HEADER RNA BINDING PROTEIN 11-JAN-16 5HHJ TITLE REVERSE TRANSCRIPTASE DOMAIN OF GROUP II INTRON MATURASE FROM TITLE 2 ROSEBURIA INTESTINALIS IN P21 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETRON-TYPE REVERSE TRANSCRIPTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-305; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEBURIA INTESTINALIS XB6B4; SOURCE 3 ORGANISM_TAXID: 718255; SOURCE 4 GENE: RO1_37670; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GROUP II INTRON, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHAO,A.M.PYLE REVDAT 6 27-SEP-23 5HHJ 1 LINK REVDAT 5 25-DEC-19 5HHJ 1 REMARK REVDAT 4 27-SEP-17 5HHJ 1 REMARK REVDAT 3 22-JUN-16 5HHJ 1 JRNL REVDAT 2 25-MAY-16 5HHJ 1 JRNL REVDAT 1 04-MAY-16 5HHJ 0 JRNL AUTH C.ZHAO,A.M.PYLE JRNL TITL CRYSTAL STRUCTURES OF A GROUP II INTRON MATURASE REVEAL A JRNL TITL 2 MISSING LINK IN SPLICEOSOME EVOLUTION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 558 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27136328 JRNL DOI 10.1038/NSMB.3224 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2254: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 178006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0596 - 3.7280 0.98 5729 302 0.1454 0.1682 REMARK 3 2 3.7280 - 2.9592 0.99 5728 302 0.1308 0.1525 REMARK 3 3 2.9592 - 2.5852 0.98 5593 294 0.1336 0.1554 REMARK 3 4 2.5852 - 2.3488 1.00 5700 300 0.1210 0.1338 REMARK 3 5 2.3488 - 2.1805 1.00 5721 301 0.1126 0.1321 REMARK 3 6 2.1805 - 2.0519 1.00 5704 300 0.1119 0.1327 REMARK 3 7 2.0519 - 1.9492 0.99 5618 297 0.1138 0.1209 REMARK 3 8 1.9492 - 1.8643 0.99 5674 298 0.1123 0.1395 REMARK 3 9 1.8643 - 1.7925 1.00 5683 298 0.1111 0.1440 REMARK 3 10 1.7925 - 1.7307 1.00 5657 298 0.1047 0.1357 REMARK 3 11 1.7307 - 1.6766 1.00 5682 299 0.1056 0.1378 REMARK 3 12 1.6766 - 1.6286 1.00 5663 299 0.1000 0.1420 REMARK 3 13 1.6286 - 1.5858 1.00 5705 299 0.0975 0.1285 REMARK 3 14 1.5858 - 1.5471 0.99 5602 296 0.0945 0.1277 REMARK 3 15 1.5471 - 1.5119 0.99 5665 297 0.0925 0.1180 REMARK 3 16 1.5119 - 1.4797 1.00 5693 299 0.0983 0.1380 REMARK 3 17 1.4797 - 1.4501 1.00 5619 296 0.1029 0.1561 REMARK 3 18 1.4501 - 1.4228 1.00 5713 303 0.1032 0.1342 REMARK 3 19 1.4228 - 1.3973 1.00 5567 291 0.1076 0.1449 REMARK 3 20 1.3973 - 1.3737 0.99 5716 302 0.1089 0.1540 REMARK 3 21 1.3737 - 1.3515 0.99 5644 296 0.1141 0.1483 REMARK 3 22 1.3515 - 1.3307 0.99 5700 299 0.1149 0.1392 REMARK 3 23 1.3307 - 1.3111 0.99 5600 296 0.1198 0.1450 REMARK 3 24 1.3111 - 1.2927 0.99 5663 294 0.1252 0.1640 REMARK 3 25 1.2927 - 1.2752 0.99 5533 295 0.1322 0.1734 REMARK 3 26 1.2752 - 1.2586 0.98 5626 296 0.1411 0.1679 REMARK 3 27 1.2586 - 1.2429 0.98 5582 294 0.1501 0.1935 REMARK 3 28 1.2429 - 1.2279 0.98 5608 295 0.1536 0.1833 REMARK 3 29 1.2279 - 1.2136 0.97 5521 291 0.1974 0.2225 REMARK 3 30 1.2136 - 1.2000 0.93 5197 273 0.2378 0.2203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5142 REMARK 3 ANGLE : 1.122 6990 REMARK 3 CHIRALITY : 0.087 767 REMARK 3 PLANARITY : 0.008 922 REMARK 3 DIHEDRAL : 16.776 2111 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 178024 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 44.