HEADER DE NOVO PROTEIN 07-JAN-16 5HG2 TITLE BACKBONE MODIFICATIONS IN THE PROTEIN GB1 HELIX: BETA-3-ALA24, BETA-3- TITLE 2 LYS28, BETA-3-LYS31, BETA-2-ASN35 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN G; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 302-357; COMPND 5 SYNONYM: IGG-BINDING PROTEIN G; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP. GROUP G; SOURCE 4 ORGANISM_TAXID: 1320 KEYWDS SYNTHETIC PROTEIN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.A.TAVENOR,Z.E.REINERT,G.A.LENGYEL,B.D.GRIFFITH,W.S.HORNE REVDAT 7 15-NOV-23 5HG2 1 LINK ATOM REVDAT 6 27-SEP-23 5HG2 1 LINK REVDAT 5 25-DEC-19 5HG2 1 REMARK REVDAT 4 13-SEP-17 5HG2 1 REMARK REVDAT 3 27-JUL-16 5HG2 1 REMARK REVDAT 2 09-MAR-16 5HG2 1 JRNL REVDAT 1 24-FEB-16 5HG2 0 JRNL AUTH N.A.TAVENOR,Z.E.REINERT,G.A.LENGYEL,B.D.GRIFFITH,W.S.HORNE JRNL TITL COMPARISON OF DESIGN STRATEGIES FOR ALPHA-HELIX BACKBONE JRNL TITL 2 MODIFICATION IN A PROTEIN TERTIARY FOLD. JRNL REF CHEM.COMMUN.(CAMB.) V. 52 3789 2016 JRNL REFN ESSN 1364-548X JRNL PMID 26853882 JRNL DOI 10.1039/C6CC00273K REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 22438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3408 - 4.3379 0.91 1550 151 0.1710 0.1835 REMARK 3 2 4.3379 - 3.4440 0.91 1552 151 0.1484 0.1536 REMARK 3 3 3.4440 - 3.0089 0.91 1556 154 0.1742 0.1863 REMARK 3 4 3.0089 - 2.7339 0.91 1515 148 0.1779 0.2035 REMARK 3 5 2.7339 - 2.5380 0.91 1562 147 0.1938 0.1977 REMARK 3 6 2.5380 - 2.3884 0.91 1530 146 0.1923 0.2331 REMARK 3 7 2.3884 - 2.2688 0.89 1495 141 0.2069 0.2511 REMARK 3 8 2.2688 - 2.1701 0.85 1412 132 0.2227 0.2339 REMARK 3 9 2.1701 - 2.0866 0.82 1386 133 0.2367 0.2902 REMARK 3 10 2.0866 - 2.0146 0.82 1381 136 0.2538 0.2915 REMARK 3 11 2.0146 - 1.9516 0.81 1368 138 0.2990 0.2764 REMARK 3 12 1.9516 - 1.8958 0.81 1378 140 0.3696 0.3516 REMARK 3 13 1.8958 - 1.8459 0.82 1356 128 0.4882 0.5238 REMARK 3 14 1.8459 - 1.8009 0.82 1390 140 0.6574 0.5656 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.2700 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1817 REMARK 3 ANGLE : 1.130 2465 REMARK 3 CHIRALITY : 0.041 288 REMARK 3 PLANARITY : 0.004 309 REMARK 3 DIHEDRAL : 14.203 555 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22477 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 51.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 13.25 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.18 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2QMT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE PH 6.5, 0.1 M REMARK 280 MAGNESIUM ACETATE, 20% W/V PEG 4000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.20200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.10100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.30300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 