HEADER TRANSCRIPTION 07-JAN-16 5HFR TITLE CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN H395R MUTANT OF HUMAN BRD3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 306-416; COMPND 5 SYNONYM: RING3-LIKE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD3, KIAA0043, RING3L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSCRIPTION REGULATION, POST TRANSLATIONAL MODIFICATIONS KEYWDS 2 RECOGNITION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,C.LORI,A.PASQUO,R.CHIARALUCE,V.CONSALVI,M.FONSECA,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP REVDAT 2 10-JAN-24 5HFR 1 REMARK REVDAT 1 20-JAN-16 5HFR 0 JRNL AUTH C.TALLANT,C.LORI,A.PASQUO,R.CHIARALUCE,V.CONSALVI,M.FONSECA, JRNL AUTH 2 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN H395R MUTANT OF JRNL TITL 2 HUMAN BRD3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 65516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3348 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4395 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 220 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.889 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3751 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3544 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5045 ; 1.486 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8180 ; 0.860 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 5.082 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;32.808 ;22.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;11.724 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.980 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4136 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 884 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1752 ; 1.111 ; 1.406 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1751 ; 1.108 ; 1.405 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2184 ; 1.735 ; 2.099 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2185 ; 1.736 ; 2.099 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1999 ; 1.987 ; 1.708 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1996 ; 1.984 ; 1.704 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2857 ; 3.149 ; 2.438 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4725 ; 5.109 ;12.485 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4726 ; 5.109 ;12.489 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 307 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): -50.0029 -48.5752 17.4614 REMARK 3 T TENSOR REMARK 3 T11: 0.0188 T22: 0.0115 REMARK 3 T33: 0.0378 T12: -0.0101 REMARK 3 T13: -0.0069 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.5630 L22: 0.7634 REMARK 3 L33: 0.3837 L12: 0.4291 REMARK 3 L13: 0.1935 L23: 0.5149 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.0155 S13: 0.0630 REMARK 3 S21: -0.0756 S22: 0.0313 S23: 0.0233 REMARK 3 S31: -0.0465 S32: 0.0258 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 307 B 416 REMARK 3 ORIGIN FOR THE GROUP (A): -55.2098 -90.3788 17.4609 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.0176 REMARK 3 T33: 0.0352 T12: -0.0073 REMARK 3 T13: -0.0038 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.3566 L22: 0.8990 REMARK 3 L33: 0.6046 L12: 0.3200 REMARK 3 L13: -0.0501 L23: -0.5945 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: -0.0106 S13: -0.0783 REMARK 3 S21: -0.0670 S22: 0.0012 S23: -0.0305 REMARK 3 S31: 0.0319 S32: 0.0263 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 308 C 416 REMARK 3 ORIGIN FOR THE GROUP (A): -33.2968 -62.4801 15.4745 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: 0.0184 REMARK 3 T33: 0.0414 T12: -0.0115 REMARK 3 T13: 0.0068 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.2688 L22: 1.0487 REMARK 3 L33: 0.2851 L12: 0.7023 REMARK 3 L13: 0.5852 L23: 0.3731 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: 