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5HHK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SPG PH 9.0, 23% PEG 1500, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.03000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 GLU A 11 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 GLY B 6 REMARK 465 THR B 7 REMARK 465 GLU B 8 REMARK 465 ARG B 9 REMARK 465 LYS B 10 REMARK 465 GLU B 11 REMARK 465 ARG B 12 REMARK 465 MET B 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 26 HH21 ARG A 30 1.52 REMARK 500 HH22 ARG B 184 O HOH B 502 1.56 REMARK 500 OD1 ASN B 25 O HOH B 501 1.95 REMARK 500 NH2 ARG B 184 O HOH B 502 2.08 REMARK 500 OG SER B 181 O4 PO4 B 402 2.11 REMARK 500 OD1 ASP A 26 O HOH A 506 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 19 CG - SD - CE ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 39 -122.05 54.87 REMARK 500 ALA A 237 -130.78 55.64 REMARK 500 LYS B 39 -122.82 50.64 REMARK 500 ALA B 237 -128.92 56.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 100 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 825 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 151 OD1 REMARK 620 2 ILE A 152 O 99.1 REMARK 620 3 ASP A 239 OD1 121.7 131.9 REMARK 620 4 CYS A 240 O 101.1 96.4 99.2 REMARK 620 5 HOH A 595 O 80.4 81.5 81.5 177.5 REMARK 620 6 HOH A 698 O 149.3 54.4 89.0 70.7 107.0 REMARK 620 7 HOH A 786 O 58.4 143.3 63.5 115.2 67.2 152.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 151 OD1 REMARK 620 2 ILE B 152 O 100.1 REMARK 620 3 ASP B 239 OD1 124.7 127.5 REMARK 620 4 CYS B 240 O 100.6 92.5 103.3 REMARK 620 5 HOH B 744 O 58.2 143.4 66.6 118.7 REMARK 620 6 HOH B 756 O 76.7 80.4 84.5 171.8 66.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HHK RELATED DB: PDB REMARK 900 RELATED ID: 5HHL RELATED DB: PDB DBREF 5HHJ A 1 305 UNP D4L313 D4L313_9FIRM 1 305 DBREF 5HHJ B 1 305 UNP D4L313 D4L313_9FIRM 1 305 SEQRES 1 A 305 MET VAL LYS SER SER GLY THR GLU ARG LYS GLU ARG MET SEQRES 2 A 305 ASP THR SER SER LEU MET GLU GLN ILE LEU SER ASN ASP SEQRES 3 A 305 ASN LEU ASN ARG ALA TYR LEU GLN VAL VAL ARG ASN LYS SEQRES 4 A 305 GLY ALA GLU GLY VAL ASP GLY MET LYS TYR THR GLU LEU SEQRES 5 A 305 LYS GLU TYR LEU ALA LYS ASN GLY GLU ILE ILE LYS GLU SEQRES 6 A 305 GLN LEU ARG ILE ARG LYS TYR LYS PRO GLN PRO VAL ARG SEQRES 7 A 305 ARG VAL GLU ILE PRO LYS PRO ASP GLY GLY VAL ARG ASN SEQRES 8 A 305 LEU GLY VAL PRO THR VAL THR ASP ARG PHE ILE GLN GLN SEQRES 9 A 305 ALA ILE ALA GLN VAL LEU THR PRO ILE TYR GLU GLU GLN SEQRES 10 A 305 PHE HIS ASP HIS SER TYR GLY PHE ARG PRO ASN ARG CYS SEQRES 11 A 305 ALA GLN GLN ALA ILE LEU THR ALA LEU ASP MET MET ASN SEQRES 12 A 305 ASP GLY ASN ASP TRP ILE VAL ASP ILE ASP LEU GLU LYS SEQRES 13 A 305 PHE PHE ASP THR VAL ASN HIS ASP LYS LEU MET THR ILE SEQRES 14 A 305 