10 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR C 11 O HOH C 201 1.36 REMARK 500 O HOH A 218 O HOH A 240 1.62 REMARK 500 OD2 ASP C 36 O HOH C 202 1.72 REMARK 500 ND2 ASN B 8 O HOH B 101 1.90 REMARK 500 NZ LYS B 13 O HOH B 102 1.91 REMARK 500 O LYS B 10 O HOH B 102 2.00 REMARK 500 O HOH D 242 O HOH D 253 2.00 REMARK 500 O HOH D 245 O HOH D 253 2.04 REMARK 500 O HOH B 128 O HOH B 140 2.06 REMARK 500 O HOH D 205 O HOH D 226 2.07 REMARK 500 O HOH A 228 O HOH A 261 2.07 REMARK 500 OD1 ASN B 8 O HOH B 103 2.08 REMARK 500 OD1 ASP B 47 O HOH B 104 2.09 REMARK 500 N GLY B 41 O HOH B 105 2.11 REMARK 500 O HOH A 264 O HOH A 271 2.11 REMARK 500 O HOH D 211 O HOH D 218 2.12 REMARK 500 NE2 GLN C 32 O HOH C 203 2.12 REMARK 500 NE2 GLN A 32 O HOH A 201 2.14 REMARK 500 O HOH A 215 O HOH A 257 2.14 REMARK 500 O THR A 17 O HOH A 202 2.16 REMARK 500 O HOH D 251 O HOH D 255 2.17 REMARK 500 NE2 B2N B 35 O HOH B 106 2.18 REMARK 500 O HOH A 255 O HOH A 270 2.18 REMARK 500 OE2 GLU C 19 O HOH C 204 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 244 O HOH D 270 4564 2.13 REMARK 500 O HOH B 157 O HOH D 257 2764 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 72.59 -117.14 REMARK 500 ASN A 8 74.78 -118.58 REMARK 500 B2N A 35 -86.91 -11.72 REMARK 500 ASN B 8 75.23 -110.91 REMARK 500 ASN B 8 73.93 -110.27 REMARK 500 B2N B 35 -78.60 -7.57 REMARK 500 ASN C 8 63.94 -114.72 REMARK 500 B2N C 35 -60.22 -15.00 REMARK 500 ASN D 8 67.70 -113.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 B3A A 24 THR A 25 143.66 REMARK 500 B3K A 28 VAL A 29 143.10 REMARK 500 B3K A 31 GLN A 32 143.16 REMARK 500 ALA A 34 B2N A 35 139.36 REMARK 500 B3A B 24 THR B 25 143.64 REMARK 500 B3K B 28 VAL B 29 143.31 REMARK 500 B3K B 31 GLN B 32 143.36 REMARK 500 ALA B 34 B2N B 35 134.63 REMARK 500 B3A C 24 THR C 25 145.34 REMARK 500 B3K C 28 VAL C 29 143.43 REMARK 500 B3K C 31 GLN C 32 141.81 REMARK 500 ALA C 34 B2N C 35 142.12 REMARK 500 B3A D 24 THR D 25 144.23 REMARK 500 B3K D 28 VAL D 29 143.30 REMARK 500 B3K D 31 GLN D 32 143.99 REMARK 500 ALA D 34 B2N D 35 142.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 B3A A 24 -18.08 REMARK 500 B3K A 28 -17.95 REMARK 500 B3K A 31 -18.00 REMARK 500 B3A B 24 -18.23 REMARK 500 B3K B 28 -18.33 REMARK 500 B3K B 31 -17.92 REMARK 500 B3A C 24 -17.52 REMARK 500 B3K C 28 -17.74 REMARK 500 B3K C 31 -19.39 REMARK 500 B3A D 24 -17.91 REMARK 500 B3K D 28 -17.95 REMARK 500 B3K D 31 -17.