0.0213 S13: -0.0773 REMARK 3 S21: -0.0451 S22: 0.0627 S23: -0.1479 REMARK 3 S31: -0.0009 S32: 0.0019 S33: -0.0542 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 308 D 416 REMARK 3 ORIGIN FOR THE GROUP (A): -72.2056 -76.3385 15.7083 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: 0.0162 REMARK 3 T33: 0.0183 T12: -0.0065 REMARK 3 T13: 0.0028 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.9336 L22: 0.6652 REMARK 3 L33: 0.2527 L12: 0.6649 REMARK 3 L13: -0.3537 L23: -0.3601 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.0042 S13: 0.0502 REMARK 3 S21: -0.0097 S22: 0.0373 S23: 0.0626 REMARK 3 S31: -0.0072 S32: -0.0140 S33: -0.0444 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.23400 REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 2.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OO1 REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM NITRATE, 10 % PEG 3350, 5 REMARK 280 % EDO, 0.1 M BIS TRIS PROP. PH 6.5, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.41400 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.47700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.41400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.47700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 683 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 304 REMARK 465 MET A 305 REMARK 465 GLY A 306 REMARK 465 SER B 304 REMARK 465 MET B 305 REMARK 465 GLY B 306 REMARK 465 SER C 304 REMARK 465 MET C 305 REMARK 465 GLY C 306 REMARK 465 LYS C 307 REMARK 465 SER D 304 REMARK 465 MET D 305 REMARK 465 GLY D 306 REMARK 465 LYS D 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 336 CD CE NZ REMARK 470 LYS B 336 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU C 345 O HOH C 601 1.76 REMARK 500 O HOH D 640 O HOH D 647 1.79 REMARK 500 O HOH C 601 O HOH C 664 1.91 REMARK 500 O HOH B 652 O HOH D 601 1.93 REMARK 500 NH2 ARG B 402 O HOH B 601 2.10 REMARK 500 NZ LYS D 389 O HOH D 601 2.11 REMARK 500 O HOH B 684 O HOH C 630 2.15 REMARK 500 OE1 GLU D 369 O HOH D 602 2.15 REMARK 500 O HOH C 602 O HOH C 610 2.16 REMARK 500 O HOH A 658 O HOH A 676 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 345 69.76 -114.16 REMARK 500 LEU B 345 68.18 -110.00 REMARK 500 ARG C 368 54.08 39.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 702 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH C 700 DISTANCE = 6.80 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 501 DBREF 5HFR A 306 416 UNP Q15059 BRD3_HUMAN 306 416 DBREF 5HFR B 306 416 UNP Q15059 BRD3_HUMAN 306 416 DBREF 5HFR C 306 416 UNP Q15059 BRD3_HUMAN 306 416 DBREF 5HFR D 306 416 UNP Q15059 BRD3_HUMAN 306 416 SEQADV 5HFR SER A 304 UNP Q15059 EXPRESSION TAG SEQADV 5HFR MET A 305 UNP Q15059 EXPRESSION TAG SEQADV 5HFR ARG A 395 UNP Q15059 HIS 395 ENGINEERED MUTATION SEQADV 5HFR SER B 304 UNP Q15059 EXPRESSION TAG SEQADV 5HFR MET B 305 UNP Q15059 EXPRESSION TAG SEQADV 5HFR ARG B 395 UNP Q15059 HIS 395 ENGINEERED MUTATION SEQADV 5HFR SER C 304 UNP Q15059 EXPRESSION TAG SEQADV 5HFR MET C 305 UNP Q15059 EXPRESSION TAG SEQADV 5HFR ARG C 395 UNP Q15059 HIS 395 ENGINEERED MUTATION SEQADV 5HFR SER D 304 UNP Q15059 EXPRESSION TAG SEQADV 5HFR MET D 305 UNP Q15059 EXPRESSION TAG SEQADV 5HFR ARG D 395 UNP Q15059 HIS 395 ENGINEERED MUTATION SEQRES 1 A 113 SER MET GLY LYS LEU SER GLU HIS LEU ARG TYR CYS ASP SEQRES 2 A 113 SER ILE LEU ARG GLU MET LEU SER LYS LYS HIS ALA ALA SEQRES 3 A 113 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA GLU ALA SEQRES 4 A 113 LEU GLU LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO SEQRES 5 A 113 MET ASP LEU SER THR VAL LYS ARG LYS MET ASP GLY ARG SEQRES 6 A 113 GLU TYR PRO ASP ALA GLN GLY PHE ALA ALA ASP VAL ARG SEQRES 7 A 113 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP SEQRES 8 A 113 ARG GLU VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL SEQRES 