ILE GLY ARG THR ILE LYS ASP GLY ASP VAL ILE SER ILE SEQRES 15 A 305 VAL ARG LYS TYR LEU VAL SER GLY ILE MET ILE ASP ASP SEQRES 16 A 305 GLU TYR GLU ASP SER ILE VAL GLY THR PRO GLN GLY GLY SEQRES 17 A 305 ASN LEU SER PRO LEU LEU ALA ASN ILE MET LEU ASN GLU SEQRES 18 A 305 LEU ASP LYS GLU MET GLU LYS ARG GLY LEU ASN PHE VAL SEQRES 19 A 305 ARG TYR ALA ASP ASP CYS ILE ILE MET VAL GLY SER GLU SEQRES 20 A 305 MET SER ALA ASN ARG VAL MET ARG ASN ILE SER ARG PHE SEQRES 21 A 305 ILE GLU GLU LYS LEU GLY LEU LYS VAL ASN MET THR LYS SEQRES 22 A 305 SER LYS VAL ASP ARG PRO ARG GLY ILE LYS TYR LEU GLY SEQRES 23 A 305 PHE GLY PHE TYR TYR ASP THR SER ALA GLN GLN PHE LYS SEQRES 24 A 305 ALA LYS PRO HIS ALA LYS SEQRES 1 B 305 MET VAL LYS SER SER GLY THR GLU ARG LYS GLU ARG MET SEQRES 2 B 305 ASP THR SER SER LEU MET GLU GLN ILE LEU SER ASN ASP SEQRES 3 B 305 ASN LEU ASN ARG ALA TYR LEU GLN VAL VAL ARG ASN LYS SEQRES 4 B 305 GLY ALA GLU GLY VAL ASP GLY MET LYS TYR THR GLU LEU SEQRES 5 B 305 LYS GLU TYR LEU ALA LYS ASN GLY GLU ILE ILE LYS GLU SEQRES 6 B 305 GLN LEU ARG ILE ARG LYS TYR LYS PRO GLN PRO VAL ARG SEQRES 7 B 305 ARG VAL GLU ILE PRO LYS PRO ASP GLY GLY VAL ARG ASN SEQRES 8 B 305 LEU GLY VAL PRO THR VAL THR ASP ARG PHE ILE GLN GLN SEQRES 9 B 305 ALA ILE ALA GLN VAL LEU THR PRO ILE TYR GLU GLU GLN SEQRES 10 B 305 PHE HIS ASP HIS SER TYR GLY PHE ARG PRO ASN ARG CYS SEQRES 11 B 305 ALA GLN GLN ALA ILE LEU THR ALA LEU ASP MET MET ASN SEQRES 12 B 305 ASP GLY ASN ASP TRP ILE VAL ASP ILE ASP LEU GLU LYS SEQRES 13 B 305 PHE PHE ASP THR VAL ASN HIS ASP LYS LEU MET THR ILE SEQRES 14 B 305 ILE GLY ARG THR ILE LYS ASP GLY ASP VAL ILE SER ILE SEQRES 15 B 305 VAL ARG LYS TYR LEU VAL SER GLY ILE MET ILE ASP ASP SEQRES 16 B 305 GLU TYR GLU ASP SER ILE VAL GLY THR PRO GLN GLY GLY SEQRES 17 B 305 ASN LEU SER PRO LEU LEU ALA ASN ILE MET LEU ASN GLU SEQRES 18 B 305 LEU ASP LYS GLU MET GLU LYS ARG GLY LEU ASN PHE VAL SEQRES 19 B 305 ARG TYR ALA ASP ASP CYS ILE ILE MET VAL GLY SER GLU SEQRES 20 B 305 MET SER ALA ASN ARG VAL MET ARG ASN ILE SER ARG PHE SEQRES 21 B 305 ILE GLU GLU LYS LEU GLY LEU LYS VAL ASN MET THR LYS SEQRES 22 B 305 SER LYS VAL ASP ARG PRO ARG GLY ILE LYS TYR LEU GLY SEQRES 23 B 305 PHE GLY PHE TYR TYR ASP THR SER ALA GLN GLN PHE LYS SEQRES 24 B 305 ALA LYS PRO HIS ALA LYS HET PO4 A 401 5 HET K A 402 1 HET GLY A 403 7 HET GLY A 404 7 HET SIN A 405 12 HET MPD B 401 22 HET PO4 B 402 5 HET K B 403 1 HET GLY B 404 7 HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION HETNAM GLY GLYCINE HETNAM SIN SUCCINIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 K 2(K 1+) FORMUL 5 GLY 3(C2 H5 N O2) FORMUL 7 SIN C4 H6 O4 FORMUL 8 MPD C6 H14 O2 FORMUL 12 HOH *787(H2 O) HELIX 1 AA1 LEU A 18 LEU A 23 1 6 HELIX 2 AA2 SER A 24 LYS A 39 1 16 HELIX 3 AA3 LYS A 48 THR A 50 5 3 HELIX 4 AA4 GLU A 51 ILE A 69 1 19 HELIX 5 AA5 THR A 96 GLU A 116 1 21 HELIX 6 AA6 CYS A 130 ASP A 144 1 15 HELIX 7 AA7 LYS A 156 VAL A 161 1 6 HELIX 8 AA8 ASN A 162 ARG A 172 1 11 