HEADER RNA BINDING PROTEIN 11-JAN-16 5HHK TITLE REVERSE TRANSCRIPTASE DOMAIN OF GROUP II INTRON MATURASE FROM TITLE 2 ROSEBURIA INTESTINALIS IN P21 SPACE GROUP (SE-MET) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETRON-TYPE REVERSE TRANSCRIPTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-305; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEBURIA INTESTINALIS XB6B4; SOURCE 3 ORGANISM_TAXID: 718255; SOURCE 4 GENE: RO1_37670; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GROUP II INTRON, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHAO,A.M.PYLE REVDAT 5 25-DEC-19 5HHK 1 REMARK REVDAT 4 27-SEP-17 5HHK 1 REMARK REVDAT 3 22-JUN-16 5HHK 1 JRNL REVDAT 2 25-MAY-16 5HHK 1 JRNL REVDAT 1 04-MAY-16 5HHK 0 JRNL AUTH C.ZHAO,A.M.PYLE JRNL TITL CRYSTAL STRUCTURES OF A GROUP II INTRON MATURASE REVEAL A JRNL TITL 2 MISSING LINK IN SPLICEOSOME EVOLUTION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 558 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27136328 JRNL DOI 10.1038/NSMB.3224 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2254: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.170 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 104342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0818 - 4.3488 0.99 7028 372 0.1496 0.1808 REMARK 3 2 4.3488 - 3.4522 0.99 7031 368 0.1222 0.1449 REMARK 3 3 3.4522 - 3.0159 0.99 7045 374 0.1341 0.1932 REMARK 3 4 3.0159 - 2.7402 0.99 7015 367 0.1430 0.1743 REMARK 3 5 2.7402 - 2.5439 0.99 7024 373 0.1447 0.1751 REMARK 3 6 2.5439 - 2.3939 0.99 6965 371 0.1360 0.1656 REMARK 3 7 2.3939 - 2.2740 0.98 6976 359 0.1342 0.1672 REMARK 3 8 2.2740 - 2.1750 0.98 6951 371 0.1362 0.1930 REMARK 3 9 2.1750 - 2.0913 0.98 6909 367 0.1302 0.1534 REMARK 3 10 2.0913 - 2.0191 0.98 6966 368 0.1372 0.1601 REMARK 3 11 2.0191 - 1.9560 0.98 6957 367 0.1340 0.1612 REMARK 3 12 1.9560 - 1.9001 0.98 6849 359 0.1414 0.1673 REMARK 3 13 1.9001 - 1.8501 0.97 6964 370 0.1450 0.1767 REMARK 3 14 1.8501 - 1.8049 0.97 6840 359 0.1561 0.2004 REMARK 3 15 1.8049 - 1.7639 0.97 6848 361 0.1596 0.1951 REMARK 3 16 1.7639 - 1.7263 0.97 6986 369 0.1741 0.2159 REMARK 3 17 1.7263 - 1.6918 0.97 6792 355 0.1918 0.2367 REMARK 3 18 1.6918 - 1.6599 0.97 6892 365 0.1852 0.2157 REMARK 3 19 1.6599 - 1.6302 0.96 6825 357 0.1888 0.2184 REMARK 3 20 1.6302 - 1.6026 0.96 6827 361 0.1957 0.2225 REMARK 3 21 1.6026 - 1.5768 0.96 6886 357 0.2060 0.2293 