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 258 O REMARK 620 2 HOH B 114 O 98.2 REMARK 620 3 HOH D 204 O 90.9 89.7 REMARK 620 4 HOH D 216 O 88.2 163.1 74.5 REMARK 620 5 HOH D 259 O 102.9 102.2 160.1 91.5 REMARK 620 6 HOH D 261 O 169.5 81.7 78.6 89.3 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALA B 34 and B2N B REMARK 800 35 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide B2N B 35 and ASP B REMARK 800 36 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU B 56 and NH2 B REMARK 800 57 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALA C 34 and B2N C REMARK 800 35 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide B2N C 35 and ASP C REMARK 800 36 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU C 56 and NH2 C REMARK 800 57 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALA D 34 and B2N D REMARK 800 35 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide B2N D 35 and ASP D REMARK 800 36 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLU D 56 and NH2 D REMARK 800 57 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HFY RELATED DB: PDB REMARK 900 RELATED ID: 5HI1 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 BACKBONE MODIFICATIONS IN THE PROTEIN GB1 HELIX: BETA-3-ALA24, BETA- REMARK 999 3-LYS28, BETA-3-LYS31, BETA-2-ASN35 DBREF 5HG2 A 1 56 UNP P19909 SPG2_STRSG 302 357 DBREF 5HG2 B 1 56 UNP P19909 SPG2_STRSG 302 357 DBREF 5HG2 C 1 56 UNP P19909 SPG2_STRSG 302 357 DBREF 5HG2 D 1 56 UNP P19909 SPG2_STRSG 302 357 SEQADV 5HG2 NH2 A 57 UNP P19909 AMIDATION SEQADV 5HG2 NH2 B 57 UNP P19909 AMIDATION SEQADV 5HG2 NH2 C 57 UNP P19909 AMIDATION SEQADV 5HG2 NH2 D 57 UNP P19909 AMIDATION SEQRES 1 A 57 ASP THR TYR LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 A 57 GLY GLU THR THR THR GLU ALA VAL ASP ALA B3A THR ALA SEQRES 3 A 57 GLU B3K VAL PHE B3K GLN TYR ALA B2N ASP ASN GLY VAL SEQRES 4 A 57 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 A 57 THR VAL THR GLU NH2 SEQRES 1 B 57 ASP THR TYR LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 B 57 GLY GLU THR THR THR GLU ALA VAL ASP ALA B3A THR ALA SEQRES 3 B 57 GLU B3K VAL PHE B3K GLN TYR ALA B2N ASP ASN GLY VAL SEQRES 4 B 57 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 B 57 THR VAL THR GLU NH2 SEQRES 1 C 57 ASP THR TYR LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 C 57 GLY GLU THR THR THR GLU ALA VAL ASP ALA B3A THR ALA SEQRES 3 C 57 GLU B3K VAL PHE B3K GLN TYR ALA B2N ASP ASN GLY VAL SEQRES 4 C 57 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 C 57 THR VAL THR GLU NH2 SEQRES 1 D 57 ASP THR TYR LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 D 57 GLY GLU THR THR THR GLU ALA VAL ASP ALA B3A THR ALA SEQRES 3 D 57 GLU B3K VAL PHE B3K GLN TYR ALA B2N ASP ASN GLY VAL SEQRES 4 D 57 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 D 57 THR VAL THR GLU NH2 MODRES 5HG2 B3A A 24 ALA MODIFIED RESIDUE MODRES 5HG2 B3K A 28 LYS MODIFIED RESIDUE MODRES 5HG2 B3K A 31 LYS MODIFIED RESIDUE MODRES 5HG2 B3A B 24 ALA MODIFIED RESIDUE MODRES 5HG2 B3K B 28 LYS MODIFIED RESIDUE MODRES 5HG2 B3K B 31 LYS