH4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS PDZ, GLGF, DHR, ADHESION, SYNAPSE, SYNAPTIC DENSITY, PEPTIDE-BINDING KEYWDS 2 DOMAIN, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.I.WHITE,A.S.RAMAN,R.RANGANATHAN REVDAT 2 27-SEP-23 5HFD 1 REMARK REVDAT 1 11-JAN-17 5HFD 0 JRNL AUTH K.I.WHITE,A.S.RAMAN,R.RANGANATHAN JRNL TITL THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 JRNL TITL 2 (G330T, H372A DOUBLE MUTANT) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10PRE_2104 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2375 - 3.6605 0.99 1382 152 0.1628 0.1590 REMARK 3 2 3.6605 - 2.9064 1.00 1278 144 0.1632 0.1777 REMARK 3 3 2.9064 - 2.5393 1.00 1263 140 0.1825 0.2001 REMARK 3 4 2.5393 - 2.3072 1.00 1255 139 0.1792 0.1897 REMARK 3 5 2.3072 - 2.1419 1.00 1232 136 0.1693 0.2001 REMARK 3 6 2.1419 - 2.0157 1.00 1232 138 0.1792 0.1882 REMARK 3 7 2.0157 - 1.9147 1.00 1235 137 0.1879 0.2124 REMARK 3 8 1.9147 - 1.8314 1.00 1214 135 0.1995 0.2501 REMARK 3 9 1.8314 - 1.7609 1.00 1225 135 0.2137 0.2330 REMARK 3 10 1.7609 - 1.7002 1.00 1228 138 0.2305 0.2489 REMARK 3 11 1.7002 - 1.6470 1.00 1205 134 0.2228 0.2693 REMARK 3 12 1.6470 - 1.5999 0.99 1207 134 0.2462 0.2659 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1106 REMARK 3 ANGLE : 1.257 1524 REMARK 3 CHIRALITY : 0.076 165 REMARK 3 PLANARITY : 0.011 220 REMARK 3 DIHEDRAL : 18.622 427 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.4521 66.9920 47.7965 REMARK 3 T TENSOR REMARK 3 T11: 0.3887 T22: 0.5708 REMARK 3 T33: 0.5413 T12: -0.0023 REMARK 3 T13: -0.0618 T23: 0.1143 REMARK 3 L TENSOR REMARK 3 L11: 5.9671 L22: 6.3063 REMARK 3 L33: 3.3908 L12: 6.1073 REMARK 3 L13: 4.2037 L23: 4.4248 REMARK 3 S TENSOR REMARK 3 S11: 1.0897 S12: -1.9276 S13: -1.1444 REMARK 3 S21: 0.8829 S22: -0.6885 S23: -0.7448 REMARK 3 S31: 0.4937 S32: 0.1650 S33: -0.3633 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2710 64.9922 40.8775 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.1053 REMARK 3 T33: 0.1010 T12: -0.0344 REMARK 3 T13: -0.0148 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 3.8235 L22: 4.0915 REMARK 3 L33: 3.3740 L12: -0.5078 REMARK 3 L13: -0.6015 L23: -0.8824 REMARK 3 S TENSOR REMARK 3 S11: -0.1428 S12: -0.4246 S13: 0.2134 REMARK 3 S21: 0.3935 S22: 0.1026 S23: -0.0874 REMARK 3 S31: -0.3633 S32: 0.1353 S33: 0.0409 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3382 65.3257 22.5442 REMARK 3 T TENSOR REMARK 3 T11: 0.1734 T22: 0.1711 REMARK 3 T33: 0.1298 T12: -0.0406 REMARK 3 T13: -0.0652 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.5355 L22: 5.1844 REMARK 3 L33: 1.2614 L12: -1.0263 REMARK 3 L13: 0.2188 L23: -1.1934 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: 0.4037 S13: 0.0856 REMARK 3 S21: -0.6533 S22: 0.0496 S23: 0.2514 REMARK 3 S31: -0.0863 S32: 0.0600 S33: -0.0507 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6817 51.0922 29.8033 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.0485 REMARK 3 T33: 0.3603 T12: -0.0955 REMARK 3 T13: -0.0649 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 3.0089 L22: 3.0309 REMARK 3 L33: 3.5136 L12: 1.3088 REMARK 3 L13: -0.5507 L23: -0.1330 REMARK 3 S TENSOR REMARK 3 S11: 0.1444 S12: 0.4290 S13: -0.8193 REMARK 3 S21: -0.0863 S22: 0.0165 S23: 0.4553 REMARK 3 S31: 0.8521 S32: -0.2174 S33: 0.2395 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9412 66.8123 31.6941 REMARK 3 T TENSOR REMARK 3 T11: 0.0860 T22: 0.0846 REMARK 3 T33: 0.0976 T12: -0.0365 REMARK 3 T13: -0.0159 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.9391 L22: 6.9465 REMARK 3 L33: 5.4695 L12: 1.7444 REMARK 3 L13: -1.1877 L23: -1.3336 REMARK 3 S TENSOR REMARK 3 S11: 0.1505 S12: -0.0389 S13: 0.1576 REMARK 3 S21: 0.3004 S22: -0.2762 S23: 0.0822 REMARK 3 S31: -0.5523 S32: 0.1490 S33: 0.1366 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 357 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6701 57.9935 33.4400 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.1480 REMARK 3 T33: 0.1848 T12: -0.0570 REMARK 3 T13: -0.0047 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 2.4392 L22: 1.5708 REMARK 3 L33: 2.5524 L12: -0.2161 REMARK 3 L13: -0.1614 L23: 0.9461 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.1801 S13: 0.1467 REMARK 3 S21: 0.0859 S22: -0.0694 S23: 0.4750 REMARK 3 S31: 0.1918 S32: -0.4190 S33: 0.0626 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7535 58.6780 22.8601 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.2647 REMARK 3 T33: 0.1499 T12: -0.0530 REMARK 3 T13: -0.0781 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 5.2095 L22: 3.2828 REMARK 3 L33: 3.4839 L12: -2.4042 REMARK 3 L13: 0.7983 L23: 