REMARK 3 22 1.5768 - 1.5525 0.96 6742 354 0.2081 0.2369 REMARK 3 23 1.5525 - 1.5297 0.96 6876 367 0.2227 0.2385 REMARK 3 24 1.5297 - 1.5081 0.96 6735 349 0.2284 0.2484 REMARK 3 25 1.5081 - 1.4877 0.96 6801 355 0.2439 0.2805 REMARK 3 26 1.4877 - 1.4684 0.95 6752 356 0.2552 0.2661 REMARK 3 27 1.4684 - 1.4501 0.95 6738 351 0.2712 0.3015 REMARK 3 28 1.4501 - 1.4326 0.95 6840 362 0.2812 0.3037 REMARK 3 29 1.4326 - 1.4159 0.95 6688 352 0.2994 0.3113 REMARK 3 30 1.4159 - 1.4000 0.94 6609 348 0.3290 0.3303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5025 REMARK 3 ANGLE : 0.984 6811 REMARK 3 CHIRALITY : 0.084 744 REMARK 3 PLANARITY : 0.006 893 REMARK 3 DIHEDRAL : 16.325 2030 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104342 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD, AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SPG PH 9.0, 23 % PEG 1500, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.06000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 GLU A 11 REMARK 465 ARG A 12 REMARK 465 MSE B 1 REMARK 465 VAL B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 GLY B 6 REMARK 465 THR B 7 REMARK 465 GLU B 8 REMARK 465 ARG B 9 REMARK 465 LYS B 10 REMARK 465 GLU B 11 REMARK 465 ARG B 12 REMARK 465 MSE B 13 REMARK 465 ASP B 14 REMARK 465 THR B 15 REMARK 465 SER B 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 140 O HOH B 501 1.97 REMARK 500 O HOH A 518 O HOH A 674 2.08 REMARK 500 O HOH A 554 O HOH A 616 2.10 REMARK 500 O HOH A 508 O HOH A 774 2.13 REMARK 500 OE1 GLU B 42 O HOH B 502 2.13 REMARK 500 O3 PO4 B 402 O HOH B 503 2.14 REMARK 500 O HOH B 616 O HOH B 765 2.16 REMARK 500 O HOH A 509 O HOH A 902 2.17 REMARK 500 NH1 ARG B 255 O HOH B 504 2.17 REMARK 500 O HOH B 718 O HOH B 775 2.17 REMARK 500 NH2 ARG B 184 O HOH B 505 2.17 REMARK 500 NH1 ARG A 184 O HOH A 502 2.17 REMARK 500 OE1 GLN A 75 O HOH A 503 2.18 REMARK 500 O HOH A 508 O HOH A 847 2.18 REMARK 500 O HOH A 703 O HOH A 804 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 252 O1 PO4 A 401 2747 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 39 -123.22 55.85 REMARK 500 ALA A 237 -129.49 54.41 REMARK 500 LYS B 39 -123.55 48.72 REMARK 500 ALA B 237 -126.98 54.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 967 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 151 OD1 REMARK 620 2 ILE A 152 O 100.1 REMARK 620 3 ASP A 239 OD1 120.1 131.3 REMARK 620 4 CYS A 240 O 102.8 95.6 100.6 REMARK 620 5 HOH A 704 O 150.5 53.9 89.4 70.1 REMARK 620 6 HOH A 655 O 81.0 81.4 79.2 175.6 105.5 REMARK 620 7 HOH A 774 O 59.0 143.9 61.2 116.6 150.3 67.