9 A 113 PHE GLU MET ARG PHE ALA LYS MET PRO SEQRES 1 B 113 SER MET GLY LYS LEU SER GLU HIS LEU ARG TYR CYS ASP SEQRES 2 B 113 SER ILE LEU ARG GLU MET LEU SER LYS LYS HIS ALA ALA SEQRES 3 B 113 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA GLU ALA SEQRES 4 B 113 LEU GLU LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO SEQRES 5 B 113 MET ASP LEU SER THR VAL LYS ARG LYS MET ASP GLY ARG SEQRES 6 B 113 GLU TYR PRO ASP ALA GLN GLY PHE ALA ALA ASP VAL ARG SEQRES 7 B 113 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP SEQRES 8 B 113 ARG GLU VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL SEQRES 9 B 113 PHE GLU MET ARG PHE ALA LYS MET PRO SEQRES 1 C 113 SER MET GLY LYS LEU SER GLU HIS LEU ARG TYR CYS ASP SEQRES 2 C 113 SER ILE LEU ARG GLU MET LEU SER LYS LYS HIS ALA ALA SEQRES 3 C 113 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA GLU ALA SEQRES 4 C 113 LEU GLU LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO SEQRES 5 C 113 MET ASP LEU SER THR VAL LYS ARG LYS MET ASP GLY ARG SEQRES 6 C 113 GLU TYR PRO ASP ALA GLN GLY PHE ALA ALA ASP VAL ARG SEQRES 7 C 113 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP SEQRES 8 C 113 ARG GLU VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL SEQRES 9 C 113 PHE GLU MET ARG PHE ALA LYS MET PRO SEQRES 1 D 113 SER MET GLY LYS LEU SER GLU HIS LEU ARG TYR CYS ASP SEQRES 2 D 113 SER ILE LEU ARG GLU MET LEU SER LYS LYS HIS ALA ALA SEQRES 3 D 113 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA GLU ALA SEQRES 4 D 113 LEU GLU LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO SEQRES 5 D 113 MET ASP LEU SER THR VAL LYS ARG LYS MET ASP GLY ARG SEQRES 6 D 113 GLU TYR PRO ASP ALA GLN GLY PHE ALA ALA ASP VAL ARG SEQRES 7 D 113 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP SEQRES 8 D 113 ARG GLU VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL SEQRES 9 D 113 PHE GLU MET ARG PHE ALA LYS MET PRO HET NO3 A 501 4 HET EDO B 501 4 HET EDO C 501 4 HET EDO C 502 4 HET EDO D 501 4 HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 NO3 N O3 1- FORMUL 6 EDO 4(C2 H6 O2) FORMUL 10 HOH *402(H2 O) HELIX 1 AA1 LYS A 307 LEU A 323 1 17 HELIX 2 AA2 SER A 324 LYS A 326 5 3 HELIX 3 AA3 HIS A 327 TRP A 332 1 6 HELIX 4 AA4 PRO A 333 TYR A 335 5 3 HELIX 5 AA5 ASP A 339 GLU A 344 1 6 HELIX 6 AA6 ASP A 347 ILE A 352 1 6 HELIX 7 AA7 ASP A 357 GLY A 367 1 11 HELIX 8 AA8 ASP A 372 ASN A 391 1 20 HELIX 9 AA9 ARG A 395 LYS A 414 1 20 HELIX 10 AB1 SER B 309 LEU B 323 1 15 HELIX 11 AB2 SER B 324 LYS B 326 5 3 HELIX 12 AB3 HIS B 327 TRP B 332 1 6 HELIX 13 AB4 PRO B 333 TYR B 335 5 3 HELIX 14 AB5 ASP B 347 ILE B 352 1 6 HELIX 15 AB6 ASP B 357 GLY B 367 1 11 HELIX 16 AB7 ASP B 372 ASN B 391 1 20 HELIX 17 AB8 ARG B 395 LYS B 414 1 20 HELIX 18 AB9 SER C 309 LEU C 323 1 15 HELIX 19 AC1 SER C 324 LYS C 326 5 3 HELIX 20 AC2 HIS C 327 TRP C 332 1 6 HELIX 21 AC3 PRO C 333 TYR C 335 5 3 HELIX 22 AC4 ASP C 339 GLU C 344 1 6 HELIX 23 AC5 ASP C 347 ILE C 352 1 6 HELIX 24 AC6 ASP C 357 GLY C 367 1 11 HELIX 25 AC7 ASP C 372 ASN C 391 1 20 HELIX 26 AC8 ARG C 395 LYS C 414 1 20 HELIX 27 AC9 SER D 309 LEU D 323 1 15 HELIX 28 AD1 SER D 324 LYS D 326 5 3 HELIX 29 AD2 HIS D 327 TRP D 332 1 6 HELIX 30 AD3 PRO D 333 TYR D 335 5 3 HELIX 31 AD4 ASP D 347 ILE D 352 1 6 HELIX 32 AD5 ASP D 357 GLY D 367 1 11 HELIX 33 AD6 ASP D 372 ASN D 391 1 20 HELIX 34 AD7 ARG D 395 LYS D 414 1 20 SITE 1 AC1 2 LEU A 345 ASN A 391 SITE 1 AC2 4 GLU B 344 HIS B 346 ASP B 347 TRP C 332 SITE 1 AC3 7 TRP A 332 TYR C 314 SER C 317 ILE C 318 SITE 2 AC3 7 GLU C 321 ARG C 411 HOH C 608 SITE 1 AC4 6 GLN A 405 ASP A 406 GLN C 405 ASP C 406 SITE 2 AC4 6 HOH C 610 HOH C 611 SITE 1 AC5 7 TYR A 314 SER A 317 GLU A 321 HOH A 635 SITE 2 AC5 7 ASP D 347 TYR D 390 ARG D 395 CRYST1 64.828 92.546 102.954 90.00 90.00 90.00 P 21 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009713 0.00000