HELIX 9 AA9 ASP A 176 GLY A 190 1 15 HELIX 10 AB1 ASP A 195 SER A 200 5 6 HELIX 11 AB2 LEU A 210 ARG A 229 1 20 HELIX 12 AB3 SER A 246 LEU A 265 1 20 HELIX 13 AB4 ARG A 278 GLY A 281 5 4 HELIX 14 AB5 LEU B 18 LEU B 23 1 6 HELIX 15 AB6 SER B 24 LYS B 39 1 16 HELIX 16 AB7 LYS B 48 THR B 50 5 3 HELIX 17 AB8 GLU B 51 ILE B 69 1 19 HELIX 18 AB9 THR B 96 GLU B 116 1 21 HELIX 19 AC1 CYS B 130 ASP B 144 1 15 HELIX 20 AC2 LYS B 156 VAL B 161 1 6 HELIX 21 AC3 ASN B 162 ARG B 172 1 11 HELIX 22 AC4 ASP B 176 GLY B 190 1 15 HELIX 23 AC5 ASP B 195 SER B 200 5 6 HELIX 24 AC6 LEU B 210 ARG B 229 1 20 HELIX 25 AC7 SER B 246 LYS B 264 1 19 HELIX 26 AC8 ARG B 278 GLY B 281 5 4 SHEET 1 AA1 2 ARG A 78 PRO A 83 0 SHEET 2 AA1 2 VAL A 89 VAL A 94 -1 O ARG A 90 N ILE A 82 SHEET 1 AA2 4 ASN A 232 TYR A 236 0 SHEET 2 AA2 4 ASP A 239 VAL A 244 -1 O MET A 243 N ASN A 232 SHEET 3 AA2 4 TRP A 148 ASP A 151 -1 N VAL A 150 O ILE A 242 SHEET 4 AA2 4 LYS A 275 ASP A 277 -1 O ASP A 277 N ILE A 149 SHEET 1 AA3 3 LYS A 283 TYR A 284 0 SHEET 2 AA3 3 PHE A 287 ASP A 292 -1 O PHE A 287 N TYR A 284 SHEET 3 AA3 3 GLN A 297 PRO A 302 -1 O GLN A 297 N ASP A 292 SHEET 1 AA4 2 ARG B 78 PRO B 83 0 SHEET 2 AA4 2 VAL B 89 VAL B 94 -1 O ARG B 90 N ILE B 82 SHEET 1 AA5 4 ASN B 232 TYR B 236 0 SHEET 2 AA5 4 ASP B 239 VAL B 244 -1 O MET B 243 N ASN B 232 SHEET 3 AA5 4 TRP B 148 ILE B 152 -1 N TRP B 148 O VAL B 244 SHEET 4 AA5 4 LYS B 275 ASP B 277 -1 O ASP B 277 N ILE B 149 SHEET 1 AA6 3 LYS B 283 TYR B 284 0 SHEET 2 AA6 3 PHE B 287 ASP B 292 -1 O PHE B 287 N TYR B 284 SHEET 3 AA6 3 GLN B 297 PRO B 302 -1 O LYS B 301 N GLY B 288 LINK OD1 ASP A 151 K K A 402 1555 1555 2.60 LINK O ILE A 152 K K A 402 1555 1555 2.74 LINK OD1 ASP A 239 K K A 402 1555 1555 2.67 LINK O CYS A 240 K K A 402 1555 1555 2.77 LINK K K A 402 O HOH A 595 1555 1555 2.99 LINK K K A 402 O HOH A 698 1555 1555 3.31 LINK K K A 402 O HOH A 786 1555 1555 3.29 LINK OD1 ASP B 151 K K B 403 1555 1555 2.52 LINK O ILE B 152 K K B 403 1555 1555 2.71 LINK OD1 ASP B 239 K K B 403 1555 1555 2.58 LINK O CYS B 240 K K B 403 1555 1555 2.73 LINK K K B 403 O HOH B 744 1555 1555 3.36 LINK K K B 403 O HOH B 756 1555 1555 2.90 SITE 1 AC1 7 ARG A 70 SER A 181 SIN A 405 HOH A 511 SITE 2 AC1 7 HOH A 524 HOH A 572 HOH A 736 SITE 1 AC2 5 ASP A 151 ILE A 152 ASP A 239 CYS A 240 SITE 2 AC2 5 HOH A 595 SITE 1 AC3 1 LEU A 56 SITE 1 AC4 4 TYR A 55 ILE A 63 GLN A 66 HOH B 663 SITE 1 AC5 3 ARG A 70 GLY A 177 PO4 A 401 SITE 1 AC6 8 PRO A 83 GLN A 117 HOH A 766 HOH A 840 SITE 2 AC6 8 TYR B 290 TYR B 291 ASP B 292 THR B 293 SITE 1 AC7 6 ARG B 70 SER B 181 HOH B 512 HOH B 520 SITE 2 AC7 6 HOH B 661 HOH B 676 SITE 1 AC8 5 ASP B 151 ILE B 152 ASP B 239 CYS B 240 SITE 2 AC8 5 HOH B 756 SITE 1 AC9 4 GLN B 104 ALA B 107 THR B 111 HOH B 523 CRYST1 42.080 88.060 79.760 90.00 95.44 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023764 0.000000 0.002264 0.00000 SCALE2 0.000000 0.011356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012594 0.00000