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 151 OD1 REMARK 620 2 ILE B 152 O 101.4 REMARK 620 3 ASP B 239 OD1 124.8 124.8 REMARK 620 4 CYS B 240 O 102.5 91.0 105.0 REMARK 620 5 HOH B 761 O 79.7 77.1 82.7 168.1 REMARK 620 6 HOH B 674 O 55.4 142.9 69.3 120.2 70.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HHJ RELATED DB: PDB REMARK 900 RELATED ID: 5HHL RELATED DB: PDB DBREF 5HHK A 1 305 UNP D4L313 D4L313_9FIRM 1 305 DBREF 5HHK B 1 305 UNP D4L313 D4L313_9FIRM 1 305 SEQRES 1 A 305 MSE VAL LYS SER SER GLY THR GLU ARG LYS GLU ARG MSE SEQRES 2 A 305 ASP THR SER SER LEU MSE GLU GLN ILE LEU SER ASN ASP SEQRES 3 A 305 ASN LEU ASN ARG ALA TYR LEU GLN VAL VAL ARG ASN LYS SEQRES 4 A 305 GLY ALA GLU GLY VAL ASP GLY MSE LYS TYR THR GLU LEU SEQRES 5 A 305 LYS GLU TYR LEU ALA LYS ASN GLY GLU ILE ILE LYS GLU SEQRES 6 A 305 GLN LEU ARG ILE ARG LYS TYR LYS PRO GLN PRO VAL ARG SEQRES 7 A 305 ARG VAL GLU ILE PRO LYS PRO ASP GLY GLY VAL ARG ASN SEQRES 8 A 305 LEU GLY VAL PRO THR VAL THR ASP ARG PHE ILE GLN GLN SEQRES 9 A 305 ALA ILE ALA GLN VAL LEU THR PRO ILE TYR GLU GLU GLN SEQRES 10 A 305 PHE HIS ASP HIS SER TYR GLY PHE ARG PRO ASN ARG CYS SEQRES 11 A 305 ALA GLN GLN ALA ILE LEU THR ALA LEU ASP MSE MSE ASN SEQRES 12 A 305 ASP GLY ASN ASP TRP ILE VAL ASP ILE ASP LEU GLU LYS SEQRES 13 A 305 PHE PHE ASP THR VAL ASN HIS ASP LYS LEU MSE THR ILE SEQRES 14 A 305 ILE GLY ARG THR ILE LYS ASP GLY ASP VAL ILE SER ILE SEQRES 15 A 305 VAL ARG LYS TYR LEU VAL SER GLY ILE MSE ILE ASP ASP SEQRES 16 A 305 GLU TYR GLU ASP SER ILE VAL GLY THR PRO GLN GLY GLY SEQRES 17 A 305 ASN LEU SER PRO LEU LEU ALA ASN ILE MSE LEU ASN GLU SEQRES 18 A 305 LEU ASP LYS GLU MSE GLU LYS ARG GLY LEU ASN PHE VAL SEQRES 19 A 305 ARG TYR ALA ASP ASP CYS ILE ILE MSE VAL GLY SER GLU SEQRES 20 A 305 MSE SER ALA ASN ARG VAL MSE ARG ASN ILE SER ARG PHE SEQRES 21 A 305 ILE GLU GLU LYS LEU GLY LEU LYS VAL ASN MSE THR LYS SEQRES 22 A 305 SER LYS VAL ASP ARG PRO ARG GLY ILE LYS TYR LEU GLY SEQRES 23 A 305 PHE GLY PHE TYR TYR ASP THR SER ALA GLN GLN PHE LYS SEQRES 24 A 305 ALA LYS PRO HIS ALA LYS SEQRES 1 B 305 MSE VAL LYS SER SER GLY THR GLU ARG LYS GLU ARG MSE SEQRES 2 B 305 ASP THR SER SER LEU MSE GLU GLN ILE LEU SER ASN ASP SEQRES 3 B 305 ASN LEU ASN