MODIFIED RESIDUE MODRES 5HG2 B3A C 24 ALA MODIFIED RESIDUE MODRES 5HG2 B3K C 28 LYS MODIFIED RESIDUE MODRES 5HG2 B3K C 31 LYS MODIFIED RESIDUE MODRES 5HG2 B3A D 24 ALA MODIFIED RESIDUE MODRES 5HG2 B3K D 28 LYS MODIFIED RESIDUE MODRES 5HG2 B3K D 31 LYS MODIFIED RESIDUE HET B3A A 24 6 HET B3K A 28 10 HET B3K A 31 10 HET B2N A 35 9 HET NH2 A 57 1 HET B3A B 24 6 HET B3K B 28 10 HET B3K B 31 10 HET B2N B 35 9 HET NH2 B 57 1 HET B3A C 24 6 HET B3K C 28 10 HET B3K C 31 10 HET B2N C 35 9 HET NH2 C 57 1 HET B3A D 24 6 HET B3K D 28 10 HET B3K D 31 10 HET B2N D 35 9 HET NH2 D 57 1 HET GOL A 101 6 HET GOL C 101 6 HET GOL D 101 6 HET GOL D 102 6 HET MG D 103 1 HETNAM B3A (3S)-3-AMINOBUTANOIC ACID HETNAM B3K (3S)-3,7-DIAMINOHEPTANOIC ACID HETNAM B2N (2S)-4-AMINO-2-(AMINOMETHYL)-4-OXOBUTANOIC ACID HETNAM NH2 AMINO GROUP HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 B3A 4(C4 H9 N O2) FORMUL 1 B3K 8(C7 H16 N2 O2) FORMUL 1 B2N 4(C5 H10 N2 O3) FORMUL 1 NH2 4(H2 N) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 MG MG 2+ FORMUL 10 HOH *271(H2 O) HELIX 1 AA1 ASP A 22 ASN A 37 1 16 HELIX 2 AA2 ASP A 47 THR A 49 5 3 HELIX 3 AA3 ASP B 22 ASN B 37 1 16 HELIX 4 AA4 ASP C 22 ASN C 37 1 16 HELIX 5 AA5 ASP D 22 ASN D 37 1 16 HELIX 6 AA6 ASP D 47 THR D 49 5 3 SHEET 1 AA1 8 GLU A 42 ASP A 46 0 SHEET 2 AA1 8 THR A 51 THR A 55 -1 O THR A 53 N THR A 44 SHEET 3 AA1 8 THR A 2 ASN A 8 1 N LYS A 4 O PHE A 52 SHEET 4 AA1 8 LYS A 13 GLU A 19 -1 O THR A 16 N LEU A 5 SHEET 5 AA1 8 LYS D 13 GLU D 19 -1 O THR D 17 N LYS A 13 SHEET 6 AA1 8 THR D 2 ASN D 8 -1 N LEU D 5 O THR D 16 SHEET 7 AA1 8 THR D 51 THR D 55 1 O PHE D 52 N LYS D 4 SHEET 8 AA1 8 GLU D 42 ASP D 46 -1 N ASP D 46 O THR D 51 SHEET 1 AA2 8 GLU B 42 ASP B 46 0 SHEET 2 AA2 8 THR B 51 THR B 55 -1 O THR B 51 N ASP B 46 SHEET 3 AA2 8 THR B 2 ASN B 8 1 N LYS B 4 O PHE B 52 SHEET 4 AA2 8 LYS B 13 GLU B 19 -1 O THR B 16 N LEU B 5 SHEET 5 AA2 8 LYS C 13 GLU C 19 -1 O GLU C 15 N GLU B 15 SHEET 6 AA2 8 THR C 2 ASN C 8 -1 N LEU C 5 O THR C 16 SHEET 7 AA2 8 THR C 51 THR C 55 1 O PHE C 52 N LYS C 4 SHEET 8 AA2 8 GLU C 42 ASP C 46 -1 N GLU C 42 O THR C 55 LINK C ALA A 23 N B3A A 24 1555 1555 1.33 LINK C B3A A 24 N THR A 25 1555 1555 1.33 LINK C GLU A 27 N B3K A 28 1555 1555 1.32 LINK C B3K A 28 N VAL A 29 1555 1555 1.32 LINK C PHE A 30 N B3K A 31 1555 1555 1.33 LINK C B3K A 31 N GLN A 32 1555 1555 1.33 LINK C ALA A 34 N B2N A 35 1555 1555 1.30 LINK C B2N A 35 N ASP A 36 1555 1555 1.37 LINK C GLU A 56 N NH2 A 57 1555 1555 1.33 LINK C ALA B 23 N B3A B 24 1555 1555 1.33 LINK C B3A B 24 N THR B 25 1555 1555 1.33 LINK C GLU B 27 N B3K B 28 1555 1555 1.33 LINK C B3K B 28 N VAL B 29 1555 1555 1.33 LINK C PHE B 30 N B3K B 31 1555 1555 1.32 LINK C B3K B 31 N GLN B 32 1555 1555 1.33 LINK C ALA B 34 N B2N B 35 1555 1555 1.32 LINK