0.4088 REMARK 3 S TENSOR REMARK 3 S11: -0.1863 S12: 0.1960 S13: -0.0171 REMARK 3 S21: -0.4471 S22: 0.2346 S23: 0.4476 REMARK 3 S31: -0.2131 S32: -0.2212 S33: 0.0964 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 381 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4772 66.3485 31.5113 REMARK 3 T TENSOR REMARK 3 T11: 0.1192 T22: 0.1095 REMARK 3 T33: 0.1586 T12: -0.0178 REMARK 3 T13: -0.0473 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.3047 L22: 2.1881 REMARK 3 L33: 2.6304 L12: -1.1819 REMARK 3 L13: 0.8980 L23: -0.4053 REMARK 3 S TENSOR REMARK 3 S11: -0.1777 S12: 0.1130 S13: 0.1575 REMARK 3 S21: -0.0408 S22: 0.1248 S23: 0.2456 REMARK 3 S31: -0.3078 S32: -0.2747 S33: 0.0161 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 393 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4497 50.2619 37.7524 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.1256 REMARK 3 T33: 0.1445 T12: 0.0119 REMARK 3 T13: 0.0340 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 2.0645 L22: 2.7063 REMARK 3 L33: 2.2018 L12: -2.2909 REMARK 3 L13: -2.1199 L23: 2.3663 REMARK 3 S TENSOR REMARK 3 S11: -0.5119 S12: -0.2650 S13: -0.2587 REMARK 3 S21: 0.6425 S22: 0.2568 S23: 0.1036 REMARK 3 S31: 0.9774 S32: 0.0215 S33: 0.1989 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 415 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0859 51.4896 37.6464 REMARK 3 T TENSOR REMARK 3 T11: 0.1759 T22: 0.2208 REMARK 3 T33: 0.1864 T12: 0.0880 REMARK 3 T13: -0.0669 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 3.2101 L22: 3.7413 REMARK 3 L33: 5.5110 L12: 1.1533 REMARK 3 L13: 1.2051 L23: 0.8189 REMARK 3 S TENSOR REMARK 3 S11: -0.3101 S12: -0.2150 S13: 0.3043 REMARK 3 S21: 0.5455 S22: 0.3265 S23: -0.3582 REMARK 3 S31: 0.2266 S32: 0.4297 S33: 0.1342 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793144 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16618 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.233 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 63.1920 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 15.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.111 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1BFE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR SOLUTION CONTAINED 1 M REMARK 280 SODIUM CITRATE, PH 7.0. EQUAL AMOUNTS (1.5 MICROLITERS) OF REMARK 280 PROTEIN (13 MG/ML) AND RESERVOIR SOLUTION WERE MIXED AND REMARK 280 EQUILLIBRATED AGAINST 500 MICROLITERS OF CRYSTALLIZATION BUFFER., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.64050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.64050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.64050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.64050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.64050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.64050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 44.64050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 44.64050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 44.64050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 44.64050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 44.64050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 44.64050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 44.64050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 44.64050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 44.64050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 44.64050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 44.64050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 44.64050 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 66.96075 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 22.32025 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 22.32025 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 66.96075 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 66.96075 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.96075 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 22.32025 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 22.32025 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 66.96075 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 22.32025 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 66.96075 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 22.32025 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 66.96075 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 22.32025 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 22.32025 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 22.32025 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 66.96075 