ARG ALA TYR LEU GLN VAL VAL ARG ASN LYS SEQRES 4 B 305 GLY ALA GLU GLY VAL ASP GLY MSE LYS TYR THR GLU LEU SEQRES 5 B 305 LYS GLU TYR LEU ALA LYS ASN GLY GLU ILE ILE LYS GLU SEQRES 6 B 305 GLN LEU ARG ILE ARG LYS TYR LYS PRO GLN PRO VAL ARG SEQRES 7 B 305 ARG VAL GLU ILE PRO LYS PRO ASP GLY GLY VAL ARG ASN SEQRES 8 B 305 LEU GLY VAL PRO THR VAL THR ASP ARG PHE ILE GLN GLN SEQRES 9 B 305 ALA ILE ALA GLN VAL LEU THR PRO ILE TYR GLU GLU GLN SEQRES 10 B 305 PHE HIS ASP HIS SER TYR GLY PHE ARG PRO ASN ARG CYS SEQRES 11 B 305 ALA GLN GLN ALA ILE LEU THR ALA LEU ASP MSE MSE ASN SEQRES 12 B 305 ASP GLY ASN ASP TRP ILE VAL ASP ILE ASP LEU GLU LYS SEQRES 13 B 305 PHE PHE ASP THR VAL ASN HIS ASP LYS LEU MSE THR ILE SEQRES 14 B 305 ILE GLY ARG THR ILE LYS ASP GLY ASP VAL ILE SER ILE SEQRES 15 B 305 VAL ARG LYS TYR LEU VAL SER GLY ILE MSE ILE ASP ASP SEQRES 16 B 305 GLU TYR GLU ASP SER ILE VAL GLY THR PRO GLN GLY GLY SEQRES 17 B 305 ASN LEU SER PRO LEU LEU ALA ASN ILE MSE LEU ASN GLU SEQRES 18 B 305 LEU ASP LYS GLU MSE GLU LYS ARG GLY LEU ASN PHE VAL SEQRES 19 B 305 ARG TYR ALA ASP ASP CYS ILE ILE MSE VAL GLY SER GLU SEQRES 20 B 305 MSE SER ALA ASN ARG VAL MSE ARG ASN ILE SER ARG PHE SEQRES 21 B 305 ILE GLU GLU LYS LEU GLY LEU LYS VAL ASN MSE THR LYS SEQRES 22 B 305 SER LYS VAL ASP ARG PRO ARG GLY ILE LYS TYR LEU GLY SEQRES 23 B 305 PHE GLY PHE TYR TYR ASP THR SER ALA GLN GLN PHE LYS SEQRES 24 B 305 ALA LYS PRO HIS ALA LYS MODRES 5HHK MSE A 13 MET MODIFIED RESIDUE MODRES 5HHK MSE A 19 MET MODIFIED RESIDUE MODRES 5HHK MSE A 47 MET MODIFIED RESIDUE MODRES 5HHK MSE A 141 MET MODIFIED RESIDUE MODRES 5HHK MSE A 142 MET MODIFIED RESIDUE MODRES 5HHK MSE A 167 MET MODIFIED RESIDUE MODRES 5HHK MSE A 192 MET MODIFIED RESIDUE MODRES 5HHK MSE A 218 MET MODIFIED RESIDUE MODRES 5HHK MSE A 226 MET MODIFIED RESIDUE MODRES 5HHK MSE A 243 MET MODIFIED RESIDUE MODRES 5HHK MSE A 248 MET MODIFIED RESIDUE MODRES 5HHK MSE A 254 MET MODIFIED RESIDUE MODRES 5HHK MSE A 271 MET MODIFIED RESIDUE MODRES 5HHK MSE B 19 MET MODIFIED RESIDUE MODRES 5HHK MSE B 47 MET MODIFIED RESIDUE MODRES 5HHK MSE B 141 MET MODIFIED RESIDUE MODRES 5HHK MSE B 142 MET MODIFIED RESIDUE MODRES 5HHK MSE B 167 MET MODIFIED RESIDUE MODRES 5HHK MSE B 192 MET MODIFIED RESIDUE MODRES 5HHK MSE B 218 MET MODIFIED RESIDUE MODRES 5HHK MSE B 226 MET MODIFIED RESIDUE MODRES 5HHK MSE B 243 MET MODIFIED RESIDUE MODRES 5HHK MSE B 248 MET MODIFIED