C B2N B 35 N ASP B 36 1555 1555 1.33 LINK C GLU B 56 N NH2 B 57 1555 1555 1.33 LINK C ALA C 23 N B3A C 24 1555 1555 1.33 LINK C B3A C 24 N THR C 25 1555 1555 1.33 LINK C GLU C 27 N B3K C 28 1555 1555 1.32 LINK C B3K C 28 N VAL C 29 1555 1555 1.33 LINK C PHE C 30 N B3K C 31 1555 1555 1.30 LINK C B3K C 31 N GLN C 32 1555 1555 1.35 LINK C ALA C 34 N B2N C 35 1555 1555 1.33 LINK C B2N C 35 N ASP C 36 1555 1555 1.33 LINK C GLU C 56 N NH2 C 57 1555 1555 1.33 LINK C ALA D 23 N B3A D 24 1555 1555 1.32 LINK C B3A D 24 N THR D 25 1555 1555 1.33 LINK C GLU D 27 N B3K D 28 1555 1555 1.33 LINK C B3K D 28 N VAL D 29 1555 1555 1.32 LINK C PHE D 30 N B3K D 31 1555 1555 1.32 LINK C B3K D 31 N GLN D 32 1555 1555 1.30 LINK C ALA D 34 N B2N D 35 1555 1555 1.33 LINK C B2N D 35 N ASP D 36 1555 1555 1.33 LINK C GLU D 56 N NH2 D 57 1555 1555 1.32 LINK O HOH A 258 MG MG D 103 1555 1555 2.04 LINK O HOH B 114 MG MG D 103 2765 1555 2.09 LINK MG MG D 103 O HOH D 204 1555 1555 2.50 LINK MG MG D 103 O HOH D 216 1555 1555 2.18 LINK MG MG D 103 O HOH D 259 1555 1555 2.18 LINK MG MG D 103 O HOH D 261 1555 1555 2.58 SITE 1 AC1 5 ASP A 36 ASN A 37 GLY A 38 HOH A 237 SITE 2 AC1 5 ASP D 36 SITE 1 AC2 2 ASP C 47 HOH C 207 SITE 1 AC3 6 B3A D 24 THR D 25 B3K D 28 GOL D 102 SITE 2 AC3 6 HOH D 206 HOH D 237 SITE 1 AC4 5 B3A D 24 B3K D 28 GOL D 101 HOH D 205 SITE 2 AC4 5 HOH D 226 SITE 1 AC5 6 HOH A 258 HOH B 114 HOH D 204 HOH D 216 SITE 2 AC5 6 HOH D 259 HOH D 261 SITE 1 AC6 11 LYS A 4 PHE B 30 B3K B 31 GLN B 32 SITE 2 AC6 11 TYR B 33 ASP B 36 ASN B 37 GLY B 38 SITE 3 AC6 11 VAL B 39 TRP B 43 HOH B 106 SITE 1 AC7 9 LYS A 4 B3K B 31 GLN B 32 TYR B 33 SITE 2 AC7 9 ALA B 34 ASN B 37 GLY B 38 HOH B 106 SITE 3 AC7 9 HOH B 125 SITE 1 AC8 6 ASN B 8 GLY B 9 LYS B 10 VAL B 39 SITE 2 AC8 6 ASP B 40 THR B 55 SITE 1 AC9 9 PHE C 30 B3K C 31 GLN C 32 TYR C 33 SITE 2 AC9 9 ASP C 36 ASN C 37 GLY C 38 VAL C 39 SITE 3 AC9 9 TRP C 43 SITE 1 AD1 7 B3K C 31 GLN C 32 TYR C 33 ALA C 34 SITE 2 AD1 7 ASN C 37 GLY C 38 HOH C 202 SITE 1 AD2 8 ASN C 8 GLY C 9 LYS C 10 VAL C 39 SITE 2 AD2 8 ASP C 40 THR C 55 HOH C 227 HOH C 243 SITE 1 AD3 15 THR B 2 LYS B 4 THR B 49 LYS B 50 SITE 2 AD3 15 THR B 51 PHE D 30 B3K D 31 GLN D 32 SITE 3 AD3 15 TYR D 33 ASP D 36 ASN D 37 GLY D 38 SITE 4 AD3 15 VAL D 39 HOH D 228 HOH D 236 SITE 1 AD4 19 ASP A 36 GOL A 101 THR B 2 LYS B 4 SITE 2 AD4 19 THR B 49 LYS B 50 THR B 51 B3K D 31 SITE 3 AD4 19 GLN D 32 TYR D 33 ALA D 34 ASN D 37 SITE 4 AD4 19 GLY D 38 HOH D 204 HOH D 208 HOH D 216 SITE 5 AD4 19 HOH D 222 HOH D 228 HOH D 236 SITE 1 AD5 6 ASN D 8 GLY D 9 LYS D 10 ASP D 40 SITE 2 AD5 6 THR D 55 HOH D 203 CRYST1 51.947 51.947 96.404 90.00 90.00 90.00 P 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019250 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010373 0.00000