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 22.32025 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 66.96075 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 66.96075 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 66.96075 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 22.32025 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 22.32025 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 66.96075 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 66.96075 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 22.32025 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 22.32025 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 22.32025 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 22.32025 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 66.96075 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 22.32025 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 66.96075 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 22.32025 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 66.96075 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 66.96075 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 66.96075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 592 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 304 O HOH A 501 1.98 REMARK 500 O HOH A 527 O HOH A 590 2.12 REMARK 500 OE2 GLU A 352 O HOH A 502 2.18 REMARK 500 O HOH A 567 O HOH A 622 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLY A 297 OE2 GLU A 352 20564 1.88 REMARK 500 O HOH A 585 O HOH A 597 10655 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 321 -51.41 -127.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 322 12.98 REMARK 500 GLU A 334 11.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BFE RELATED DB: PDB REMARK 900 RELATED ID: 5HDY RELATED DB: PDB REMARK 900 RELATED ID: 5HEB RELATED DB: PDB REMARK 900 RELATED ID: 5HED RELATED DB: PDB REMARK 900 RELATED ID: 5HET RELATED DB: PDB REMARK 900 RELATED ID: 5HEY RELATED DB: PDB REMARK 900 RELATED ID: 5HF1 RELATED DB: PDB REMARK 900 RELATED ID: 5HF4 RELATED DB: PDB REMARK 900 RELATED ID: 5HFB RELATED DB: PDB REMARK 900 RELATED ID: 5HFC RELATED DB: PDB REMARK 900 RELATED ID: 5HFE RELATED DB: PDB REMARK 900 RELATED ID: 5HFF RELATED DB: PDB DBREF 5HFD A 302 402 UNP P31016 DLG4_RAT 302 402 SEQADV 5HFD GLY A 297 UNP P31016 EXPRESSION TAG SEQADV 5HFD SER A 298 UNP P31016 EXPRESSION TAG SEQADV 5HFD PRO A 299 UNP P31016 EXPRESSION TAG SEQADV 5HFD GLU A 300 UNP P31016 EXPRESSION TAG SEQADV 5HFD PHE A 301 UNP P31016 EXPRESSION TAG SEQADV 5HFD THR A 330 UNP P31016 GLY 330 ENGINEERED MUTATION SEQADV 5HFD ALA A 372 UNP P31016 HIS 372 ENGINEERED MUTATION SEQADV 5HFD ASN A 403 UNP P31016 EXPRESSION TAG SEQADV 5HFD SER A 404 UNP P31016 EXPRESSION TAG SEQADV 5HFD ARG A 405 UNP P31016 EXPRESSION TAG SEQADV 5HFD VAL A 406 UNP P31016 EXPRESSION TAG SEQADV 5HFD ASP A 407 UNP P31016 EXPRESSION TAG SEQADV 5HFD SER A 408 UNP P31016 EXPRESSION TAG SEQADV 5HFD SER A 409 UNP P31016 EXPRESSION TAG SEQADV 5HFD GLY A 410 UNP P31016 EXPRESSION TAG SEQADV 5HFD ARG A 411 UNP P31016 EXPRESSION TAG SEQADV 5HFD ILE A 412 UNP P31016 EXPRESSION TAG SEQADV 5HFD VAL A 413 UNP P31016 EXPRESSION TAG SEQADV 5HFD THR A 414 UNP P31016 EXPRESSION TAG SEQADV 5HFD ASP A 415 UNP P31016 EXPRESSION TAG SEQRES 1 A 119 GLY SER PRO GLU PHE LEU GLY GLU GLU ASP ILE PRO ARG SEQRES 2 A 119 GLU PRO ARG ARG ILE VAL ILE HIS ARG GLY SER THR GLY SEQRES 3 A 119 LEU GLY PHE ASN ILE VAL GLY THR GLU ASP GLY GLU GLY SEQRES 4 A 119 ILE PHE ILE SER PHE ILE LEU ALA GLY GLY PRO ALA ASP SEQRES 5 A 119 LEU SER GLY GLU LEU ARG LYS GLY ASP GLN ILE LEU SER SEQRES 6 A 119 VAL ASN GLY VAL ASP LEU ARG ASN ALA SER ALA GLU GLN SEQRES 7 A 119 ALA ALA ILE ALA LEU LYS ASN ALA GLY GLN THR VAL THR SEQRES 8 A 119 ILE ILE ALA GLN TYR LYS PRO GLU GLU TYR SER ARG PHE SEQRES 9 A 119 GLU ALA ASN SER ARG VAL ASP SER SER GLY ARG ILE VAL SEQRES 10 A 119 THR ASP FORMUL 2 HOH *127(H2 O) HELIX 1 AA1 PHE A 301 GLU A 305 5 5 HELIX 2 AA2 GLY A 345 GLY A 351 1 7 HELIX 3 AA3 SER A 371 ASN A 381 1 11 HELIX 4 AA4 LYS A 393 ARG A 399 1 7 SHEET 1 AA1 4 ARG A 312 HIS A 317 0 SHEET 2 AA1 4 THR A 385 TYR A 392 -1 O ILE A 388 N ILE A 314 SHEET 3 AA1 4 ASP A 357 VAL A 362 -1 N GLN A 358 O GLN A 391 SHEET 4 AA1 4 VAL A 365 ASP A 366 -1 O VAL A 365 N VAL A 362 SHEET 1 AA2 2 PHE A 325 VAL A 328 0 SHEET 2 AA2 2 PHE A 337 ILE A 341 -1 O PHE A 337 N VAL A 328 SHEET 1 AA3 2 SER A 404 VAL A 406 0 SHEET 2 AA3 2 ILE A 412 THR A 414 -1 O VAL A 413 N ARG A 405 CRYST1 89.281 89.281 89.281 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011201 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011201 0.00000