RESIDUE MODRES 5HHK MSE B 254 MET MODIFIED RESIDUE MODRES 5HHK MSE B 271 MET MODIFIED RESIDUE HET MSE A 13 8 HET MSE A 19 8 HET MSE A 47 8 HET MSE A 141 8 HET MSE A 142 8 HET MSE A 167 8 HET MSE A 192 13 HET MSE A 218 13 HET MSE A 226 8 HET MSE A 243 8 HET MSE A 248 13 HET MSE A 254 13 HET MSE A 271 8 HET MSE B 19 8 HET MSE B 47 8 HET MSE B 141 8 HET MSE B 142 8 HET MSE B 167 8 HET MSE B 192 13 HET MSE B 218 13 HET MSE B 226 8 HET MSE B 243 8 HET MSE B 248 13 HET MSE B 254 13 HET MSE B 271 8 HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET K A 404 1 HET GLY A 405 5 HET MPD B 401 8 HET PO4 B 402 5 HET K B 403 1 HET GLY B 404 5 HET GLY B 405 5 HET GLY B 406 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION HETNAM GLY GLYCINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 25(C5 H11 N O2 SE) FORMUL 3 PO4 4(O4 P 3-) FORMUL 6 K 2(K 1+) FORMUL 7 GLY 4(C2 H5 N O2) FORMUL 8 MPD C6 H14 O2 FORMUL 14 HOH *814(H2 O) HELIX 1 AA1 LEU A 18 LEU A 23 1 6 HELIX 2 AA2 SER A 24 LYS A 39 1 16 HELIX 3 AA3 LYS A 48 THR A 50 5 3 HELIX 4 AA4 GLU A 51 ILE A 69 1 19 HELIX 5 AA5 THR A 96 GLU A 116 1 21 HELIX 6 AA6 CYS A 130 ASP A 144 1 15 HELIX 7 AA7 LYS A 156 VAL A 161 1 6 HELIX 8 AA8 ASN A 162 ILE A 174 1 13 HELIX 9 AA9 ASP A 176 GLY A 190 1 15 HELIX 10 AB1 ASP A 195 SER A 200 5 6 HELIX 11 AB2 LEU A 210 ARG A 229 1 20 HELIX 12 AB3 SER A 246 GLY A 266 1 21 HELIX 13 AB4 ARG A 278 GLY A 281 5 4 HELIX 14 AB5 LEU B 18 LEU B 23 1 6 HELIX 15 AB6 SER B 24 LYS B 39 1 16 HELIX 16 AB7 LYS B 48 THR B 50 5 3 HELIX 17 AB8 GLU B 51 ILE B 69 1 19 HELIX 18 AB9 THR B 96 GLU B 116 1 21 HELIX 19 AC1 CYS B 130 ASP B 144 1 15 HELIX 20 AC2 LYS B 156 VAL B 161 1 6 HELIX 21 AC3 ASN B 162 ILE B 174 1 13 HELIX 22 AC4 ASP B 176 GLY B 190 1 15 HELIX 23 AC5 ASP B 195 SER B 200 5 6 HELIX 24 AC6 LEU B 210 ARG B 229 1 20 HELIX 25 AC7 SER B 246 LYS B 264 1 19 HELIX 26 AC8 ARG B 278 GLY B 281 5 4 SHEET 1 AA1 2 ARG A 78 PRO A 83 0 SHEET 2 AA1 2 VAL A 89 VAL A 94 -1 O ARG A 90 N ILE A 82 SHEET 1 AA2 4 ASN A 232 TYR A 236 0 SHEET 2 AA2 4 ASP A 239 VAL A 244 -1 O MSE A 243 N ASN A 232 SHEET 3 AA2 4 TRP A 148 ILE A 152 -1 N TRP A 148 O VAL A 244 SHEET 4 AA2 4 LYS A 275 ASP A 277 -1 O ASP A 277 N ILE A 149 SHEET 1 AA3 3 LYS A 283 TYR A 284 0 SHEET 2 AA3 3 PHE A 287 ASP A 292 -1 O PHE A 287 N TYR A 284 SHEET 3 AA3 3 GLN A 297 PRO A 302 -1 O GLN A 297 N ASP A 292 SHEET 1 AA4 2 ARG B 78 PRO B 83 0 SHEET 2 AA4 2 VAL B 89 VAL B 94 -1 O LEU B 92 N VAL B 80 SHEET 1 AA5 4 ASN B 232 TYR B 236 0 SHEET 2 AA5 4 ASP B 239 VAL B 244 -1 O MSE B 243 N ASN B 232 SHEET 3 AA5 4 TRP B 148 ILE B 152 -1 N TRP B 148 O VAL B 244 SHEET 4 AA5 4 LYS B 275 ASP B 277 -1 O ASP B 277 N ILE B 149 SHEET 1 AA6 3 LYS B 283 TYR B 284 0 SHEET 2 AA6 3 PHE B 287 ASP B 292 -1 O PHE B 287 N TYR B 284 SHEET 3 AA6 3 GLN B 297 PRO B 302 -1 O LYS B 301 N GLY B 288 LINK C MSE A 13 N ASP A 14 1555 1555 1.34 LINK C LEU A 18 N MSE A 19 1555 1555 1.33 LINK C MSE A 19 N GLU A 20 1555 1555 1.34 LINK C GLY A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N LYS A 48 1555 1555 1.33 LINK C ASP A 140 N MSE A 141 1555 1555 1.33 LINK C MSE A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N ASN A 143 1555 1555 1.34 LINK OD1 ASP A 151 K K A 404 1555 1555 2.64 LINK O ILE A 152 K K A 404 1555 1555 2.73 LINK C LEU A 166 N MSE A 167 1555 1555 1.33 LINK C MSE A 167 N THR A 168 1555 1555 1.33 LINK C ILE A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N ILE A 193 1555 1555 1.33 LINK C ILE A 217 N MSE A 218 1555 1555 1.32 LINK C MSE A 218 N LEU A 219 1555 1555 1.32 LINK C GLU A 225 N MSE A 226 1555 1555 1.32 LINK C MSE A 226 N GLU A 227 1555 1555 1.34 LINK OD1 ASP A 239 K K A 404 1555 1555 2.67 LINK O CYS A 240 K K A 404 1555 1555 2.80 LINK C ILE A 242 N MSE A 243 1555 1555 1.33 LINK C MSE A 243 N VAL A 244 1555 1555 1.33 LINK C GLU A 247 N MSE A 248 1555 1555 1.32 LINK C MSE A 248 N SER A 249 1555 1555 1.33 LINK C VAL A 253 N MSE A 254 1555 1555 1.33 LINK C MSE A 254 N ARG A 255 1555 1555 1.34 LINK C ASN A 270 N MSE A 271 1555 1555 1.32 LINK C MSE A 271 N THR A 272 1555 1555 1.33 LINK C LEU B 18 N MSE B 19 1555 1555 1.33 LINK C MSE B 19 N GLU B 20 1555 1555 1.34 LINK C GLY B 46 N MSE B 47 1555 1555 1.33 LINK C MSE B 47 N LYS B 48 1555 1555 1.32 LINK C ASP B 140 N MSE B 141 1555 1555 1.33 LINK C MSE B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N ASN B 143 1555 1555 1.33 LINK OD1 ASP B 151 K K B 403 1555 1555 2.56 LINK O ILE B 152 K K B 403 1555 1555 2.69 LINK C LEU B 166 N MSE B 167 1555 1555 1.34 LINK C MSE B 167 N THR B 168 1555 1555 1.33 LINK C ILE B 191 N MSE B 192 1555 1555 1.33 LINK C MSE B 192 N ILE B 193 1555 1555 1.33 LINK C ILE B 217 N MSE B 218 1555 1555 1.33 LINK C MSE B 218 N LEU B 219 1555 1555 1.33 LINK C GLU B 225 N MSE B 226 1555 1555 1.33 LINK C MSE B 226 N GLU B 227 1555 1555 1.33 LINK OD1 ASP B 239 K K B 403 1555 1555 2.56 LINK O CYS B 240 K K B 403 1555 1555 2.73 LINK C ILE B 242 N MSE B 243 1555 1555 1.33 LINK C MSE B 243 N VAL B 244 1555 1555 1.33 LINK C GLU B 247 N MSE B 248 1555 1555 1.32 LINK C MSE B 248 N SER B 249 1555 1555 1.33 LINK C VAL B 253 N MSE B 254 1555 1555 1.33 LINK C MSE B 254 N ARG B 255 1555 1555 1.33 LINK C ASN B 270 N MSE B 271 1555 1555 1.32 LINK C MSE B 271 N THR B 272 1555 1555 1.33 LINK K K A 404 O HOH A 704 1555 1555 3.33 LINK K K A 404 O HOH A 655 1555 1555 3.01 LINK K K A 404 O HOH A 774 1555 1555 3.22 LINK K K B 403 O HOH B 761 1555 1555 2.95 LINK K K B 403 O HOH B 674 1555 1555 3.31 SITE 1 AC1 5 ARG A 70 SER A 181 HOH A 502 HOH A 611 SITE 2 AC1 5 HOH A 632 SITE 1 AC2 3 ARG A 70 HOH A 501 HOH A 706 SITE 1 AC3 4 GLY A 60 GLU A 61 HOH A 525 HOH A 593 SITE 1 AC4 5 ASP A 151 ILE A 152 ASP A 239 CYS A 240 SITE 2 AC4 5 HOH A 655 SITE 1 AC5 2 GLN A 66 HOH A 669 SITE 1 AC6 7 GLN A 117 HOH A 732 TYR B 290 TYR B 291 SITE 2 AC6 7 ASP B 292 THR B 293 HOH B 546 SITE 1 AC7 6 ARG B 70 SER B 181 ARG B 184 HOH B 503 SITE 2 AC7 6 HOH B 507 HOH B 554 SITE 1 AC8 5 ASP B 151 ILE B 152 ASP B 239 CYS B 240 SITE 2 AC8 5 HOH B 761 SITE 1 AC9 6 GLU A 116 HOH A 515 HOH A 634 TYR B 291 SITE 2 AC9 6 HOH B 706 HOH B 810 SITE 1 AD1 1 LEU B 56 SITE 1 AD2 6 GLN B 104 ALA B 107 THR B 111 HOH B 521 SITE 2 AD2 6 HOH B 586 HOH B 795 CRYST1 42.010 88.120 79.670 90.00 95.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023804 0.000000 0.002271 0.00000 SCALE2 0.000000 0.011348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012609 0.00000 HETATM 1 N MSE A 13 14.068 18.673 81.224 1.00 33.90 N ANISOU 1 N MSE A 13 4437 4635 3808 1040 -364 -150 N HETATM 2 CA MSE A 13 14.392 19.493 82.401 1.00 34.29 C ANISOU 2 CA MSE A 13 4231 4779 4020 602 -559 -82 C HETATM 3 C MSE A 13 13.395 20.636 82.667 1.00 34.22 C ANISOU 3 C MSE A 13 4477 4627 3897 248 -402 150 C HETATM 4 O MSE A 13 12.718 21.109 81.750 1.00 36.28 O ANISOU 4 O MSE A 13 4793 4943 4047 40 -410 292 O HETATM 5 CB MSE A 13 15.821 20.045 82.299 1.00 36.78 C ANISOU 5 CB MSE A 13 4396 5110 4468 357 -611 -157 C HETATM 6 CG MSE A 13 16.891 18.964 82.322 1.00 38.87 C ANISOU 6 CG MSE A 13 4256 5479 5035 -12 -924 -173 C HETATM 7 SE MSE A 13 18.661 19.680 82.721 0.47 45.03 SE ANISOU 7 SE MSE A 13 5833 5704 5572 -95 -680 -80 SE HETATM 8 CE MSE A 13 19.654 18.012 82.926 1.00 40.94 C ANISOU 8 CE MSE A 13 4824 5467 5262 249 -759 108 C